Rassf1 (Ras association domain family member 1) - Rat Genome Database

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Gene: Rassf1 (Ras association domain family member 1) Heterocephalus glaber
Analyze
Symbol: Rassf1
Name: Ras association domain family member 1
RGD ID: 18915061
Description: ENCODES a protein that exhibits identical protein binding (ortholog); small GTPase binding (ortholog); INVOLVED IN DNA damage response (ortholog); positive regulation of protein ubiquitination (ortholog); protein stabilization (ortholog); PARTICIPATES IN p53 signaling pathway; ASSOCIATED WITH adenocarcinoma (ortholog); Animal Mammary Neoplasms (ortholog); bladder disease (ortholog); FOUND IN cytoskeleton (inferred); microtubule (inferred); microtubule cytoskeleton (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ras association domain-containing protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247304,181,462 - 4,190,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247304,181,207 - 4,190,603 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Rassf1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247304,181,462 - 4,190,431 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247304,181,207 - 4,190,603 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
RASSF1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38350,329,788 - 50,340,836 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl350,329,782 - 50,340,980 (-)EnsemblGRCh38hg38GRCh38
GRCh37350,367,219 - 50,378,267 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36350,342,221 - 50,353,371 (-)NCBINCBI36Build 36hg18NCBI36
Build 34350,342,220 - 50,353,371NCBI
Celera350,340,051 - 50,351,201 (-)NCBICelera
Cytogenetic Map3p21.31NCBI
HuRef350,422,848 - 50,433,998 (-)NCBIHuRef
CHM1_1350,319,475 - 50,330,627 (-)NCBICHM1_1
T2T-CHM13v2.0350,359,511 - 50,370,560 (-)NCBIT2T-CHM13v2.0
Rassf1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399107,428,752 - 107,439,460 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9107,428,754 - 107,439,466 (+)EnsemblGRCm39 Ensembl
GRCm389107,551,434 - 107,562,267 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9107,551,555 - 107,562,267 (+)EnsemblGRCm38mm10GRCm38
MGSCv379107,456,987 - 107,464,591 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369107,412,757 - 107,420,361 (+)NCBIMGSCv36mm8
Celera9107,163,421 - 107,171,009 (+)NCBICelera
Cytogenetic Map9F1NCBI
cM Map958.12NCBI
Rassf1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88117,103,665 - 117,114,805 (+)NCBIGRCr8
mRatBN7.28108,225,023 - 108,236,164 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8108,225,023 - 108,236,164 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8113,852,061 - 113,863,191 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08112,051,217 - 112,062,347 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08109,893,998 - 109,905,128 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08116,307,149 - 116,318,289 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8116,307,141 - 116,318,289 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08115,663,409 - 115,674,549 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48112,798,863 - 112,810,004 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.18112,822,246 - 112,829,459 (+)NCBI
Celera8107,531,445 - 107,542,731 (+)NCBICelera
Cytogenetic Map8q32NCBI
Rassf1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555322,132,822 - 2,142,106 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555322,132,892 - 2,142,106 (-)NCBIChiLan1.0ChiLan1.0
RASSF1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2250,310,363 - 50,321,411 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1350,315,138 - 50,326,157 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0350,255,897 - 50,267,042 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1351,491,548 - 51,502,386 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl351,491,548 - 51,502,392 (-)Ensemblpanpan1.1panPan2
RASSF1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12039,014,639 - 39,023,393 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2039,014,666 - 39,022,585 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2038,935,865 - 38,944,610 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02039,370,859 - 39,379,601 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2039,370,874 - 39,379,600 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12038,738,691 - 38,747,434 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02039,142,254 - 39,150,992 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02039,422,263 - 39,431,009 (+)NCBIUU_Cfam_GSD_1.0
Rassf1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560265,096,680 - 65,105,871 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365291,857,145 - 1,867,260 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365291,857,177 - 1,866,198 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RASSF1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1332,816,156 - 32,825,226 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11332,816,156 - 32,825,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21335,994,689 - 36,003,831 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RASSF1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12211,716,969 - 11,728,646 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2211,716,918 - 11,725,027 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041155,258,161 - 155,269,986 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000019812   ⟹   ENSHGLP00000019616
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247304,181,462 - 4,190,431 (-)Ensembl
RefSeq Acc Id: ENSHGLT00000019813   ⟹   ENSHGLP00000019617
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_0046247304,181,462 - 4,188,115 (-)Ensembl
RefSeq Acc Id: XM_004834122   ⟹   XP_004834179
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,190,603 (-)NCBI
RefSeq Acc Id: XM_004834124   ⟹   XP_004834181
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,188,389 (-)NCBI
RefSeq Acc Id: XM_004834126   ⟹   XP_004834183
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,188,399 (-)NCBI
RefSeq Acc Id: XM_004834127   ⟹   XP_004834184
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,188,374 (-)NCBI
RefSeq Acc Id: XM_004834128   ⟹   XP_004834185
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,190,603 (-)NCBI
RefSeq Acc Id: XM_021236729   ⟹   XP_021092388
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,190,603 (-)NCBI
RefSeq Acc Id: XM_021236825   ⟹   XP_021092484
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,188,400 (-)NCBI
RefSeq Acc Id: XM_021236899   ⟹   XP_021092558
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046247304,181,207 - 4,188,401 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021092388   ⟸   XM_021236729
- Peptide Label: isoform X2
RefSeq Acc Id: XP_004834185   ⟸   XM_004834128
- Peptide Label: isoform X4
- UniProtKB: G5BZS7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004834179   ⟸   XM_004834122
- Peptide Label: isoform X1
RefSeq Acc Id: XP_021092558   ⟸   XM_021236899
- Peptide Label: isoform X7
RefSeq Acc Id: XP_021092484   ⟸   XM_021236825
- Peptide Label: isoform X5
RefSeq Acc Id: XP_004834183   ⟸   XM_004834126
- Peptide Label: isoform X6
RefSeq Acc Id: XP_004834181   ⟸   XM_004834124
- Peptide Label: isoform X3
RefSeq Acc Id: XP_004834184   ⟸   XM_004834127
- Peptide Label: isoform X8
- UniProtKB: A0A0P6JUQ5 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSHGLP00000019617   ⟸   ENSHGLT00000019813
RefSeq Acc Id: ENSHGLP00000019616   ⟸   ENSHGLT00000019812


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000014052 Ensembl, ENTREZGENE
Ensembl Transcript ENSHGLT00000019812 ENTREZGENE
  ENSHGLT00000019813 ENTREZGENE
Gene3D-CATH 1.20.5.110 UniProtKB/TrEMBL
  3.30.60.20 UniProtKB/TrEMBL
InterPro C-RASSF UniProtKB/TrEMBL
  C1-like_sf UniProtKB/TrEMBL
  PE/DAG-bd UniProtKB/TrEMBL
  RA_dom UniProtKB/TrEMBL
  RASSF1 UniProtKB/TrEMBL
  SARAH_dom UniProtKB/TrEMBL
  Ubiquitin-like_domsf UniProtKB/TrEMBL
NCBI Gene Rassf1 ENTREZGENE
PANTHER PTHR22738 UniProtKB/TrEMBL
  PTHR22738:SF12 UniProtKB/TrEMBL
Pfam C1_1 UniProtKB/TrEMBL
  Nore1-SARAH UniProtKB/TrEMBL
  PF00788 UniProtKB/TrEMBL
PROSITE PS50200 UniProtKB/TrEMBL
  SARAH UniProtKB/TrEMBL
  ZF_DAG_PE_1 UniProtKB/TrEMBL
  ZF_DAG_PE_2 UniProtKB/TrEMBL
SMART SM00109 UniProtKB/TrEMBL
  SM00314 UniProtKB/TrEMBL
Superfamily-SCOP Cysteine-rich domain UniProtKB/TrEMBL
  SSF54236 UniProtKB/TrEMBL
UniProt A0A0P6JUQ5 ENTREZGENE, UniProtKB/TrEMBL
  G5BZS7 ENTREZGENE, UniProtKB/TrEMBL