ARID4A (AT-rich interaction domain 4A) - Rat Genome Database

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Gene: ARID4A (AT-rich interaction domain 4A) Chlorocebus sabaeus
Analyze
Symbol: ARID4A
Name: AT-rich interaction domain 4A
RGD ID: 18631102
Description: ENCODES a protein that exhibits DNA binding (ortholog); INVOLVED IN chromatin organization (ortholog); erythrocyte development (ortholog); establishment of Sertoli cell barrier (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Joubert syndrome 23 (ortholog); multiple myeloma (ortholog); FOUND IN nucleoplasm (ortholog); nucleus (ortholog); plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AT-rich interactive domain-containing protein 4A; LOC103229085; peptidyl-prolyl cis-trans isomerase A pseudogene
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,491,391 - 35,566,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605323,727,934 - 23,845,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function
DNA binding  (ISO)

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
ARID4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,491,391 - 35,566,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605323,727,934 - 23,845,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ARID4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381458,298,555 - 58,373,876 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1458,298,504 - 58,373,887 (+)EnsemblGRCh38hg38GRCh38
GRCh371458,765,273 - 58,840,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,834,975 - 57,910,204 (+)NCBINCBI36Build 36hg18NCBI36
Build 341457,835,115 - 57,909,391NCBI
Celera1438,815,183 - 38,890,415 (+)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1438,930,721 - 39,005,059 (+)NCBIHuRef
CHM1_11458,703,772 - 58,779,018 (+)NCBICHM1_1
T2T-CHM13v2.01452,505,552 - 52,580,897 (+)NCBIT2T-CHM13v2.0
Arid4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,061,314 - 71,146,125 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,062,764 - 71,145,366 (+)EnsemblGRCm39 Ensembl
GRCm381271,015,081 - 71,099,351 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,015,990 - 71,098,592 (+)EnsemblGRCm38mm10GRCm38
MGSCv371272,116,954 - 72,200,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361271,927,864 - 72,017,956 (+)NCBIMGSCv36mm8
Celera1272,119,521 - 72,198,476 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
Arid4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,258,429 - 95,335,987 (+)NCBIGRCr8
mRatBN7.2689,522,459 - 89,593,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,522,442 - 89,593,510 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,907,041 - 89,977,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,206,512 - 90,277,406 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,646,006 - 89,716,903 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,461,713 - 93,532,901 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,461,713 - 93,532,901 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06102,917,436 - 102,998,489 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4693,130,856 - 93,201,927 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1693,137,409 - 93,205,135 (+)NCBI
Celera688,004,523 - 88,077,696 (+)NCBICelera
Cytogenetic Map6q24NCBI
Arid4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546612,017,588 - 12,087,667 (+)NCBIChiLan1.0ChiLan1.0
ARID4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01438,890,688 - 38,965,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,159,518 - 57,233,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,159,399 - 57,233,825 (+)Ensemblpanpan1.1panPan2
ARID4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1833,661,558 - 33,729,660 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl833,661,625 - 33,727,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha833,422,854 - 33,490,937 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0833,903,140 - 33,971,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,903,198 - 33,970,464 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1833,515,824 - 33,583,896 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0833,583,347 - 33,651,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0833,958,187 - 34,026,298 (+)NCBIUU_Cfam_GSD_1.0
Arid4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864071,429,375 - 71,501,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364952,690,328 - 2,761,418 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364952,690,231 - 2,762,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1187,385,332 - 187,452,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11187,385,324 - 187,452,558 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,288,989 - 208,356,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Arid4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248843,360,461 - 3,434,622 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XM_007986808   ⟹   XP_007984999
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12435,491,443 - 35,566,073 (+)NCBI
Vero_WHO_p1.0NW_02366605323,727,934 - 23,845,648 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986809   ⟹   XP_007985000
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12435,492,466 - 35,566,073 (+)NCBI
Vero_WHO_p1.0NW_02366605323,729,094 - 23,845,647 (+)NCBI
Sequence:
RefSeq Acc Id: XM_007986810   ⟹   XP_007985001
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.12435,491,391 - 35,566,073 (+)NCBI
Vero_WHO_p1.0NW_02366605323,727,934 - 23,845,648 (+)NCBI
Sequence:
RefSeq Acc Id: XM_037984046   ⟹   XP_037839974
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
Vero_WHO_p1.0NW_02366605323,728,105 - 23,738,721 (+)NCBI
Protein Sequences
Protein RefSeqs XP_007984999 (Get FASTA)   NCBI Sequence Viewer  
  XP_007985000 (Get FASTA)   NCBI Sequence Viewer  
  XP_007985001 (Get FASTA)   NCBI Sequence Viewer  
  XP_037839974 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_007985001   ⟸   XM_007986810
- Peptide Label: isoform X2
RefSeq Acc Id: XP_007984999   ⟸   XM_007986808
- Peptide Label: isoform X1
RefSeq Acc Id: XP_007985000   ⟸   XM_007986809
- Peptide Label: isoform X1
RefSeq Acc Id: XP_037839974   ⟸   XM_037984046
- Peptide Label: isoform X3


Additional Information

Database Acc Id Source(s)
NCBI Gene ARID4A ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-12-03 ARID4A  AT-rich interaction domain 4A  LOC103229085  peptidyl-prolyl cis-trans isomerase A pseudogene  Data merged from RGD:18654345 737654 PROVISIONAL