ARID4A (AT-rich interaction domain 4A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Gene: ARID4A (AT-rich interaction domain 4A) Pan paniscus
Analyze
Symbol: ARID4A
Name: AT-rich interaction domain 4A
RGD ID: 11729176
Description: ENCODES a protein that exhibits DNA binding (inferred); double-stranded DNA binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN chromatin organization (ortholog); erythrocyte development (ortholog); establishment of Sertoli cell barrier (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Joubert syndrome 23 (ortholog); multiple myeloma (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 4A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01438,890,688 - 38,965,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,159,518 - 57,233,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,159,399 - 57,233,825 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ARID4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01438,890,688 - 38,965,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,159,518 - 57,233,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,159,399 - 57,233,825 (+)Ensemblpanpan1.1panPan2
ARID4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381458,298,555 - 58,373,876 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1458,298,504 - 58,373,887 (+)EnsemblGRCh38hg38GRCh38
GRCh371458,765,273 - 58,840,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,834,975 - 57,910,204 (+)NCBINCBI36Build 36hg18NCBI36
Build 341457,835,115 - 57,909,391NCBI
Celera1438,815,183 - 38,890,415 (+)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1438,930,721 - 39,005,059 (+)NCBIHuRef
CHM1_11458,703,772 - 58,779,018 (+)NCBICHM1_1
T2T-CHM13v2.01452,505,552 - 52,580,897 (+)NCBIT2T-CHM13v2.0
Arid4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,061,314 - 71,146,125 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,062,764 - 71,145,366 (+)EnsemblGRCm39 Ensembl
GRCm381271,015,081 - 71,099,351 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,015,990 - 71,098,592 (+)EnsemblGRCm38mm10GRCm38
MGSCv371272,116,954 - 72,200,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361271,927,864 - 72,017,956 (+)NCBIMGSCv36mm8
Celera1272,119,521 - 72,198,476 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
Arid4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,258,429 - 95,335,987 (+)NCBIGRCr8
mRatBN7.2689,522,459 - 89,593,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,522,442 - 89,593,510 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,907,041 - 89,977,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,206,512 - 90,277,406 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,646,006 - 89,716,903 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,461,713 - 93,532,901 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,461,713 - 93,532,901 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06102,917,436 - 102,998,489 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4693,130,856 - 93,201,927 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1693,137,409 - 93,205,135 (+)NCBI
Celera688,004,523 - 88,077,696 (+)NCBICelera
Cytogenetic Map6q24NCBI
Arid4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546612,017,588 - 12,087,667 (+)NCBIChiLan1.0ChiLan1.0
ARID4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1833,661,558 - 33,729,660 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl833,661,625 - 33,727,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha833,422,854 - 33,490,937 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0833,903,140 - 33,971,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,903,198 - 33,970,464 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1833,515,824 - 33,583,896 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0833,583,347 - 33,651,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0833,958,187 - 34,026,298 (+)NCBIUU_Cfam_GSD_1.0
Arid4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864071,429,375 - 71,501,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364952,690,328 - 2,761,418 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364952,690,231 - 2,762,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1187,385,332 - 187,452,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11187,385,324 - 187,452,558 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,288,989 - 208,356,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,491,391 - 35,566,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605323,727,934 - 23,845,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248843,360,461 - 3,434,622 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000063110   ⟹   ENSPPAP00000040196
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1457,159,399 - 57,233,825 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000063117   ⟹   ENSPPAP00000040202
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1457,161,039 - 57,232,081 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000063123   ⟹   ENSPPAP00000040208
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl1457,162,699 - 57,232,081 (+)Ensembl
RefSeq Acc Id: XM_003831659   ⟹   XP_003831707
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBI
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBI
Mhudiblu_PPA_v01438,890,739 - 38,965,928 (+)NCBI
PanPan1.11457,159,518 - 57,233,825 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008957013   ⟹   XP_008955261
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBI
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBI
Mhudiblu_PPA_v01438,890,740 - 38,965,928 (+)NCBI
PanPan1.11457,159,518 - 57,233,825 (+)NCBI
Sequence:
RefSeq Acc Id: XM_034937622   ⟹   XP_034793513
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21559,421,429 - 59,495,771 (+)NCBI
NHGRI_mPanPan11458,637,949 - 58,712,256 (+)NCBI
Mhudiblu_PPA_v01438,891,729 - 38,965,928 (+)NCBI
RefSeq Acc Id: XM_034937623   ⟹   XP_034793514
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBI
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBI
Mhudiblu_PPA_v01438,890,740 - 38,965,928 (+)NCBI
RefSeq Acc Id: XM_034937624   ⟹   XP_034793515
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBI
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBI
Mhudiblu_PPA_v01438,890,688 - 38,965,928 (+)NCBI
Reference Protein Sequences
RefSeq Acc Id: XP_008955261   ⟸   XM_008957013
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CGQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003831707   ⟸   XM_003831659
- Peptide Label: isoform X2
- UniProtKB: A0A2R9CE28 (UniProtKB/TrEMBL),   A0A2R9CGQ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_034793515   ⟸   XM_034937624
- Peptide Label: isoform X4
- UniProtKB: A0A2R9CP91 (UniProtKB/TrEMBL),   A0A2R9CGQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034793514   ⟸   XM_034937623
- Peptide Label: isoform X3
- UniProtKB: A0A2R9CGQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_034793513   ⟸   XM_034937622
- Peptide Label: isoform X1
- UniProtKB: A0A2R9CGQ2 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSPPAP00000040208   ⟸   ENSPPAT00000063123
RefSeq Acc Id: ENSPPAP00000040196   ⟸   ENSPPAT00000063110
RefSeq Acc Id: ENSPPAP00000040202   ⟸   ENSPPAT00000063117
Protein Domains
ARID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000042713 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000063110.1 UniProtKB/TrEMBL
  ENSPPAT00000063117.1 UniProtKB/TrEMBL
  ENSPPAT00000063123.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
InterPro ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  CBD_RBP1_like UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
  Tudor_ARID4A_rpt1 UniProtKB/TrEMBL
KEGG Report pps:100978126 UniProtKB/TrEMBL
NCBI Gene ARID4A ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4A UniProtKB/TrEMBL
  RBP-RELATED UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
  CHROMO UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/TrEMBL
  SSF54160 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A2R9CE28 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CGQ2 ENTREZGENE, UniProtKB/TrEMBL
  A0A2R9CP91 ENTREZGENE, UniProtKB/TrEMBL