Epcip (exosomal polycystin 1 interacting protein)

Gene: Epcip (exosomal polycystin 1 interacting protein) Chinchilla lanigera

Analyze

Symbol:

Epcip

Name:

exosomal polycystin 1 interacting protein

RGD ID:

8928099

Description:

INVOLVED IN mitocytosis (ortholog); ASSOCIATED WITH amyotrophic lateral sclerosis type 1 (ortholog); autosomal dominant intellectual developmental disorder 7 (ortholog); genetic disease (ortholog); FOUND IN extracellular exosome (ortholog); migrasome (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

chromosome unknown C21orf62 homolog; chromosome unknown open reading frame, human C21orf62; CUNH21orf62; LOC102017952; uncharacterized protein C21orf62 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955407	32,229,108 - 32,249,097 (-)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

amyotrophic lateral sclerosis type 1 (ISO)

autosomal dominant intellectual developmental disorder 7 (ISO)

genetic disease (ISO)

Parkinson's disease 20 (ISO)

ZTTK Syndrome (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

mitocytosis (ISO)

Cellular Component

extracellular exosome (ISO)

migrasome (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Genomics

Comparative Map Data

Epcip
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955407	32,229,108 - 32,249,097 (-)	NCBI	ChiLan1.0	ChiLan1.0

EPCIP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	32,790,673 - 32,813,703 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	32,790,673 - 32,813,743 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	21	34,162,984 - 34,186,013 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	33,084,855 - 33,107,876 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	21	33,087,745 - 33,107,829	NCBI
Celera	21	19,346,641 - 19,369,711 (-)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	19,572,320 - 19,595,326 (-)	NCBI		HuRef
CHM1_1	21	33,725,128 - 33,748,245 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	21	31,156,897 - 31,179,935 (-)	NCBI		T2T-CHM13v2.0

Epcip
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	90,841,534 - 90,866,040 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	90,850,823 - 90,892,010 (-)	Ensembl		GRCm39 Ensembl
GRCm38	16	91,054,877 - 91,130,103 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	91,053,935 - 91,095,122 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	91,054,180 - 91,069,390 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	90,942,794 - 90,958,004 (-)	NCBI		MGSCv36	mm8
Celera	16	92,135,605 - 92,150,807 (-)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	52.35	NCBI

Epcip
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	43,793,924 - 43,811,388 (-)	NCBI		GRCr8
mRatBN7.2	11	30,307,842 - 30,325,829 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,310,350 - 30,325,439 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	38,994,695 - 39,012,149 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	31,666,118 - 31,683,572 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	30,840,545 - 30,857,999 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	31,220,566 - 31,238,495 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,223,074 - 31,238,026 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	34,831,057 - 34,848,558 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	31,039,805 - 31,055,914 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	11	29,976,897 - 29,991,831 (-)	NCBI		Celera
Cytogenetic Map	11	q11	NCBI

EPCIP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	28,903,874 - 28,924,829 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	23,763,834 - 23,784,820 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	19,153,434 - 19,174,752 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	21	32,529,572 - 32,552,595 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	21	32,532,656 - 32,552,541 (-)	Ensembl	panpan1.1		panPan2

EPCIP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	27,457,591 - 27,496,423 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	27,460,093 - 27,460,752 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	27,453,873 - 27,454,532 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	27,656,918 - 27,695,885 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	27,659,383 - 27,660,042 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	27,525,390 - 27,526,049 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	27,537,370 - 27,538,029 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	28,044,739 - 28,045,398 (-)	NCBI		UU_Cfam_GSD_1.0

Epcip
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	28,038,572 - 28,055,382 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	9,427,898 - 9,428,617 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	9,412,507 - 9,429,250 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

EPCIP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	196,387,383 - 196,404,714 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	196,387,380 - 196,404,856 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	206,399,336 - 206,416,823 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

EPCIP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	59,346,296 - 59,367,721 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	59,366,479 - 59,367,135 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666071	1,886,621 - 1,907,779 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Epcip
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	21,034,962 - 21,035,675 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624745	21,031,717 - 21,064,616 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005375674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01007671	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDJ01114206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_005375674 ⟹ XP_005375731

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955407	32,229,108 - 32,249,097 (-)	NCBI

Sequence:

show sequence

CGGTCGCCTCTGGAAACAACCCAGTTTACAGCCCAGAAAGATGTTCCACAGTTTCTCTCCTGCT
GTGTGGTTGATGAAACTGGTAGGCCAGCCACTTCCTCCTGGTTGCCATGGAAACAGTTAGGCCG
CCGGCCCTCAGAAAACGGAAAAGTACAGCATGTGCAAGACCACGCATTCCACCCTGGCTTGCAG
ATTAAACCAGCTGTCAAGCCCGGGTGAAGGATCAGCGGCCGGGTGGAGGCAGTCAGGGCGGACA
GACAAGGCACCACCGTGCAACTCTAAGATGTAAGTTGCAATGAATTGGCTCCTGGAGGAGTAGC
AGGAGCGCACTAGCCCACACCCAGCAGGAATGGCCCTGCCTTCCAGACACTGCCTCCTTCTGAT
CGGCGCACTGAGCATCTTCATACTTGACTGCTTCACCAAAGGTCAGAAGAACAGCACGCTAATT
TTCACAAAGCAGAACACCATTCGGAACTGCAGCTGCTCTGCAGACATCCGGGACTGTGACTACA
GTTTGGCCAACCTGATGTGCAGCTGTAAAACCGTCCTGCCTTTTGCAGTAGAGCGAAGCAGCTA
CAGTGGCCATCTGACCATCTGGTTCACGGACTCATCAGTGCTGGGCCGCCTGTTGAACTTCACT
CTGGTCCAGGACCTGAAGCTTTCTCTGTGCAGCTCCAACACCCTTCCCACCAAGTACCTGGCTA
TTTGTGGGCTGAAGAGGCTTCGCATCAGCACAGAGGCCAAGTATCCCTTCCCGGAGCAGAGCTT
ACTCATCCATACCACTGGGGACGCCGACTCCCGAGCGCTGCCCACATCATTACACAAAGGCTGG
CAAACGTGTATGTATATTTCATTCTTAGATGTGGCTCTTTTCAACAGGGACTCATCCTTAAAAT
CATACAGTATTGAAAACATTGCCAGCATTGCCCATGAATTTCCTGACTTTTCTTACTTTAAAGC
CTTCCCAATGCCAAGCAACAAAAGCTATGTTGTCACTGTCATTTACTAATGTTGTAACTGTGTC
CAACAGCCAGGAGACTTGGTAACAGACGCGTCATTTAAACAAGGAATCTGGGAACAGGGCCATC
AGACAGGTATCCCCACTCACGGCTCAGCCGTGGCCCCCAGCTCCCACTGGCAGCTGAGCCACGC
CTACAAATATCCAGCTTTCTCTGCTCTACTCTACACTCAATCTTGGGAGCTATTTTGAAAAGGA
AAGTAAAAAGAAATCTGAAACAAATGATTCAGTCTGTAGCCAAGTCTTACAGATCAGCTAGAGG
CTAGATCTTTGCAACGGGGAGCCTGGGAAGAGATGTCAGACCAGAAGTACAAAAAGTTGGAGTC
TGTAGGGTATCTTCTTTCAGAATACAGGTGTTCCCACTTCTCTGTGGGTGATCTATTACAAGGA
CCCCTGGTGGATGCCTGAAATAGCAGACAGTACCAAACTCTACACAGACATGTTTTTCCTACAC
GTACCTATGATAAAGTTTAATTTGTAAGTTAGGTTACAGACTAATGACAATCACCAATGATAGA
ACAATTATAGTAATATTTGTAATAAAATTATGCAAATGTG

hide sequence

Protein Sequences


Protein RefSeqs	XP_005375731	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014177.1

RefSeq Acc Id:

XP_005375731 ⟸ XM_005375674

- UniProtKB:

A0A8C2VFP3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MALPSRHCLLLIGALSIFILDCFTKGQKNSTLIFTKQNTIRNCSCSADIRDCDYSLANLMCSCK
TVLPFAVERSSYSGHLTIWFTDSSVLGRLLNFTLVQDLKLSLCSSNTLPTKYLAICGLKRLRIS
TEAKYPFPEQSLLIHTTGDADSRALPTSLHKGWQTCMYISFLDVALFNRDSSLKSYSIENIASI
AHEFPDFSYFKAFPMPSNKSYVVTVIY

hide sequence

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000009787	UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000014335.1	UniProtKB/TrEMBL
InterPro	DUF4571	UniProtKB/TrEMBL
NCBI Gene	LOC102017952	ENTREZGENE
PANTHER	RCG58666, ISOFORM CRA_A	UniProtKB/TrEMBL
	RCG58666, ISOFORM CRA_A	UniProtKB/TrEMBL
Pfam	DUF4571	UniProtKB/TrEMBL
UniProt	A0A8C2VFP3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-11-07	Epcip	exosomal polycystin 1 interacting protein	CUNH21orf62	chromosome unknown C21orf62 homolog	Symbol and/or name change	5135510	APPROVED
2021-05-11	CUNH21orf62	chromosome unknown C21orf62 homolog	LOC102017952	chromosome unknown open reading frame, human C21orf62	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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