Trank1 (tetratricopeptide repeat and ankyrin repeat containing 1) - Rat Genome Database

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Gene: Trank1 (tetratricopeptide repeat and ankyrin repeat containing 1) Mus musculus
Analyze
Symbol: Trank1
Name: tetratricopeptide repeat and ankyrin repeat containing 1
RGD ID: 1618803
MGI Page MGI
Description: Is expressed in adrenal cortex; central nervous system; frenulum; lung; and seminiferous cord. Orthologous to human TRANK1 (tetratricopeptide repeat and ankyrin repeat containing 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: A230061D21Rik; C030048J01Rik; Gm187; Lb; Lba1; lupus brain antigen 1; TPR and ankyrin repeat-containing protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399111,140,351 - 111,224,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9111,140,807 - 111,224,843 (+)EnsemblGRCm39 Ensembl
GRCm389111,311,283 - 111,395,775 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9111,311,739 - 111,395,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv379111,214,243 - 111,298,279 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369111,219,636 - 111,240,591 (+)NCBIMGSCv36mm8
Celera9111,038,156 - 111,123,540 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map960.95NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9585807   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14621295   PMID:16141072   PMID:16141073   PMID:18287559   PMID:21267068  
PMID:25855264   PMID:32325033   PMID:38355793  


Genomics

Comparative Map Data
Trank1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399111,140,351 - 111,224,843 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9111,140,807 - 111,224,843 (+)EnsemblGRCm39 Ensembl
GRCm389111,311,283 - 111,395,775 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9111,311,739 - 111,395,775 (+)EnsemblGRCm38mm10GRCm38
MGSCv379111,214,243 - 111,298,279 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv369111,219,636 - 111,240,591 (+)NCBIMGSCv36mm8
Celera9111,038,156 - 111,123,540 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map960.95NCBI
TRANK1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38336,826,819 - 36,945,744 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl336,826,819 - 36,945,057 (-)EnsemblGRCh38hg38GRCh38
GRCh37336,868,310 - 36,986,545 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36336,843,315 - 36,877,415 (-)NCBINCBI36Build 36hg18NCBI36
Celera336,811,078 - 36,929,308 (-)NCBICelera
Cytogenetic Map3p22.2NCBI
HuRef336,808,964 - 36,927,088 (-)NCBIHuRef
CHM1_1336,818,551 - 36,938,172 (-)NCBICHM1_1
T2T-CHM13v2.0336,828,168 - 36,947,110 (-)NCBIT2T-CHM13v2.0
Trank1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88120,153,381 - 120,233,879 (+)NCBIGRCr8
mRatBN7.28111,275,973 - 111,355,491 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8111,276,354 - 111,355,092 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx8116,892,440 - 116,970,177 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08115,091,671 - 115,169,416 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08112,934,500 - 113,012,248 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.08119,566,509 - 119,644,249 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8119,566,509 - 119,644,249 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.08118,916,156 - 118,993,803 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.48115,701,554 - 115,781,013 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera8110,557,993 - 110,635,930 (+)NCBICelera
Cytogenetic Map8q32NCBI
Trank1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554213,707,510 - 3,853,868 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554213,707,510 - 3,852,886 (-)NCBIChiLan1.0ChiLan1.0
TRANK1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2236,788,485 - 36,907,530 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1336,793,249 - 36,912,330 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0336,732,939 - 36,852,023 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1337,023,455 - 37,141,982 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl337,024,909 - 37,102,299 (-)Ensemblpanpan1.1panPan2
TRANK1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,749,817 - 6,849,113 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,631,276 - 6,849,034 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha236,789,473 - 6,869,908 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,034,999 - 7,115,474 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl236,946,464 - 7,134,352 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1236,854,618 - 6,935,467 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0236,997,235 - 7,077,671 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0236,987,132 - 7,067,610 (-)NCBIUU_Cfam_GSD_1.0
Trank1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118193,265,171 - 193,365,150 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647326,403,681 - 26,482,721 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647326,403,786 - 26,481,284 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TRANK1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1321,938,966 - 22,023,156 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11321,913,400 - 22,023,165 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21323,906,064 - 23,912,672 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TRANK1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1152,464,289 - 2,583,314 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl152,502,023 - 2,581,141 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606311,201,749 - 11,319,415 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Trank1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478814,922,497 - 15,065,624 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478814,926,685 - 15,035,745 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Trank1
2383 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:578
Count of miRNA genes:386
Interacting mature miRNAs:437
Transcripts:ENSMUST00000078626
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141833W10q13_mweight 10 weeks QTL 13 (mouse)Not determined63239711120191934Mouse
4141545Tailaq2_mtail length adjusted QTL 2 (mouse)Not determined63239711120191934Mouse
1357635Splq4_mspleen weight QTL 4 (mouse)Not determined963239711120191934Mouse
1302065El1_mepilepsy 1 (mouse)Not determined975682646114303447Mouse
10054492El7_mepilepsy 7 (mouse)Not determined975682646114303447Mouse
1301192Skts6_mskin tumor susceptibility 6 (mouse)Not determined978522698112522808Mouse
10401247Bglu14_mblood glucose level 14 (mouse)Not determined979279863113279941Mouse
1301732Char1_mP. chabaudi malaria resistance QTL 1 (mouse)Not determined981680321115680445Mouse
10766454Char10_mP. chabaudi malaria resistance QTL 10 (mouse)982792386116792481Mouse
1300884Sluc11_msusceptibility to lung cancer 11 (mouse)Not determined982792386116792481Mouse
1357461Idd2_minsulin dependent diabetes susceptibility 2 (mouse)Not determined982792386116792481Mouse
1301487Nociq1_mnociceptive sensitivity inflammatory QTL 1 (mouse)Not determined984406017118406120Mouse
1300549Bbaa17_mB. burgdorferi-associated arthritis 17 (mouse)Not determined986107600120107729Mouse
1302103Dob2_mdietary obesity 2 (mouse)Not determined986121898120118690Mouse
11251716Siim2_mstress induced immobility 2 (mouse)986625682120625682Mouse
12880422V25Dq6_mvitamin D inactive form serum level QTL 6 (mouse)987677199121677199Mouse
10412242Alpq8_malcohol preference QTL 8 (mouse)Not determined989162124123162124Mouse
1301649Psl1_mpromotion susceptibility QTL 1 (mouse)Not determined989289476123289595Mouse
18182932Metl3_mmetabolite locus 3, N-acetylglutamate (mouse)989440541123440541Mouse
1357657Pymr_mPlasmodium yoelli malaria resistance (mouse)Not determined989859058118767089Mouse
12910770Splic1_mspleen iron content 1 (mouse)991291078124359700Mouse
12910772Lvic6_mliver iron content 6 (mouse)991291078124359700Mouse
12910773Splic3_mspleen iron content 3 (mouse)991291078124359700Mouse
1558767Skmw11_mskeletal muscle weight 11 (mouse)Not determined991518283124359700Mouse
13463474Hbbcq5_mhemoglobin concentration QTL 5 (mouse)991518283124359700Mouse
13463475Hctq7_mhematocrit QTL 7 (mouse)991518283124359700Mouse
13463477Rbc9_mred blood cell count 9 (mouse)991518283124359700Mouse
13463478Mchq18_mmean corpuscular hemoglobin QTL 18 (mouse)991518283124359700Mouse
13463480Mchcq2_mmean corpuscular hemoglobin concentration QTL 2 (mouse)991518283124359700Mouse
12904937Edlmmq9_mextensor digitorum longus muscle mass QTL 9 (mouse)991560372124359700Mouse
12904947Tammq7_mtibialis anterior muscle mass QTL 7 (mouse)991560372124359700Mouse
12904961Gmmq7_mgastrocnemius muscle mass QTL 7 (mouse)991560372124359700Mouse
1301484Bwq6_mbody weight (mouse)Not determined993591658124359700Mouse
1302001Bdln5_mbody length 5 (mouse)Not determined993591658124359700Mouse
14746992Manh67_mmandible shape 67 (mouse)993865836124359700Mouse
11081166Psl5_mpromotion susceptibility QTL 5 (mouse)994863354112701997Mouse
11537364Cnes5_mC. neoformans susceptibility locus 5 (mouse)996746658124359700Mouse
1301297Lcho1_mliver cholesterol 1 (mouse)Not determined9100889929124359700Mouse
1357648Obq18_mobesity QTL 18 (mouse)Not determined9101829255124359700Mouse
1357627Tgq2_mtriglyceride QTL 2 (mouse)Not determined9101829255124359700Mouse
10412290Pvacm1l_mplasma vascular cell adhesion molecule 1 levels (mouse)Not determined9103118511124359700Mouse
12879896Berr3_mberghei resistance locus 3 (mouse)9103118511124359700Mouse
1301789Pbwg4_mpostnatal body weight growth 4 (mouse)Not determined9103118511124359700Mouse
13515058Adip20d_madiposity 20d (mouse)9108744078118744078Mouse

Markers in Region
D9Mit350  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389111,360,411 - 111,360,536UniSTSGRCm38
MGSCv379111,262,915 - 111,263,040UniSTSGRCm37
Celera9111,088,176 - 111,088,303UniSTS
Cytogenetic Map9F3UniSTS
cM Map961.0UniSTS
Whitehead Genetic960.1UniSTS
Whitehead_YAC9 UniSTS
D9Dcr119  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm389111,360,416 - 111,360,516UniSTSGRCm38
MGSCv379111,262,920 - 111,263,020UniSTSGRCm37
Celera9111,088,181 - 111,088,284UniSTS
Cytogenetic Map9F3UniSTS
cM Map9 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001164659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512163 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006512164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017313432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003947933 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004935454 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379871 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_379872 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC113495 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC126677 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021160 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK079552 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129119 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC086653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY728326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000078626   ⟹   ENSMUSP00000077697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9111,140,807 - 111,224,843 (+)Ensembl
GRCm38.p6 Ensembl9111,311,739 - 111,395,775 (+)Ensembl
RefSeq Acc Id: ENSMUST00000196945
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9111,203,888 - 111,224,843 (+)Ensembl
GRCm38.p6 Ensembl9111,374,820 - 111,395,775 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197049   ⟹   ENSMUSP00000143534
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9111,141,164 - 111,174,561 (+)Ensembl
GRCm38.p6 Ensembl9111,312,096 - 111,345,493 (+)Ensembl
RefSeq Acc Id: ENSMUST00000197650
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9111,215,412 - 111,219,222 (+)Ensembl
GRCm38.p6 Ensembl9111,386,344 - 111,390,154 (+)Ensembl
RefSeq Acc Id: ENSMUST00000198890
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9111,203,951 - 111,218,304 (+)Ensembl
GRCm38.p6 Ensembl9111,374,883 - 111,389,236 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200151
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9111,141,008 - 111,187,029 (+)Ensembl
GRCm38.p6 Ensembl9111,311,940 - 111,357,961 (+)Ensembl
RefSeq Acc Id: ENSMUST00000200272
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl9111,203,956 - 111,214,410 (+)Ensembl
GRCm38.p6 Ensembl9111,374,888 - 111,385,342 (+)Ensembl
RefSeq Acc Id: NM_001164659   ⟹   NP_001158131
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,807 - 111,224,843 (+)NCBI
GRCm389111,311,739 - 111,395,775 (+)NCBI
MGSCv379111,214,243 - 111,298,279 (+)RGD
Celera9111,038,156 - 111,123,540 (+)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006512160   ⟹   XP_006512223
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,224,843 (+)NCBI
GRCm389111,311,283 - 111,395,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512161   ⟹   XP_006512224
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,224,843 (+)NCBI
GRCm389111,311,283 - 111,395,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512162   ⟹   XP_006512225
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,224,843 (+)NCBI
GRCm389111,311,283 - 111,395,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512163   ⟹   XP_006512226
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,641 - 111,224,843 (+)NCBI
GRCm389111,311,600 - 111,395,775 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006512164   ⟹   XP_006512227
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,213,802 (+)NCBI
GRCm389111,311,283 - 111,384,734 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017313432   ⟹   XP_017168921
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,224,843 (+)NCBI
GRCm389111,311,283 - 111,395,775 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003947933
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,208,017 (+)NCBI
GRCm389111,311,283 - 111,378,949 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004935454
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,219,199 (+)NCBI
Sequence:
RefSeq Acc Id: XR_379871
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,220,952 (+)NCBI
GRCm389111,311,283 - 111,391,884 (+)NCBI
Sequence:
RefSeq Acc Id: XR_379872
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm399111,140,351 - 111,208,017 (+)NCBI
GRCm389111,311,283 - 111,378,949 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_001158131   ⟸   NM_001164659
- UniProtKB: Q5RJH5 (UniProtKB/Swiss-Prot),   Q6ZQD5 (UniProtKB/Swiss-Prot),   Q8BV79 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006512226   ⟸   XM_006512163
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_006512223   ⟸   XM_006512160
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006512224   ⟸   XM_006512161
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006512225   ⟸   XM_006512162
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006512227   ⟸   XM_006512164
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_017168921   ⟸   XM_017313432
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: ENSMUSP00000143534   ⟸   ENSMUST00000197049
RefSeq Acc Id: ENSMUSP00000077697   ⟸   ENSMUST00000078626

Promoters
RGD ID:8671060
Promoter ID:EPDNEW_M13561
Type:multiple initiation site
Name:Trank1_1
Description:Mus musculus tetratricopeptide repeat and ankyrin repeat containing1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm389111,311,834 - 111,311,894EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1341834 AgrOrtholog
Ensembl Genes ENSMUSG00000062296 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000078626 ENTREZGENE
  ENSMUST00000078626.8 UniProtKB/Swiss-Prot
  ENSMUST00000197049.2 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.20 UniProtKB/Swiss-Prot
  3.40.50.300 UniProtKB/Swiss-Prot
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANK1 UniProtKB/Swiss-Prot
KEGG Report mmu:320429 UniProtKB/Swiss-Prot
MGD MGI:1341834 ENTREZGENE
NCBI Gene 320429 ENTREZGENE
PANTHER PTHR21529 UniProtKB/Swiss-Prot
  TPR AND ANKYRIN REPEAT-CONTAINING PROTEIN 1 UniProtKB/Swiss-Prot
PhenoGen Trank1 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot
  TPR_REGION UniProtKB/Swiss-Prot
SMART ANK UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot
  SSF48452 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF52540 UniProtKB/Swiss-Prot
UniProt A0A0G2JGE4_MOUSE UniProtKB/TrEMBL
  Q5RJH5 ENTREZGENE
  Q6ZQD5 ENTREZGENE
  Q8BV79 ENTREZGENE
  Q9D1V3_MOUSE UniProtKB/TrEMBL
  TRNK1_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q5RJH5 UniProtKB/Swiss-Prot
  Q6ZQD5 UniProtKB/Swiss-Prot