Ppp1cb (protein phosphatase 1 catalytic subunit beta) - Rat Genome Database

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Gene: Ppp1cb (protein phosphatase 1 catalytic subunit beta) Mus musculus
Analyze
Symbol: Ppp1cb
Name: protein phosphatase 1 catalytic subunit beta
RGD ID: 731670
MGI Page MGI
Description: Enables protein serine/threonine phosphatase activity. Involved in circadian regulation of gene expression and entrainment of circadian clock by photoperiod. Located in cytoplasm. Is expressed in cornea; lens epithelium; lens fiber; limb; and retina. Human ortholog(s) of this gene implicated in Noonan syndrome-like disorder with loose anagen hair 2. Orthologous to human PPP1CB (protein phosphatase 1 catalytic subunit beta).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1200010B19; PP-1B; serine/threonine-protein phosphatase PP1-beta catalytic subunit
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39532,616,192 - 32,651,057 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl532,616,187 - 32,674,777 (+)EnsemblGRCm39 Ensembl
GRCm38532,458,848 - 32,493,713 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl532,458,843 - 32,517,433 (+)EnsemblGRCm38mm10GRCm38
MGSCv37532,761,343 - 32,796,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36532,735,841 - 32,769,335 (+)NCBIMGSCv36mm8
Celera529,932,959 - 29,967,634 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3H-1,2-dithiole-3-thione  (ISO)
4,4'-diaminodiphenylmethane  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
7,12-dimethyltetraphene  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
all-trans-retinoic acid  (ISO)
ammonium chloride  (ISO)
ampicillin  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
astaxanthin  (EXP)
benzene  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
Bisphenol B  (ISO)
bisphenol F  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
calcium atom  (ISO)
calcium(0)  (ISO)
cannabidiol  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (EXP)
clobetasol  (EXP)
clozapine  (ISO)
copper(II) sulfate  (ISO)
cyclosporin A  (ISO)
deguelin  (ISO)
dexamethasone  (ISO)
diarsenic trioxide  (ISO)
dibenzo[a,l]pyrene  (EXP)
dibutyl phthalate  (EXP,ISO)
diclofenac  (ISO)
dicrotophos  (ISO)
diethylstilbestrol  (ISO)
dioxygen  (EXP)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (EXP,ISO)
folic acid  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
gold atom  (ISO)
gold(0)  (ISO)
haloperidol  (ISO)
hexane  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead diacetate  (EXP,ISO)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
metronidazole  (ISO)
nefazodone  (ISO)
neomycin  (ISO)
nimesulide  (ISO)
Nonylphenol  (ISO)
oxybenzone  (ISO)
ozone  (EXP,ISO)
paclitaxel  (ISO)
PCB138  (ISO)
pentachlorophenol  (EXP)
phenobarbital  (EXP)
pirinixic acid  (ISO)
piroxicam  (ISO)
Propiverine  (ISO)
pyrimidifen  (ISO)
resveratrol  (ISO)
rimonabant  (EXP)
rotenone  (ISO)
SB 431542  (ISO)
sodium arsenite  (ISO)
sodium dodecyl sulfate  (ISO)
sodium fluoride  (EXP)
tamibarotene  (ISO)
tebufenpyrad  (ISO)
tert-butyl hydroperoxide  (ISO)
testosterone  (ISO)
thioacetamide  (ISO)
trichloroethene  (ISO)
Triptolide  (ISO)
triptonide  (EXP)
valproic acid  (ISO)
vancomycin  (ISO)

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Functional diversity of protein phosphatase-1, a cellular economizer and reset button. Ceulemans H and Bollen M, Physiol Rev. 2004 Jan;84(1):1-39.
2. AMP-activated protein kinase: also regulated by ADP? Hardie DG, etal., Trends Biochem Sci. 2011 Sep;36(9):470-7. doi: 10.1016/j.tibs.2011.06.004. Epub 2011 Jul 23.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. MGD IEA MGD IEA
7. Purification of the hepatic glycogen-associated form of protein phosphatase-1 by microcystin-Sepharose affinity chromatography. Moorhead G, etal., FEBS Lett. 1995 Apr 3;362(2):101-5.
8. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
9. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
10. Mouse MP Annotation Import Pipeline RGD automated import pipeline
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. DARPP-32, Jack of All Trades... Master of Which? Yger M and Girault JA, Front Behav Neurosci. 2011 Sep 8;5:56. doi: 10.3389/fnbeh.2011.00056. eCollection 2011.
Additional References at PubMed
PMID:2544298   PMID:7857673   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11172053   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14640981   PMID:15489334   PMID:15741177  
PMID:15761153   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16512683   PMID:17274640   PMID:17369396   PMID:17911046   PMID:17967808   PMID:18432318   PMID:18641122   PMID:18689497  
PMID:18799693   PMID:20592054   PMID:21267068   PMID:21471512   PMID:21677750   PMID:21712997   PMID:21873635   PMID:21930935   PMID:22083510   PMID:23116618   PMID:24319055   PMID:24457600  
PMID:25131634   PMID:25737280   PMID:26025364   PMID:26167872   PMID:26449462   PMID:26496610   PMID:27160897   PMID:27507650   PMID:27754788   PMID:28671696   PMID:28706196   PMID:29518331  
PMID:29669786   PMID:30185619   PMID:30196744   PMID:30562941   PMID:31323436   PMID:32325033   PMID:35670107   PMID:36417873  


Genomics

Comparative Map Data
Ppp1cb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39532,616,192 - 32,651,057 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl532,616,187 - 32,674,777 (+)EnsemblGRCm39 Ensembl
GRCm38532,458,848 - 32,493,713 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl532,458,843 - 32,517,433 (+)EnsemblGRCm38mm10GRCm38
MGSCv37532,761,343 - 32,796,085 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36532,735,841 - 32,769,335 (+)NCBIMGSCv36mm8
Celera529,932,959 - 29,967,634 (+)NCBICelera
Cytogenetic Map5B1NCBI
cM Map517.33NCBI
PPP1CB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38228,751,604 - 28,802,940 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl228,751,640 - 28,802,940 (+)EnsemblGRCh38hg38GRCh38
GRCh37228,974,470 - 29,025,806 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36228,828,118 - 28,879,310 (+)NCBINCBI36Build 36hg18NCBI36
Build 34228,886,264 - 28,937,456NCBI
Celera228,820,144 - 28,871,300 (+)NCBICelera
Cytogenetic Map2p23.2NCBI
HuRef228,716,532 - 28,767,764 (+)NCBIHuRef
CHM1_1228,904,700 - 28,955,863 (+)NCBICHM1_1
T2T-CHM13v2.0228,795,220 - 28,846,552 (+)NCBIT2T-CHM13v2.0
Ppp1cb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8629,681,099 - 29,712,835 (-)NCBIGRCr8
mRatBN7.2623,958,813 - 23,992,841 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl623,960,998 - 23,992,824 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx624,260,597 - 24,292,337 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0624,576,477 - 24,608,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0624,065,465 - 24,097,720 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0623,548,507 - 23,581,136 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl623,549,317 - 23,581,052 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0633,416,540 - 33,448,276 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4624,067,544 - 24,099,280 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1624,070,497 - 24,102,233 (-)NCBI
Celera623,460,146 - 23,491,883 (-)NCBICelera
Cytogenetic Map6q14NCBI
Ppp1cb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546910,662,032 - 10,682,398 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546910,657,029 - 10,682,398 (+)NCBIChiLan1.0ChiLan1.0
PPP1CB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21297,705,718 - 97,757,636 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A97,709,065 - 97,761,608 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A28,758,176 - 28,809,561 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A28,863,650 - 28,889,401 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A28,862,083 - 28,889,401 (+)Ensemblpanpan1.1panPan2
PPP1CB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11722,680,691 - 22,699,999 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1722,679,783 - 22,699,999 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1722,457,238 - 22,494,559 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01723,225,044 - 23,264,565 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1723,225,011 - 23,268,395 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11722,524,746 - 22,562,152 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01722,577,001 - 22,614,723 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01722,693,483 - 22,730,878 (+)NCBIUU_Cfam_GSD_1.0
Ppp1cb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629266,837,482 - 66,858,201 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364933,981,370 - 4,002,667 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364933,981,364 - 4,002,083 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1CB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3110,437,688 - 110,474,891 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13110,437,681 - 110,474,896 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23117,257,014 - 117,275,122 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1CB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11478,802,295 - 78,852,683 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1478,804,548 - 78,852,682 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604533,280,709 - 33,332,417 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1cb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473810,689,152 - 10,730,171 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473810,689,395 - 10,730,171 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp1cb
778 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2188
Count of miRNA genes:802
Interacting mature miRNAs:1041
Transcripts:ENSMUST00000015100, ENSMUST00000131300, ENSMUST00000133568
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10401122Pgia41_mproteoglycan induced arthritis 41 (mouse)Not determined582314434823280Mouse
15039371Nmrs21_mNAFLD-associated magnetic resonance shift 21 (mouse)5350482337504823Mouse
1301806Actd2_mactivity-distance traveled 2 (mouse)Not determined5538452039384652Mouse
4141207Imrfq1_mimmune response to Factor IX QTL 1 (mouse)Not determined5812411742124239Mouse
7394748Mom5_mmodifier of Min 5 (mouse)Not determined5884767233475637Mouse
1301693Sle6_msystemic lupus erythematosus susceptibility 6 (mouse)Not determined5889069387841837Mouse
1357478Kdnw1_mkidney weight 1 (mouse)Not determined5891594940529869Mouse
14696730Kidlq1_mkidney weight, left QTL 1 (mouse)51356315247563152Mouse
1301685Estq2_mestradiol regulated response QTL 2 (mouse)Not determined51563408449634190Mouse
1300719Iba5_minduction of brown adipocytes 5 (mouse)Not determined52068699354687134Mouse
1301776Skts3_mskin tumor susceptibility 3 (mouse)Not determined52166729555667403Mouse
11537368Hmtb10_mhemostasis and thrombosis 10 (mouse)52210082354500318Mouse
11537367Hmtb11_mhemostasis and thrombosis 11 (mouse)52210082364806579Mouse
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
1300701Cd8ts1_mCD8 T cell subset 1 (mouse)Not determined52721534861215451Mouse
1301555Alcp10_malcohol preference locus 10 (mouse)Not determined53102427565024480Mouse
1301403Alcp9_malcohol preference locus 9 (mouse)Not determined53102427565024480Mouse
11353827Hplq1_mhot plate latency 1 (mouse)53157045865570458Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse

Markers in Region
D5Mit296  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38532,476,740 - 32,476,846UniSTSGRCm38
MGSCv37532,779,113 - 32,779,219UniSTSGRCm37
Celera529,950,665 - 29,950,765UniSTS
Cytogenetic Map5B1UniSTS
cM Map518.0UniSTS
Whitehead Genetic514.2UniSTS
Whitehead_YAC5 UniSTS
Ppp1cb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv37532,788,275 - 32,788,404UniSTSGRCm37
Celera529,959,822 - 29,959,951UniSTS
Cytogenetic Map5B1UniSTS
cM Map5 UniSTS
RH139638  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38532,460,091 - 32,460,287UniSTSGRCm38
MGSCv37532,762,464 - 32,762,660UniSTSGRCm37
Celera529,933,974 - 29,934,170UniSTS
Cytogenetic Map5B1UniSTS
Ppp1cb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map5B1UniSTS
Ppp1cb  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38532,485,902 - 32,486,031UniSTSGRCm38
MGSCv37532,788,275 - 32,788,404UniSTSGRCm37
Celera529,959,822 - 29,959,951UniSTS
Cytogenetic Map5B1UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_172707 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006503780 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC091274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC102372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK017392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK088893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147112 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK157914 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK160743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK168512 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK169379 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193590 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK193890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK198041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK199993 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK202060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK203948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207882 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK214320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK216562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK217507 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC046832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  M27073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000015100   ⟹   ENSMUSP00000015100
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl532,616,187 - 32,652,867 (+)Ensembl
GRCm38.p6 Ensembl532,458,843 - 32,495,523 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl532,635,439 - 32,642,656 (+)Ensembl
GRCm38.p6 Ensembl532,478,095 - 32,485,312 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201360   ⟹   ENSMUSP00000144047
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl532,616,496 - 32,674,777 (+)Ensembl
GRCm38.p6 Ensembl532,459,152 - 32,517,433 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201600
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl532,616,530 - 32,621,087 (+)Ensembl
GRCm38.p6 Ensembl532,459,186 - 32,463,743 (+)Ensembl
RefSeq Acc Id: ENSMUST00000201880   ⟹   ENSMUSP00000144350
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl532,643,314 - 32,650,100 (+)Ensembl
GRCm38.p6 Ensembl532,485,970 - 32,492,756 (+)Ensembl
RefSeq Acc Id: ENSMUST00000202078   ⟹   ENSMUSP00000144167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl532,616,566 - 32,648,383 (+)Ensembl
GRCm38.p6 Ensembl532,459,222 - 32,491,039 (+)Ensembl
RefSeq Acc Id: NM_172707   ⟹   NP_766295
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39532,616,314 - 32,651,056 (+)NCBI
GRCm38532,458,970 - 32,493,712 (+)NCBI
MGSCv37532,761,343 - 32,796,085 (+)RGD
Celera529,932,959 - 29,967,634 (+)RGD
cM Map5 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006503780   ⟹   XP_006503843
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39532,616,192 - 32,651,057 (+)NCBI
GRCm38532,458,848 - 32,493,713 (+)NCBI
Sequence:
RefSeq Acc Id: NP_766295   ⟸   NM_172707
- UniProtKB: Q8C285 (UniProtKB/Swiss-Prot),   Q542E7 (UniProtKB/Swiss-Prot),   Q3TL90 (UniProtKB/Swiss-Prot),   Q3TBE5 (UniProtKB/Swiss-Prot),   Q9DBY2 (UniProtKB/Swiss-Prot),   P62141 (UniProtKB/Swiss-Prot),   Q3U7K1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006503843   ⟸   XM_006503780
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSMUSP00000144167   ⟸   ENSMUST00000202078
RefSeq Acc Id: ENSMUSP00000015100   ⟸   ENSMUST00000015100
RefSeq Acc Id: ENSMUSP00000144350   ⟸   ENSMUST00000201880
RefSeq Acc Id: ENSMUSP00000144047   ⟸   ENSMUST00000201360

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P62141-F1-model_v2 AlphaFold P62141 1-327 view protein structure

Promoters
RGD ID:6886392
Promoter ID:EPDNEW_M6647
Type:initiation region
Name:Ppp1cb_1
Description:Mus musculus protein phosphatase 1, catalytic subunit, beta isoform, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6648  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38532,459,047 - 32,459,107EPDNEW
RGD ID:6886394
Promoter ID:EPDNEW_M6648
Type:initiation region
Name:Ppp1cb_2
Description:Mus musculus protein phosphatase 1, catalytic subunit, beta isoform, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M6647  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38532,459,160 - 32,459,220EPDNEW
RGD ID:6838083
Promoter ID:MM_KWN:41884
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000059605,   OTTMUST00000059606
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36532,761,046 - 32,761,677 (+)MPROMDB
RGD ID:6838084
Promoter ID:MM_KWN:41886
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_4Hour,   Brain
Transcripts:OTTMUST00000059607
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36532,779,511 - 32,780,177 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:104871 AgrOrtholog
Ensembl Genes ENSMUSG00000014956 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000015100 ENTREZGENE
  ENSMUST00000015100.15 UniProtKB/Swiss-Prot
  ENSMUST00000201360.4 UniProtKB/Swiss-Prot
  ENSMUST00000201880.2 UniProtKB/TrEMBL
  ENSMUST00000202078.2 UniProtKB/TrEMBL
Gene3D-CATH 3.60.21.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Calcineurin-like_PHP_ApaH UniProtKB/Swiss-Prot
  Metallo-depent_PP-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ser/Thr-sp_prot-phosphatase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  STPPase_N UniProtKB/Swiss-Prot
KEGG Report mmu:19046 UniProtKB/Swiss-Prot
MGD MGI:104871 ENTREZGENE
NCBI Gene 19046 ENTREZGENE
PANTHER SERINE/THREONINE PROTEIN PHOSPHATASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SERINE/THREONINE-PROTEIN PHOSPHATASE PP1-ALPHA CATALYTIC SUBUNIT-RELATED UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam Metallophos UniProtKB/Swiss-Prot
  STPPase_N UniProtKB/Swiss-Prot
PharmGKB PPP1CB RGD
PhenoGen Ppp1cb PhenoGen
PRINTS STPHPHTASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE SER_THR_PHOSPHATASE UniProtKB/Swiss-Prot
SMART PP2Ac UniProtKB/Swiss-Prot
Superfamily-SCOP SSF56300 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0J9YUG2_MOUSE UniProtKB/TrEMBL
  A0A0J9YUU8_MOUSE UniProtKB/TrEMBL
  P62141 ENTREZGENE, UniProtKB/Swiss-Prot
  Q3TBE5 ENTREZGENE
  Q3TL90 ENTREZGENE
  Q3U7K1 ENTREZGENE
  Q542E7 ENTREZGENE
  Q8C285 ENTREZGENE
  Q9DBY2 ENTREZGENE
UniProt Secondary P37140 UniProtKB/Swiss-Prot
  Q3TBE5 UniProtKB/Swiss-Prot
  Q3TL90 UniProtKB/Swiss-Prot
  Q542E7 UniProtKB/Swiss-Prot
  Q8C285 UniProtKB/Swiss-Prot
  Q9DBY2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Ppp1cb  protein phosphatase 1 catalytic subunit beta    protein phosphatase 1, catalytic subunit, beta isoform  Symbol and/or name change 5135510 APPROVED