Dnm3 (dynamin 3) - Rat Genome Database

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Gene: Dnm3 (dynamin 3) Heterocephalus glaber
Analyze
Symbol: Dnm3
Name: dynamin 3
RGD ID: 18919719
Description: ENCODES a protein that exhibits GTPase activity (ortholog); identical protein binding (ortholog); nitric-oxide synthase binding (ortholog); INVOLVED IN endocytosis (ortholog); filopodium assembly (ortholog); negative regulation of dendritic spine morphogenesis (ortholog); PARTICIPATES IN clathrin-dependent synaptic vesicle endocytosis; ASSOCIATED WITH 1q24 Deletion Syndrome (ortholog); autoimmune lymphoproliferative syndrome (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN apical tubulobulbar complex (ortholog); axon (ortholog); basal tubulobulbar complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: dynamin-3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247719,247,218 - 9,838,254 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247719,247,463 - 9,838,276 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Dnm3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247719,247,218 - 9,838,254 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247719,247,463 - 9,838,276 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
DNM3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381171,841,498 - 172,418,466 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1171,817,887 - 172,418,466 (+)EnsemblGRCh38hg38GRCh38
GRCh371171,810,638 - 172,387,606 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361170,077,261 - 170,648,480 (+)NCBINCBI36Build 36hg18NCBI36
Build 341168,542,294 - 169,113,513NCBI
Celera1144,920,019 - 145,491,322 (+)NCBICelera
Cytogenetic Map1q24.3NCBI
HuRef1143,034,379 - 143,605,830 (+)NCBIHuRef
CHM1_11173,232,859 - 173,803,974 (+)NCBICHM1_1
T2T-CHM13v2.01171,198,091 - 171,775,179 (+)NCBIT2T-CHM13v2.0
Dnm3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391161,810,022 - 162,305,890 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1161,810,022 - 162,305,603 (-)EnsemblGRCm39 Ensembl
GRCm381161,982,450 - 162,478,321 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1161,982,453 - 162,478,034 (-)EnsemblGRCm38mm10GRCm38
MGSCv371163,917,433 - 164,408,165 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361163,823,979 - 164,314,705 (-)NCBIMGSCv36mm8
Celera1164,442,411 - 164,918,051 (-)NCBICelera
Cytogenetic Map1H2.1NCBI
cM Map169.95NCBI
Dnm3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81376,892,381 - 77,371,346 (-)NCBIGRCr8
mRatBN7.21374,359,043 - 74,838,135 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1374,359,213 - 74,838,108 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1376,937,177 - 77,413,346 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01378,244,410 - 78,721,423 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01375,504,269 - 75,981,283 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01379,906,711 - 80,379,967 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1379,910,382 - 80,379,929 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01384,796,219 - 85,272,032 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41377,688,376 - 78,165,178 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11377,702,567 - 78,179,370 (-)NCBI
Celera1374,120,681 - 74,589,220 (-)NCBICelera
Cytogenetic Map13q22NCBI
Dnm3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540612,345,693 - 12,881,269 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540612,345,483 - 12,881,182 (+)NCBIChiLan1.0ChiLan1.0
DNM3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2177,327,604 - 77,910,903 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1177,007,605 - 77,584,939 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01147,339,773 - 147,916,513 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11151,049,215 - 151,626,289 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1151,049,346 - 151,615,808 (+)Ensemblpanpan1.1panPan2
DNM3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1726,569,708 - 27,024,939 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl726,574,453 - 27,024,759 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha726,095,554 - 26,643,105 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0726,315,840 - 26,863,371 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl726,315,837 - 26,863,372 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1726,226,439 - 26,773,966 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0726,297,008 - 26,844,657 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0726,447,294 - 26,995,113 (-)NCBIUU_Cfam_GSD_1.0
Dnm3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934497,125,192 - 97,564,504 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648114,971,947 - 15,411,288 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648114,971,977 - 15,411,253 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DNM3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9114,262,791 - 114,797,674 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19114,262,782 - 114,805,252 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29126,088,358 - 126,400,571 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DNM3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12556,735,877 - 57,285,557 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2556,746,215 - 57,285,498 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605558,341,839 - 58,908,030 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_004853428 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_004853429 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_013075375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265424 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_021265425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01050433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050434 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050436 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050437 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050438 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050439 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050442 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050443 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050444 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050445 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050446 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050447 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050448 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050449 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050450 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050451 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050453 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050455 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AHKG01050456 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSHGLT00000008002   ⟹   ENSHGLP00000007914
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247719,247,218 - 9,838,254 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008003   ⟹   ENSHGLP00000007915
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247719,255,080 - 9,838,254 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008004   ⟹   ENSHGLP00000007916
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247719,255,080 - 9,838,254 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000008005   ⟹   ENSHGLP00000007917
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247719,270,721 - 9,549,166 (-)Ensembl
RefSeq Acc Id: XM_004853428   ⟹   XP_004853485
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,251,106 - 9,838,271 (-)NCBI
RefSeq Acc Id: XM_004853429   ⟹   XP_004853486
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,251,106 - 9,838,271 (-)NCBI
RefSeq Acc Id: XM_013075375   ⟹   XP_012930829
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,471,148 - 9,838,275 (-)NCBI
RefSeq Acc Id: XM_021265415   ⟹   XP_021121074
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,251,106 - 9,838,271 (-)NCBI
RefSeq Acc Id: XM_021265416   ⟹   XP_021121075
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,251,106 - 9,838,271 (-)NCBI
RefSeq Acc Id: XM_021265417   ⟹   XP_021121076
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,247,463 - 9,838,272 (-)NCBI
RefSeq Acc Id: XM_021265418   ⟹   XP_021121077
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,270,007 - 9,838,272 (-)NCBI
RefSeq Acc Id: XM_021265419   ⟹   XP_021121078
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,251,106 - 9,802,038 (-)NCBI
RefSeq Acc Id: XM_021265420   ⟹   XP_021121079
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,519,046 - 9,838,276 (-)NCBI
RefSeq Acc Id: XM_021265421   ⟹   XP_021121080
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,444,479 - 9,838,276 (-)NCBI
RefSeq Acc Id: XM_021265422   ⟹   XP_021121081
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,519,046 - 9,838,276 (-)NCBI
RefSeq Acc Id: XM_021265423   ⟹   XP_021121082
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,471,148 - 9,838,276 (-)NCBI
RefSeq Acc Id: XM_021265424   ⟹   XP_021121083
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,444,482 - 9,838,276 (-)NCBI
RefSeq Acc Id: XM_021265425   ⟹   XP_021121084
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247719,542,675 - 9,838,276 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021121076   ⟸   XM_021265417
- Peptide Label: isoform X4
RefSeq Acc Id: XP_004853486   ⟸   XM_004853429
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004853485   ⟸   XM_004853428
- Peptide Label: isoform X3
RefSeq Acc Id: XP_021121075   ⟸   XM_021265416
- Peptide Label: isoform X2
RefSeq Acc Id: XP_021121074   ⟸   XM_021265415
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021121078   ⟸   XM_021265419
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021121077   ⟸   XM_021265418
- Peptide Label: isoform X5
RefSeq Acc Id: XP_021121080   ⟸   XM_021265421
- Peptide Label: isoform X9
RefSeq Acc Id: XP_021121083   ⟸   XM_021265424
- Peptide Label: isoform X12
RefSeq Acc Id: XP_021121082   ⟸   XM_021265423
- Peptide Label: isoform X11
RefSeq Acc Id: XP_012930829   ⟸   XM_013075375
- Peptide Label: isoform X14
RefSeq Acc Id: XP_021121081   ⟸   XM_021265422
- Peptide Label: isoform X10
RefSeq Acc Id: XP_021121079   ⟸   XM_021265420
- Peptide Label: isoform X8
RefSeq Acc Id: XP_021121084   ⟸   XM_021265425
- Peptide Label: isoform X13
RefSeq Acc Id: ENSHGLP00000007914   ⟸   ENSHGLT00000008002
RefSeq Acc Id: ENSHGLP00000007917   ⟸   ENSHGLT00000008005
RefSeq Acc Id: ENSHGLP00000007915   ⟸   ENSHGLT00000008003
RefSeq Acc Id: ENSHGLP00000007916   ⟸   ENSHGLT00000008004


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000005733 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000008002 ENTREZGENE
  ENSHGLT00000008003 ENTREZGENE
  ENSHGLT00000008004 ENTREZGENE
NCBI Gene Dnm3 ENTREZGENE