Arid4a (AT-rich interaction domain 4A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: Arid4a (AT-rich interaction domain 4A) Heterocephalus glaber
Analyze
Symbol: Arid4a
Name: AT-rich interaction domain 4A
RGD ID: 18903471
Description: ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN chromatin organization (ortholog); erythrocyte development (ortholog); establishment of Sertoli cell barrier (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Joubert syndrome 23 (ortholog); multiple myeloma (ortholog); FOUND IN nucleoplasm (ortholog); plasma membrane (ortholog); transcription repressor complex (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 4A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248843,360,461 - 3,434,622 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Arid4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248843,360,461 - 3,434,622 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2
ARID4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381458,298,555 - 58,373,876 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1458,298,504 - 58,373,887 (+)EnsemblGRCh38hg38GRCh38
GRCh371458,765,273 - 58,840,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,834,975 - 57,910,204 (+)NCBINCBI36Build 36hg18NCBI36
Build 341457,835,115 - 57,909,391NCBI
Celera1438,815,183 - 38,890,415 (+)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1438,930,721 - 39,005,059 (+)NCBIHuRef
CHM1_11458,703,772 - 58,779,018 (+)NCBICHM1_1
T2T-CHM13v2.01452,505,552 - 52,580,897 (+)NCBIT2T-CHM13v2.0
Arid4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,061,314 - 71,146,125 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,062,764 - 71,145,366 (+)EnsemblGRCm39 Ensembl
GRCm381271,015,081 - 71,099,351 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,015,990 - 71,098,592 (+)EnsemblGRCm38mm10GRCm38
MGSCv371272,116,954 - 72,200,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361271,927,864 - 72,017,956 (+)NCBIMGSCv36mm8
Celera1272,119,521 - 72,198,476 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
Arid4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,258,429 - 95,335,987 (+)NCBIGRCr8
mRatBN7.2689,522,459 - 89,593,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,522,442 - 89,593,510 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,907,041 - 89,977,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,206,512 - 90,277,406 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,646,006 - 89,716,903 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,461,713 - 93,532,901 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,461,713 - 93,532,901 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06102,917,436 - 102,998,489 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4693,130,856 - 93,201,927 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1693,137,409 - 93,205,135 (+)NCBI
Celera688,004,523 - 88,077,696 (+)NCBICelera
Cytogenetic Map6q24NCBI
Arid4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546612,017,588 - 12,087,667 (+)NCBIChiLan1.0ChiLan1.0
ARID4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01438,890,688 - 38,965,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,159,518 - 57,233,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,159,399 - 57,233,825 (+)Ensemblpanpan1.1panPan2
ARID4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1833,661,558 - 33,729,660 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl833,661,625 - 33,727,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha833,422,854 - 33,490,937 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0833,903,140 - 33,971,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,903,198 - 33,970,464 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1833,515,824 - 33,583,896 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0833,583,347 - 33,651,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0833,958,187 - 34,026,298 (+)NCBIUU_Cfam_GSD_1.0
Arid4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864071,429,375 - 71,501,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364952,690,328 - 2,761,418 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364952,690,231 - 2,762,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1187,385,332 - 187,452,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11187,385,324 - 187,452,558 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,288,989 - 208,356,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,491,391 - 35,566,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605323,727,934 - 23,845,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_004871104   ⟹   XP_004871161
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248843,360,462 - 3,434,622 (+)NCBI
RefSeq Acc Id: XM_004871105   ⟹   XP_004871162
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248843,360,462 - 3,434,622 (+)NCBI
RefSeq Acc Id: XM_021249215   ⟹   XP_021104874
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248843,360,595 - 3,434,622 (+)NCBI
RefSeq Acc Id: XM_021249216   ⟹   XP_021104875
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248843,361,079 - 3,434,622 (+)NCBI
RefSeq Acc Id: XM_021249217   ⟹   XP_021104876
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_0046248843,360,461 - 3,434,622 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_021104876   ⟸   XM_021249217
- Peptide Label: isoform X2
- UniProtKB: A0A0P6J2Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871162   ⟸   XM_004871105
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004871161   ⟸   XM_004871104
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104874   ⟸   XM_021249215
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2Y0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_021104875   ⟸   XM_021249216
- Peptide Label: isoform X1
- UniProtKB: A0A0P6J2Y0 (UniProtKB/TrEMBL)


Additional Information

Database Acc Id Source(s)
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
InterPro ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  CBD_RBP1_like UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
  Tudor_ARID4A_rpt1 UniProtKB/TrEMBL
NCBI Gene Arid4a ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4A UniProtKB/TrEMBL
  RBP-RELATED UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
  CHROMO UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/TrEMBL
  SSF54160 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A0P6J2Y0 ENTREZGENE, UniProtKB/TrEMBL