Gene: Col2a1 (collagen type II alpha 1 chain) Rattus norvegicus
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Symbol: Col2a1
Name: collagen type II alpha 1 chain
Description: ENCODES a protein that exhibits identical protein binding (ortholog); MHC class II protein binding (ortholog); platelet-derived growth factor binding (ortholog); INVOLVED IN cartilage development; cartilage development involved in endochondral bone morphogenesis; cellular response to insulin-like growth factor stimulus; PARTICIPATES IN syndecan signaling pathway; cell-extracellular matrix signaling pathway; Entamoeba histolyca infection pathway; ASSOCIATED WITH chondrodystrophy; ASSOCIATED WITH Bronchial Fistula; degenerative disc disease; Femur Head Necrosis; FOUND IN cytoplasm; basement membrane (ortholog); collagen trimer (ortholog); INTERACTS WITH (R)-carnitine; (R)-mevalonic acid; (R)-pantothenic acid
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: alpha-1 type II collagen; CG2A1A; collagen alpha-1(II) chain; collagen type II (Col2A1) gene, enhancer region; collagen, type II, alpha 1; COLLII; Procollagen II alpha 1; procollagen, type II, alpha 1
Orthologs:
Homo sapiens (human) : COL2A1 (collagen type II alpha 1 chain)  HGNC  AGR
Mus musculus (house mouse) : Col2a1 (collagen, type II, alpha 1)  MGI
Chinchilla lanigera (long-tailed chinchilla) : Col2a1 (collagen type II alpha 1 chain)
Canis lupus familiaris (dog) : COL2A1 (collagen type II alpha 1 chain)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Col2a1 (collagen type II alpha 1 chain)
more info ...
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.07139,454,945 - 139,484,403 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.07139,646,698 - 139,675,832 (-)NCBIRnor5.0rn5Rnor5.0
RGSC_v3.47136,679,219 - 136,707,976 (-)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.17136,755,655 - 136,784,413 (-)NCBI
Celera7125,589,749 - 125,618,504 (-)NCBI
Cytogenetic Map7q36NCBImapview
RH 3.4 Map71096.2RGD
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations
Gene-Chemical Interaction Annotations
Gene Ontology Annotations
Molecular Pathway Annotations
Phenotype Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
Position Markers
QTLs in Region (Rnor_6.0)
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
RGD Curation Notes
 
More on Col2a1
AGR Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
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RGD Object Information
RGD ID: 2375
Created: 2000-05-25
Species: Rattus norvegicus
Last Modified: 2017-10-03
Status: ACTIVE