ARID4A (AT-rich interaction domain 4A) - Rat Genome Database

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Gene: ARID4A (AT-rich interaction domain 4A) Sus scrofa
Analyze
Symbol: ARID4A
Name: AT-rich interaction domain 4A
RGD ID: 14026895
Description: ENCODES a protein that exhibits DNA binding (inferred); double-stranded DNA binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN chromatin organization (ortholog); erythrocyte development (ortholog); establishment of Sertoli cell barrier (ortholog); ASSOCIATED WITH acute myeloid leukemia (ortholog); Joubert syndrome 23 (ortholog); multiple myeloma (ortholog); FOUND IN nucleoplasm (inferred); nucleus (inferred); plasma membrane (inferred)
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AT-rich interactive domain-containing protein 4A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1187,385,332 - 187,452,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11187,385,324 - 187,452,558 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,288,989 - 208,356,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:30032202  


Genomics

Comparative Map Data
ARID4A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1187,385,332 - 187,452,540 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11187,385,324 - 187,452,558 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,288,989 - 208,356,181 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARID4A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381458,298,555 - 58,373,876 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1458,298,504 - 58,373,887 (+)EnsemblGRCh38hg38GRCh38
GRCh371458,765,273 - 58,840,594 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,834,975 - 57,910,204 (+)NCBINCBI36Build 36hg18NCBI36
Build 341457,835,115 - 57,909,391NCBI
Celera1438,815,183 - 38,890,415 (+)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1438,930,721 - 39,005,059 (+)NCBIHuRef
CHM1_11458,703,772 - 58,779,018 (+)NCBICHM1_1
T2T-CHM13v2.01452,505,552 - 52,580,897 (+)NCBIT2T-CHM13v2.0
Arid4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,061,314 - 71,146,125 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,062,764 - 71,145,366 (+)EnsemblGRCm39 Ensembl
GRCm381271,015,081 - 71,099,351 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,015,990 - 71,098,592 (+)EnsemblGRCm38mm10GRCm38
MGSCv371272,116,954 - 72,200,338 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361271,927,864 - 72,017,956 (+)NCBIMGSCv36mm8
Celera1272,119,521 - 72,198,476 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
Arid4a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,258,429 - 95,335,987 (+)NCBIGRCr8
mRatBN7.2689,522,459 - 89,593,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,522,442 - 89,593,510 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx689,907,041 - 89,977,937 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0690,206,512 - 90,277,406 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0689,646,006 - 89,716,903 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0693,461,713 - 93,532,901 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,461,713 - 93,532,901 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.06102,917,436 - 102,998,489 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4693,130,856 - 93,201,927 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1693,137,409 - 93,205,135 (+)NCBI
Celera688,004,523 - 88,077,696 (+)NCBICelera
Cytogenetic Map6q24NCBI
Arid4a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495546612,017,588 - 12,087,667 (+)NCBIChiLan1.0ChiLan1.0
ARID4A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,420,400 - 59,495,771 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,636,842 - 58,712,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01438,890,688 - 38,965,928 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,159,518 - 57,233,825 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,159,399 - 57,233,825 (+)Ensemblpanpan1.1panPan2
ARID4A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1833,661,558 - 33,729,660 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl833,661,625 - 33,727,986 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha833,422,854 - 33,490,937 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0833,903,140 - 33,971,303 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,903,198 - 33,970,464 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1833,515,824 - 33,583,896 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0833,583,347 - 33,651,977 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0833,958,187 - 34,026,298 (+)NCBIUU_Cfam_GSD_1.0
Arid4a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864071,429,375 - 71,501,370 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364952,690,328 - 2,761,418 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364952,690,231 - 2,762,213 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARID4A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,491,391 - 35,566,073 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605323,727,934 - 23,845,648 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arid4a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248843,360,461 - 3,434,622 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ARID4A
1210 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 10 2 3 5 23 3 3
Low 2 2 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000005590   ⟹   ENSSSCP00000005450
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1187,385,385 - 187,452,534 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000088096   ⟹   ENSSSCP00000066868
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1187,385,332 - 187,452,540 (+)Ensembl
RefSeq Acc Id: NM_001244179   ⟹   NP_001231108
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11187,385,354 - 187,452,543 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005659998   ⟹   XP_005660055
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11187,385,324 - 187,452,558 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005660000   ⟹   XP_005660057
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11187,385,332 - 187,452,543 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021088206   ⟹   XP_020943865
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11187,390,564 - 187,452,447 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_005660055   ⟸   XM_005659998
- Peptide Label: isoform X1
- UniProtKB: F1SSK5 (UniProtKB/TrEMBL),   A0A8D0Q7G0 (UniProtKB/TrEMBL),   A0A8D1KJT5 (UniProtKB/TrEMBL),   A0A8D1D0U4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005660057   ⟸   XM_005660000
- Peptide Label: isoform X2
- UniProtKB: A0A4X1WE15 (UniProtKB/TrEMBL),   A0A480XP18 (UniProtKB/TrEMBL),   A0A8D1KJT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001231108   ⟸   NM_001244179
- UniProtKB: A0A8D1KJT5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020943865   ⟸   XM_021088206
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSSSCP00000005450   ⟸   ENSSSCT00000005590
RefSeq Acc Id: ENSSSCP00000066868   ⟸   ENSSSCT00000088096
Protein Domains
ARID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000005073 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005036570 UniProtKB/TrEMBL
  ENSSSCG00015074231 UniProtKB/TrEMBL
  ENSSSCG00025057929 UniProtKB/TrEMBL
  ENSSSCG00030049921 UniProtKB/TrEMBL
  ENSSSCG00035062256 UniProtKB/TrEMBL
  ENSSSCG00040069130 UniProtKB/TrEMBL
  ENSSSCG00045007116 UniProtKB/TrEMBL
  ENSSSCG00050008826 UniProtKB/TrEMBL
  ENSSSCG00055014340 UniProtKB/TrEMBL
  ENSSSCG00060043049 UniProtKB/TrEMBL
  ENSSSCG00065058502 UniProtKB/TrEMBL
  ENSSSCG00070030556 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000005590 ENTREZGENE
  ENSSSCT00000005590.4 UniProtKB/TrEMBL
  ENSSSCT00000088096 ENTREZGENE
  ENSSSCT00000088096.1 UniProtKB/TrEMBL
  ENSSSCT00005059710.1 UniProtKB/TrEMBL
  ENSSSCT00005059758.1 UniProtKB/TrEMBL
  ENSSSCT00005059795.1 UniProtKB/TrEMBL
  ENSSSCT00015100137.1 UniProtKB/TrEMBL
  ENSSSCT00015100412.1 UniProtKB/TrEMBL
  ENSSSCT00015100619.1 UniProtKB/TrEMBL
  ENSSSCT00025079347.1 UniProtKB/TrEMBL
  ENSSSCT00025079759.1 UniProtKB/TrEMBL
  ENSSSCT00030069620.1 UniProtKB/TrEMBL
  ENSSSCT00030069644.1 UniProtKB/TrEMBL
  ENSSSCT00030069659.1 UniProtKB/TrEMBL
  ENSSSCT00035083687.1 UniProtKB/TrEMBL
  ENSSSCT00035083717.1 UniProtKB/TrEMBL
  ENSSSCT00035083730.1 UniProtKB/TrEMBL
  ENSSSCT00040094732.1 UniProtKB/TrEMBL
  ENSSSCT00040094946.1 UniProtKB/TrEMBL
  ENSSSCT00045011850.1 UniProtKB/TrEMBL
  ENSSSCT00045011897.1 UniProtKB/TrEMBL
  ENSSSCT00050011955.1 UniProtKB/TrEMBL
  ENSSSCT00050011965.1 UniProtKB/TrEMBL
  ENSSSCT00055028335.1 UniProtKB/TrEMBL
  ENSSSCT00055028444.1 UniProtKB/TrEMBL
  ENSSSCT00060058375.1 UniProtKB/TrEMBL
  ENSSSCT00060058384.1 UniProtKB/TrEMBL
  ENSSSCT00065080055.1 UniProtKB/TrEMBL
  ENSSSCT00065080074.1 UniProtKB/TrEMBL
  ENSSSCT00070061517.1 UniProtKB/TrEMBL
  ENSSSCT00070061518.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.60 UniProtKB/TrEMBL
  2.30.30.140 UniProtKB/TrEMBL
InterPro ARID_dom UniProtKB/TrEMBL
  ARID_dom_sf UniProtKB/TrEMBL
  CBD_RBP1_like UniProtKB/TrEMBL
  Chromo-like_dom_sf UniProtKB/TrEMBL
  Chromo/chromo_shadow_dom UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
  Tudor_ARID4A_rpt1 UniProtKB/TrEMBL
NCBI Gene ARID4A ENTREZGENE
PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4A UniProtKB/TrEMBL
  RBP-RELATED UniProtKB/TrEMBL
Pfam ARID UniProtKB/TrEMBL
  RBB1NT UniProtKB/TrEMBL
  Tudor-knot UniProtKB/TrEMBL
PROSITE ARID UniProtKB/TrEMBL
SMART ARID UniProtKB/TrEMBL
  BRIGHT UniProtKB/TrEMBL
  CHROMO UniProtKB/TrEMBL
  TUDOR UniProtKB/TrEMBL
Superfamily-SCOP SSF46774 UniProtKB/TrEMBL
  SSF54160 UniProtKB/TrEMBL
  Tudor/PWWP/MBT UniProtKB/TrEMBL
UniProt A0A480XP18 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1WCZ6_PIG UniProtKB/TrEMBL
  A0A4X1WE15 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0Q769_PIG UniProtKB/TrEMBL
  A0A8D0Q7G0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0UCB6_PIG UniProtKB/TrEMBL
  A0A8D1AQ47_PIG UniProtKB/TrEMBL
  A0A8D1D0U4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1FPS5_PIG UniProtKB/TrEMBL
  A0A8D1JSD7_PIG UniProtKB/TrEMBL
  A0A8D1JWD0_PIG UniProtKB/TrEMBL
  A0A8D1KJT5 ENTREZGENE, UniProtKB/TrEMBL
  F1SSK5 ENTREZGENE
UniProt Secondary A0A5G2R8D1 UniProtKB/TrEMBL
  F1SSK5 UniProtKB/TrEMBL
VGNC ID VGNC:85509 ENTREZGENE