S1pr3 (sphingosine-1-phosphate receptor 3) - Rat Genome Database

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Gene: S1pr3 (sphingosine-1-phosphate receptor 3) Mus musculus
Analyze
Symbol: S1pr3
Name: sphingosine-1-phosphate receptor 3
RGD ID: 62254
MGI Page MGI
Description: Predicted to enable G protein-coupled receptor activity and integrin binding activity. Acts upstream of or within several processes, including Notch signaling pathway; adenylate cyclase-inhibiting G protein-coupled receptor signaling pathway; and regulation of interleukin-1 beta production. Is active in presynapse. Is expressed in several structures, including alimentary system; central nervous system; embryo mesenchyme; genitourinary system; and retina. Orthologous to human S1PR3 (sphingosine-1-phosphate receptor 3).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AI132464; Edg3; endothelial differentiation G-protein coupled receptor 3; endothelial differentiation sphingolipid G-protein-coupled receptor 3; LP; Lpb3; lysophospholipid receptor B3; S1; S1p receptor 3; S1P receptor Edg-3; S1p3; sphingosine 1-phosphate receptor 3; sphingosine 1-phosphate receptor Edg-3
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391351,562,654 - 51,576,833 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1351,562,675 - 51,576,833 (+)EnsemblGRCm39 Ensembl
GRCm381351,408,618 - 51,422,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1351,408,639 - 51,422,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371351,503,987 - 51,518,166 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361351,421,260 - 51,435,293 (+)NCBIMGSCv36mm8
Celera1352,481,303 - 52,495,482 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1326.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (EXP)
1,1,1-Trichloro-2-(o-chlorophenyl)-2-(p-chlorophenyl)ethane  (ISO)
1,2-dimethylhydrazine  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
4,4'-sulfonyldiphenol  (EXP)
5-aza-2'-deoxycytidine  (ISO)
acetamide  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
apigenin  (ISO)
aristolochic acid A  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
bleomycin A2  (EXP)
buta-1,3-diene  (EXP)
cadmium dichloride  (ISO)
carbon nanotube  (EXP)
carmustine  (ISO)
chloroprene  (EXP)
chlorpyrifos  (EXP)
choline  (EXP)
cisplatin  (ISO)
coumestrol  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
daidzein  (ISO)
daidzein 7-O-beta-D-glucoside  (ISO)
dexamethasone  (ISO)
dibutyl phthalate  (EXP,ISO)
diethylstilbestrol  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
entinostat  (ISO)
enzalutamide  (ISO)
ethanol  (EXP)
fingolimod hydrochloride  (ISO)
folic acid  (EXP)
fulvestrant  (ISO)
genistein  (ISO)
genistein 7-O-beta-D-glucoside  (ISO)
glucose  (ISO)
glycitein  (ISO)
glycitin  (ISO)
L-methionine  (EXP)
lipopolysaccharide  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (EXP)
N-Nitrosopyrrolidine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
nitrofen  (ISO)
oxaliplatin  (ISO)
ozone  (EXP)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenobarbital  (EXP)
pirinixic acid  (EXP)
potassium chromate  (ISO)
potassium dichromate  (EXP)
propionic acid  (ISO)
resveratrol  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
simvastatin  (ISO)
Soman  (ISO)
sphingosine 1-phosphate  (ISO)
temozolomide  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
topotecan  (ISO)
torcetrapib  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
troglitazone  (EXP,ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vanadyl sulfate  (ISO)
WIN 55212-2  (EXP)
zearalenone  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal angiogenesis  (IAGP)
abnormal B cell physiology  (IAGP)
abnormal cell physiology  (IAGP)
abnormal cytokine level  (IAGP)
abnormal inner ear vestibule morphology  (IAGP)
abnormal limb morphology  (IAGP)
abnormal maternal nurturing  (IAGP)
abnormal posture  (IAGP)
abnormal pulmonary alveolus epithelial cell morphology  (IAGP)
abnormal retina blood vessel morphology  (IEA)
abnormal retina morphology  (IEA)
abnormal skin coloration  (IEA)
abnormal vascular endothelial cell morphology  (IAGP)
abnormal vestibular system physiology  (IAGP)
absent startle reflex  (IAGP)
absent vestibular hair cell stereocilia  (IAGP)
cochlear ganglion degeneration  (IAGP)
cochlear inner hair cell degeneration  (IAGP)
cochlear outer hair cell degeneration  (IAGP)
decreased litter size  (IAGP)
decreased susceptibility to endotoxin shock  (IAGP)
decreased susceptibility to induced morbidity/mortality  (IAGP)
decreased vertical activity  (IAGP)
degeneration of organ of Corti supporting cells  (IAGP)
embryonic lethality during organogenesis, complete penetrance  (IAGP)
enlarged mesenteric lymph nodes  (IAGP)
female infertility  (IEA)
head tilt  (IAGP)
hemorrhage  (IAGP)
impaired righting response  (IAGP)
impaired swimming  (IAGP)
increased miscarriage rate  (IAGP)
lethality throughout fetal growth and development, incomplete penetrance  (IAGP)
limb grasping  (IAGP)
male infertility  (IEA)
no abnormal phenotype detected  (IAGP)
organ of Corti degeneration  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
prenatal lethality, incomplete penetrance  (IAGP)
reduced fertility  (IAGP)
skin edema  (IAGP)
utricular macular degeneration  (IAGP)
vestibular hair cell degeneration  (IAGP)
vestibular saccular macula degeneration  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Selective loss of sphingosine 1-phosphate signaling with no obvious phenotypic abnormality in mice lacking its G protein-coupled receptor, LP(B3)/EDG-3. Ishii I, etal., J Biol Chem 2001 Sep 7;276(36):33697-704.
2. Electronic Transfer of Homolog Data MGD and Homologene mouse data transfer
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. MGD IEA MGD IEA
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
9. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:9931453   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12006579   PMID:12401212   PMID:12477932   PMID:14966566   PMID:15138255   PMID:15184895  
PMID:15489334   PMID:15583019   PMID:15689381   PMID:15782199   PMID:16141072   PMID:16141073   PMID:16314531   PMID:16319286   PMID:16434032   PMID:16602821   PMID:16960101   PMID:16980623  
PMID:16982942   PMID:17158356   PMID:17284444   PMID:17287522   PMID:17293497   PMID:17339438   PMID:17341687   PMID:18024550   PMID:18037889   PMID:18287559   PMID:18296752   PMID:18305483  
PMID:18424450   PMID:18554416   PMID:18924241   PMID:19073640   PMID:19161225   PMID:19729475   PMID:19749179   PMID:19755413   PMID:20039302   PMID:20404103   PMID:20407207   PMID:20458606  
PMID:20826749   PMID:20874260   PMID:21164103   PMID:21281624   PMID:21289599   PMID:21319224   PMID:21386911   PMID:21668976   PMID:21677750   PMID:21873635   PMID:21875957   PMID:22178384  
PMID:22308044   PMID:22344462   PMID:22570366   PMID:22744969   PMID:22855711   PMID:22961081   PMID:23117660   PMID:23392686   PMID:23466305   PMID:23879641   PMID:23911934   PMID:23918395  
PMID:24003216   PMID:24602016   PMID:25198418   PMID:25330249   PMID:25333900   PMID:25457224   PMID:25832730   PMID:25954148   PMID:26208383   PMID:26272361   PMID:26286732   PMID:26494861  
PMID:26573295   PMID:26718782   PMID:26903652   PMID:27582371   PMID:27872583   PMID:28017639   PMID:28026131   PMID:28446426   PMID:28577576   PMID:28607130   PMID:28850247   PMID:28943478  
PMID:29066950   PMID:29273735   PMID:29555813   PMID:29561262   PMID:30006619   PMID:30082422   PMID:30305119   PMID:30655318   PMID:30972941   PMID:31173610   PMID:31314788   PMID:31415870  
PMID:31483837   PMID:31609468   PMID:31636343   PMID:31988136   PMID:32484801   PMID:32722120   PMID:33199821   PMID:35104805   PMID:35333897   PMID:35385339   PMID:35781853   PMID:38355793  


Genomics

Comparative Map Data
S1pr3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391351,562,654 - 51,576,833 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1351,562,675 - 51,576,833 (+)EnsemblGRCm39 Ensembl
GRCm381351,408,618 - 51,422,797 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1351,408,639 - 51,422,797 (+)EnsemblGRCm38mm10GRCm38
MGSCv371351,503,987 - 51,518,166 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361351,421,260 - 51,435,293 (+)NCBIMGSCv36mm8
Celera1352,481,303 - 52,495,482 (+)NCBICelera
Cytogenetic Map13A5NCBI
cM Map1326.12NCBI
S1PR3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38988,990,863 - 89,005,155 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl988,990,863 - 89,005,155 (+)EnsemblGRCh38hg38GRCh38
GRCh37991,605,778 - 91,620,070 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36990,796,182 - 90,809,745 (+)NCBINCBI36Build 36hg18NCBI36
Build 34988,835,915 - 88,849,478NCBI
Celera962,189,011 - 62,202,574 (+)NCBICelera
Cytogenetic Map9q22.1NCBI
HuRef961,438,768 - 61,452,511 (+)NCBIHuRef
CHM1_1991,754,483 - 91,768,224 (+)NCBICHM1_1
T2T-CHM13v2.09101,153,351 - 101,167,644 (+)NCBIT2T-CHM13v2.0
S1pr3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81713,932,773 - 13,946,213 (-)NCBIGRCr8
mRatBN7.21713,781,050 - 13,794,408 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1713,781,050 - 13,794,505 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1713,704,546 - 13,717,841 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01715,315,258 - 15,328,555 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01713,631,365 - 13,644,660 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01713,799,383 - 13,812,877 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1713,799,383 - 13,812,704 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01715,871,251 - 15,884,751 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41719,657,822 - 19,661,106 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1713,529,246 - 13,542,351 (-)NCBICelera
Cytogenetic Map17p14NCBI
S1pr3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555153,024,258 - 3,035,996 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555153,024,258 - 3,035,996 (-)NCBIChiLan1.0ChiLan1.0
S1PR3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21150,455,855 - 50,460,900 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1950,459,337 - 50,463,288 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0960,080,189 - 60,094,311 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1988,126,416 - 88,140,149 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl988,126,476 - 88,137,333 (+)Ensemblpanpan1.1panPan2
S1PR3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1197,102,708 - 97,107,611 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl197,104,652 - 97,105,857 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha197,565,504 - 97,576,501 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0197,714,499 - 97,725,495 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl197,714,526 - 97,725,557 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1197,342,250 - 97,353,244 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0197,061,323 - 97,072,318 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0197,819,845 - 97,830,838 (-)NCBIUU_Cfam_GSD_1.0
S1pr3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494410,793,383 - 10,849,904 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493764539,701 - 42,497 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493764539,690 - 40,790 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
S1PR3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14659,309 - 671,706 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114659,314 - 674,969 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214880,158 - 898,709 (+)NCBISscrofa10.2Sscrofa10.2susScr3
S1PR3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11299,484,615 - 99,498,211 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1299,494,423 - 99,495,559 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603887,806,079 - 87,819,666 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
S1pr3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476523,659,973 - 23,673,809 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476523,660,155 - 23,673,855 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in S1pr3
419 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1195
Count of miRNA genes:606
Interacting mature miRNAs:762
Transcripts:ENSMUST00000087978
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135031841184318559Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135061682884617027Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4521044283744746Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5031841184318559Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134521044283744746Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134785347673148119Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
12738427Lfibq24_mliver fibrosis QTL 24 (mouse)134425810752758667Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse

Markers in Region
Edg3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv371351,514,154 - 51,514,774UniSTSGRCm37
Celera1352,491,470 - 52,492,090UniSTS
Cytogenetic Map13B1UniSTS
cM Map13 UniSTS
cM Map13 UniSTS
AI132464  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381351,421,843 - 51,421,981UniSTSGRCm38
MGSCv371351,517,212 - 51,517,350UniSTSGRCm37
Celera1352,494,528 - 52,494,666UniSTS
Cytogenetic Map13B1UniSTS
Whitehead/MRC_RH13530.4UniSTS
UniSTS:237017  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381351,421,994 - 51,422,077UniSTSGRCm38
MGSCv371351,517,363 - 51,517,446UniSTSGRCm37
Celera1352,494,679 - 52,494,762UniSTS
Cytogenetic Map13B1UniSTS
Edg3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381351,418,785 - 51,419,405UniSTSGRCm38
MGSCv371351,514,154 - 51,514,774UniSTSGRCm37
Celera1352,491,470 - 52,492,090UniSTS
Cytogenetic Map13B1UniSTS
cM Map13 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_010101 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB028143 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC159104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF108021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029852 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083405 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK084944 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK085180 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK195308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200588 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK200792 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209260 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064007 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000087978   ⟹   ENSMUSP00000085293
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1351,562,675 - 51,576,833 (+)Ensembl
GRCm38.p6 Ensembl1351,408,639 - 51,422,797 (+)Ensembl
RefSeq Acc Id: NM_010101   ⟹   NP_034231
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391351,562,654 - 51,576,833 (+)NCBI
GRCm381351,408,618 - 51,422,797 (+)ENTREZGENE
MGSCv371351,503,987 - 51,518,166 (+)RGD
Celera1352,481,303 - 52,495,482 (+)RGD
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_034231   ⟸   NM_010101
- UniProtKB: Q8BP20 (UniProtKB/Swiss-Prot),   Q9Z0U9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000085293   ⟸   ENSMUST00000087978

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Z0U9-F1-model_v2 AlphaFold Q9Z0U9 1-378 view protein structure

Promoters
RGD ID:8680338
Promoter ID:EPDNEW_M18200
Type:multiple initiation site
Name:S1pr3_1
Description:Mus musculus sphingosine-1-phosphate receptor 3 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381351,408,764 - 51,408,824EPDNEW
RGD ID:6824350
Promoter ID:MM_KWN:14119
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_010101
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361351,503,889 - 51,504,389 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1339365 AgrOrtholog
Ensembl Genes ENSMUSG00000067586 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000087978 ENTREZGENE
  ENSMUST00000087978.5 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot
InterPro EDG3_rcpt UniProtKB/Swiss-Prot
  GPCR_Rhodpsn UniProtKB/Swiss-Prot
  GPCR_Rhodpsn_7TM UniProtKB/Swiss-Prot
  S1P_rcpt UniProtKB/Swiss-Prot
KEGG Report mmu:13610 UniProtKB/Swiss-Prot
MGD MGI:1339365 ENTREZGENE
NCBI Gene 13610 ENTREZGENE
PANTHER G-PROTEIN COUPLED RECEPTOR UniProtKB/Swiss-Prot
  SPHINGOSINE 1-PHOSPHATE RECEPTOR 3 UniProtKB/Swiss-Prot
Pfam 7tm_1 UniProtKB/Swiss-Prot
PhenoGen S1pr3 PhenoGen
PRINTS EDG3RECEPTOR UniProtKB/Swiss-Prot
  GPCRRHODOPSN UniProtKB/Swiss-Prot
  S1PRECEPTOR UniProtKB/Swiss-Prot
PROSITE G_PROTEIN_RECEP_F1_1 UniProtKB/Swiss-Prot
  G_PROTEIN_RECEP_F1_2 UniProtKB/Swiss-Prot
SMART 7TM_GPCR_Srsx UniProtKB/Swiss-Prot
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot
UniProt Q8BP20 ENTREZGENE
  Q9Z0U9 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q8BP20 UniProtKB/Swiss-Prot