Epcip (exosomal polycystin 1 interacting protein) - Rat Genome Database

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Gene: Epcip (exosomal polycystin 1 interacting protein) Mus musculus
Analyze
Symbol: Epcip (Ensembl: 4932438H23Rik)
Name: exosomal polycystin 1 interacting protein (Ensembl:RIKEN cDNA 4932438H23 gene)
RGD ID: 1622247
MGI Page MGI
Description: Predicted to be involved in mitocytosis. Predicted to be located in extracellular exosome and migrasome. Is expressed in several structures, including genitourinary system; heart; nervous system; sensory organ; and thymus. Orthologous to human EPCIP (exosomal polycystin 1 interacting protein).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4931406G06Rik; 4932438H23Rik; AI550392; hypothetical protein LOC74387; polycystin-1-interacting protein 1; uncharacterized protein C21orf62 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391690,841,534 - 90,866,040 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1690,850,823 - 90,892,010 (-)EnsemblGRCm39 Ensembl
GRCm381691,054,877 - 91,130,103 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,053,935 - 91,095,122 (-)EnsemblGRCm38mm10GRCm38
MGSCv371691,054,180 - 91,069,390 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361690,942,794 - 90,958,004 (-)NCBIMGSCv36mm8
Celera1692,135,605 - 92,150,807 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1652.35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12466854   PMID:12466855   PMID:12477932   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:21267068   PMID:21677750   PMID:30973865  


Genomics

Comparative Map Data
Epcip
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391690,841,534 - 90,866,040 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1690,850,823 - 90,892,010 (-)EnsemblGRCm39 Ensembl
GRCm381691,054,877 - 91,130,103 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1691,053,935 - 91,095,122 (-)EnsemblGRCm38mm10GRCm38
MGSCv371691,054,180 - 91,069,390 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361690,942,794 - 90,958,004 (-)NCBIMGSCv36mm8
Celera1692,135,605 - 92,150,807 (-)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1652.35NCBI
EPCIP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382132,790,673 - 32,813,703 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2132,790,673 - 32,813,743 (-)EnsemblGRCh38hg38GRCh38
GRCh372134,162,984 - 34,186,013 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362133,084,855 - 33,107,876 (-)NCBINCBI36Build 36hg18NCBI36
Build 342133,087,745 - 33,107,829NCBI
Celera2119,346,641 - 19,369,711 (-)NCBICelera
Cytogenetic Map21q22.11NCBI
HuRef2119,572,320 - 19,595,326 (-)NCBIHuRef
CHM1_12133,725,128 - 33,748,245 (-)NCBICHM1_1
T2T-CHM13v2.02131,156,897 - 31,179,935 (-)NCBIT2T-CHM13v2.0
Epcip
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81143,793,924 - 43,811,388 (-)NCBIGRCr8
mRatBN7.21130,307,842 - 30,325,829 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1130,310,350 - 30,325,439 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1138,994,695 - 39,012,149 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01131,666,118 - 31,683,572 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01130,840,545 - 30,857,999 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01131,220,566 - 31,238,495 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1131,223,074 - 31,238,026 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01134,831,057 - 34,848,558 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41131,039,805 - 31,055,914 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1129,976,897 - 29,991,831 (-)NCBICelera
Cytogenetic Map11q11NCBI
Epcip
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540732,229,108 - 32,249,097 (-)NCBIChiLan1.0ChiLan1.0
EPCIP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22228,903,874 - 28,924,829 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12123,763,834 - 23,784,820 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02119,153,434 - 19,174,752 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12132,529,572 - 32,552,595 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2132,532,656 - 32,552,541 (-)Ensemblpanpan1.1panPan2
EPCIP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13127,457,591 - 27,496,423 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3127,460,093 - 27,460,752 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3127,453,873 - 27,454,532 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03127,656,918 - 27,695,885 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3127,659,383 - 27,660,042 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13127,525,390 - 27,526,049 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03127,537,370 - 27,538,029 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03128,044,739 - 28,045,398 (-)NCBIUU_Cfam_GSD_1.0
Epcip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497128,038,572 - 28,055,382 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365009,427,898 - 9,428,617 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365009,412,507 - 9,429,250 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
EPCIP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13196,387,383 - 196,404,714 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113196,387,380 - 196,404,856 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213206,399,336 - 206,416,823 (-)NCBISscrofa10.2Sscrofa10.2susScr3
EPCIP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1259,346,296 - 59,367,721 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl259,366,479 - 59,367,135 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660711,886,621 - 1,907,779 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Epcip
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474521,034,962 - 21,035,675 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474521,031,717 - 21,064,616 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Epcip
1054 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1403
Count of miRNA genes:482
Interacting mature miRNAs:585
Transcripts:ENSMUST00000035689, ENSMUST00000114076, ENSMUST00000146047
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse

Markers in Region
AI550392  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381691,055,632 - 91,055,746UniSTSGRCm38
MGSCv371691,055,877 - 91,055,991UniSTSGRCm37
Celera1692,137,302 - 92,137,416UniSTS
Cytogenetic Map16C3.3UniSTS
Whitehead/MRC_RH16969.32UniSTS
4932438H23Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381691,055,831 - 91,056,067UniSTSGRCm38
MGSCv371691,056,076 - 91,056,312UniSTSGRCm37
Celera1692,137,501 - 92,137,737UniSTS
Cytogenetic Map16C3.3UniSTS
cM Map16 UniSTS
4932438H23Rik  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381691,055,577 - 91,055,881UniSTSGRCm38
MGSCv371691,055,822 - 91,056,126UniSTSGRCm37
Celera1692,137,247 - 92,137,551UniSTS
Cytogenetic Map16C3.3UniSTS


Expression


Sequence


RefSeq Acc Id: ENSMUST00000035689   ⟹   ENSMUSP00000040111
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,850,823 - 90,866,033 (-)Ensembl
GRCm38.p6 Ensembl1691,053,935 - 91,069,145 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114076   ⟹   ENSMUSP00000109710
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,850,823 - 90,866,033 (-)Ensembl
GRCm38.p6 Ensembl1691,053,935 - 91,069,145 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146047   ⟹   ENSMUSP00000122640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1690,852,726 - 90,892,010 (-)Ensembl
GRCm38.p6 Ensembl1691,055,838 - 91,095,122 (-)Ensembl
RefSeq Acc Id: NM_001163695   ⟹   NP_001157167
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,852,408 - 90,866,040 (-)NCBI
GRCm381691,055,520 - 91,069,152 (-)NCBI
MGSCv371691,054,180 - 91,069,390 (-)RGD
Celera1692,135,605 - 92,150,807 (-)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_028905   ⟹   NP_083181
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,852,408 - 90,866,040 (-)NCBI
GRCm381691,055,520 - 91,069,152 (-)NCBI
MGSCv371691,054,180 - 91,069,390 (-)RGD
Celera1692,135,605 - 92,150,807 (-)RGD
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_030249314   ⟹   XP_030105174
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,841,534 - 90,866,005 (-)NCBI
GRCm381691,054,877 - 91,069,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030249315   ⟹   XP_030105175
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,841,534 - 90,866,005 (-)NCBI
GRCm381691,054,877 - 91,069,623 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160167   ⟹   XP_036016060
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,841,534 - 90,866,040 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036160168   ⟹   XP_036016061
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391690,841,534 - 90,866,040 (-)NCBI
Sequence:
RefSeq Acc Id: NP_083181   ⟸   NM_028905
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: NP_001157167   ⟸   NM_001163695
- Peptide Label: precursor
- Sequence:
RefSeq Acc Id: XP_030105175   ⟸   XM_030249315
- Peptide Label: isoform X1
- UniProtKB: Q9D4G1 (UniProtKB/Swiss-Prot),   Q544A2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_030105174   ⟸   XM_030249314
- Peptide Label: isoform X1
- UniProtKB: Q9D4G1 (UniProtKB/Swiss-Prot),   Q544A2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: ENSMUSP00000122640   ⟸   ENSMUST00000146047
RefSeq Acc Id: ENSMUSP00000040111   ⟸   ENSMUST00000035689
RefSeq Acc Id: ENSMUSP00000109710   ⟸   ENSMUST00000114076
RefSeq Acc Id: XP_036016061   ⟸   XM_036160168
- Peptide Label: isoform X1
- UniProtKB: Q9D4G1 (UniProtKB/Swiss-Prot),   Q544A2 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036016060   ⟸   XM_036160167
- Peptide Label: isoform X1
- UniProtKB: Q9D4G1 (UniProtKB/Swiss-Prot),   Q544A2 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D4G1-F1-model_v2 AlphaFold Q9D4G1 1-230 view protein structure

Promoters
RGD ID:6847287
Promoter ID:MM_ACW:21217
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Spleen
Transcripts:4932438H23RIK.CSEP07-UNSPLICED
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361691,056,211 - 91,056,711 (-)MPROMDB
RGD ID:13674424
Promoter ID:EPDNEW_M21361
Type:initiation region
Name:4932438H23Rik_1
Description:Mus musculus RIKEN cDNA 4932438H23 gene , transcript variant2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381691,069,101 - 91,069,161EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1921637 AgrOrtholog
Ensembl Genes ENSMUSG00000039851 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035689 ENTREZGENE
  ENSMUST00000035689.8 UniProtKB/Swiss-Prot
  ENSMUST00000114076 ENTREZGENE
  ENSMUST00000114076.2 UniProtKB/Swiss-Prot
  ENSMUST00000146047.2 UniProtKB/TrEMBL
InterPro DUF4571 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:74387 UniProtKB/Swiss-Prot
MGD MGI:1921637 ENTREZGENE
NCBI Gene 74387 ENTREZGENE
PANTHER PTHR35658 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RCG58666, ISOFORM CRA_A UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF4571 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Epcip PhenoGen
UniProt CU062_MOUSE UniProtKB/Swiss-Prot
  D3Z4P0_MOUSE UniProtKB/TrEMBL
  Q544A2 ENTREZGENE
  Q9D4G1 ENTREZGENE
UniProt Secondary Q544A2 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-12-11 Epcip  exosomal polycystin 1 interacting protein  4932438H23Rik  RIKEN cDNA 4932438H23 gene  Symbol and/or name updated 27372883 PROVISIONAL