Cttnbp2 (cortactin binding protein 2) - Rat Genome Database

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Gene: Cttnbp2 (cortactin binding protein 2) Mus musculus
Analyze
Symbol: Cttnbp2
Name: cortactin binding protein 2
RGD ID: 1617585
MGI Page MGI
Description: Predicted to enable SH3 domain binding activity and cytoskeletal regulatory protein binding activity. Predicted to be involved in regulation of modification of postsynaptic actin cytoskeleton. Predicted to act upstream of or within actin cytoskeleton organization. Is active in glutamatergic synapse and postsynaptic actin cytoskeleton. Is expressed in brain; dorsal grey horn; glans of male genital tubercle; intestine smooth muscle circular layer; and limb. Orthologous to human CTTNBP2 (cortactin binding protein 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 3010022N24Rik; 4732477G22Rik; 6430526E05; 9130022E09Rik; AU040881; Cort; cortactin-binding protein 2; cortactin-binding protein 2 intron retention form; Cortbp2; CTTNBP2 intron retention form; mKIAA1758; ORF4
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39618,366,470 - 18,515,216 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl618,366,477 - 18,514,842 (-)EnsemblGRCm39 Ensembl
GRCm38618,366,471 - 18,515,217 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl618,366,478 - 18,514,843 (-)EnsemblGRCm38mm10GRCm38
MGSCv37618,316,477 - 18,464,825 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36618,316,472 - 18,464,869 (-)NCBIMGSCv36mm8
Celera618,439,130 - 18,588,875 (-)NCBICelera
Cytogenetic Map6A2NCBI
cM Map68.12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10655503   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11707066   PMID:12466851   PMID:12477932   PMID:15368895  
PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22262902   PMID:24952961   PMID:26930384   PMID:27507650   PMID:27626380   PMID:27889896   PMID:28671696  
PMID:30973865   PMID:32325033   PMID:32492416   PMID:33168105   PMID:33953184   PMID:34321999   PMID:34915728   PMID:35562389  


Genomics

Comparative Map Data
Cttnbp2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39618,366,470 - 18,515,216 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl618,366,477 - 18,514,842 (-)EnsemblGRCm39 Ensembl
GRCm38618,366,471 - 18,515,217 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl618,366,478 - 18,514,843 (-)EnsemblGRCm38mm10GRCm38
MGSCv37618,316,477 - 18,464,825 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36618,316,472 - 18,464,869 (-)NCBIMGSCv36mm8
Celera618,439,130 - 18,588,875 (-)NCBICelera
Cytogenetic Map6A2NCBI
cM Map68.12NCBI
CTTNBP2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh387117,710,651 - 117,873,441 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl7117,710,651 - 117,874,139 (-)EnsemblGRCh38hg38GRCh38
GRCh377117,350,705 - 117,513,495 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 367117,137,941 - 117,300,797 (-)NCBINCBI36Build 36hg18NCBI36
Build 347116,944,658 - 117,107,512NCBI
Celera7112,158,873 - 112,321,703 (-)NCBICelera
Cytogenetic Map7q31.31NCBI
HuRef7111,716,178 - 111,879,317 (-)NCBIHuRef
CHM1_17117,284,164 - 117,447,123 (-)NCBICHM1_1
T2T-CHM13v2.07119,026,042 - 119,189,157 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v27116,746,141 - 116,908,979 (-)NCBI
Cttnbp2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8447,766,867 - 47,930,598 (-)NCBIGRCr8
mRatBN7.2446,800,975 - 46,964,681 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl446,800,981 - 46,964,631 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx451,794,547 - 51,957,758 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0447,715,681 - 47,878,895 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0446,139,573 - 46,302,508 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0442,932,897 - 43,096,454 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl442,932,903 - 43,096,399 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0442,516,933 - 42,680,639 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4444,114,097 - 44,277,748 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1444,402,924 - 44,507,501 (-)NCBI
Celera442,060,024 - 42,223,096 (-)NCBICelera
Cytogenetic Map4q22NCBI
Cttnbp2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543223,364,933 - 23,518,550 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543223,364,193 - 23,527,300 (-)NCBIChiLan1.0ChiLan1.0
CTTNBP2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26154,535,118 - 154,697,070 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan176,545,375 - 6,707,311 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v07109,675,275 - 109,837,178 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17122,369,733 - 122,531,604 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7122,370,616 - 122,520,397 (-)Ensemblpanpan1.1panPan2
CTTNBP2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11456,514,114 - 56,665,437 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1456,514,381 - 56,657,958 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1455,909,374 - 56,053,305 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01456,553,566 - 56,624,854 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.11456,592,187 - 56,735,831 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01456,273,353 - 56,344,334 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01456,644,651 - 56,715,671 (-)NCBIUU_Cfam_GSD_1.0
Cttnbp2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511845,166,957 - 45,304,112 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365891,393,141 - 1,522,048 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365891,385,342 - 1,522,911 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CTTNBP2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1828,415,067 - 28,573,159 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11828,130,213 - 28,573,166 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21830,230,103 - 30,342,035 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CTTNBP2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12186,376,005 - 86,539,662 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2186,376,011 - 86,527,223 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604217,181,391 - 17,344,562 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cttnbp2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248271,481,082 - 1,655,871 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248271,481,082 - 1,656,279 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cttnbp2
5797 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2250
Count of miRNA genes:769
Interacting mature miRNAs:1012
Transcripts:ENSMUST00000090601, ENSMUST00000129669, ENSMUST00000139557, ENSMUST00000140416, ENSMUST00000141581, ENSMUST00000142963, ENSMUST00000146775, ENSMUST00000148602, ENSMUST00000149570, ENSMUST00000152499
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
26884441Sklq3_mskull length QTL 3, 5 week (mouse)6760000080576983Mouse
1302051Sluc7_msusceptibility to lung cancer 7 (mouse)Not determined6929707443297168Mouse
10043869Cia6a_mcollagen induced arthritis QTL 6a (mouse)Not determined61211797146118069Mouse
4141749Obrq2_mobesity resistance QTL 2 (mouse)Not determined1275122146751333Mouse
1301998Bts2_mbladder tumor susceptibility 2 (mouse)Not determined61275122146751333Mouse
27226726Tibmd7_mtibia midshaft diameter 7, 16 week (mouse)61769999953476985Mouse
1301850Fglu_mfasting glucose (mouse)Not determined61771159851711719Mouse
1301724Pcd4ts1_mp-glycoprotein positive CD4 T cell subset 1 (mouse)Not determined61771159851711719Mouse
4140989Spqq2_msperm quality QTL 2 (mouse)Not determined1771159851711719Mouse
1357442Dbts1_mdiabetes 1 (mouse)Not determined61823414773364675Mouse

Markers in Region
09.MMHAP76FRC9.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38618,483,998 - 18,484,147UniSTSGRCm38
MGSCv37618,433,998 - 18,434,147UniSTSGRCm37
Celera618,556,959 - 18,557,108UniSTS
Cytogenetic Map6A2UniSTS
Whitehead_YAC6 UniSTS
AI045527  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38618,366,773 - 18,366,966UniSTSGRCm38
MGSCv37618,316,773 - 18,316,966UniSTSGRCm37
Celera618,439,426 - 18,439,619UniSTS
Cytogenetic Map6A2UniSTS
AU040881  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38618,366,786 - 18,366,929UniSTSGRCm38
MGSCv37618,316,786 - 18,316,929UniSTSGRCm37
Celera618,439,439 - 18,439,582UniSTS
Cytogenetic Map6A2UniSTS
REN62252  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38618,433,810 - 18,434,041UniSTSGRCm38
MGSCv37618,383,810 - 18,384,041UniSTSGRCm37
Celera618,506,455 - 18,506,686UniSTS
Cytogenetic Map6A2UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_080285 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_149735 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505104 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011241065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC027654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC158663 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AE017189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF162137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK019384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK021092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028980 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK078315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK081137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK173254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC068156 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC141407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK008721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK008722 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000090601   ⟹   ENSMUSP00000088089
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,367,220 - 18,514,820 (-)Ensembl
GRCm38.p6 Ensembl618,367,221 - 18,514,821 (-)Ensembl
RefSeq Acc Id: ENSMUST00000129669   ⟹   ENSMUSP00000116878
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,435,250 - 18,513,090 (-)Ensembl
GRCm38.p6 Ensembl618,435,251 - 18,513,091 (-)Ensembl
RefSeq Acc Id: ENSMUST00000139557
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,431,939 - 18,514,798 (-)Ensembl
GRCm38.p6 Ensembl618,431,940 - 18,514,799 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140416
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,501,625 - 18,514,842 (-)Ensembl
GRCm38.p6 Ensembl618,501,626 - 18,514,843 (-)Ensembl
RefSeq Acc Id: ENSMUST00000141581   ⟹   ENSMUSP00000123162
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,389,144 - 18,408,693 (-)Ensembl
GRCm38.p6 Ensembl618,389,145 - 18,408,694 (-)Ensembl
RefSeq Acc Id: ENSMUST00000142963   ⟹   ENSMUSP00000122590
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,448,249 - 18,502,055 (-)Ensembl
GRCm38.p6 Ensembl618,448,250 - 18,502,056 (-)Ensembl
RefSeq Acc Id: ENSMUST00000146775   ⟹   ENSMUSP00000119383
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,366,564 - 18,434,450 (-)Ensembl
GRCm38.p6 Ensembl618,366,565 - 18,434,451 (-)Ensembl
RefSeq Acc Id: ENSMUST00000148602   ⟹   ENSMUSP00000118432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,366,706 - 18,514,748 (-)Ensembl
GRCm38.p6 Ensembl618,366,707 - 18,514,749 (-)Ensembl
RefSeq Acc Id: ENSMUST00000152499
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl618,366,477 - 18,428,230 (-)Ensembl
GRCm38.p6 Ensembl618,366,478 - 18,428,231 (-)Ensembl
RefSeq Acc Id: NM_080285   ⟹   NP_525024
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39618,366,471 - 18,514,868 (-)NCBI
GRCm38618,366,472 - 18,514,869 (-)NCBI
MGSCv37618,316,477 - 18,464,825 (-)RGD
Celera618,439,130 - 18,588,875 (-)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_149735
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39618,366,471 - 18,514,868 (-)NCBI
GRCm38618,366,472 - 18,514,869 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006505104   ⟹   XP_006505167
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39618,366,470 - 18,515,216 (-)NCBI
GRCm38618,366,471 - 18,515,217 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011241065   ⟹   XP_011239367
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39618,376,091 - 18,515,216 (-)NCBI
GRCm38618,376,095 - 18,515,217 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_525024   ⟸   NM_080285
- UniProtKB: Q8BVG1 (UniProtKB/Swiss-Prot),   Q69ZB2 (UniProtKB/Swiss-Prot),   G3X9L7 (UniProtKB/Swiss-Prot),   Q8C044 (UniProtKB/Swiss-Prot),   B9EJA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006505167   ⟸   XM_006505104
- Peptide Label: isoform X1
- UniProtKB: B9EJA2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011239367   ⟸   XM_011241065
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSMUSP00000088089   ⟸   ENSMUST00000090601
RefSeq Acc Id: ENSMUSP00000119383   ⟸   ENSMUST00000146775
RefSeq Acc Id: ENSMUSP00000116878   ⟸   ENSMUST00000129669
RefSeq Acc Id: ENSMUSP00000118432   ⟸   ENSMUST00000148602
RefSeq Acc Id: ENSMUSP00000122590   ⟸   ENSMUST00000142963
RefSeq Acc Id: ENSMUSP00000123162   ⟸   ENSMUST00000141581
Protein Domains
Cortactin-binding protein-2 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-B9EJA2-F1-model_v2 AlphaFold B9EJA2 1-1648 view protein structure

Promoters
RGD ID:6839145
Promoter ID:MM_KWN:45248
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000060059
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36618,358,326 - 18,358,826 (-)MPROMDB
RGD ID:6839142
Promoter ID:MM_KWN:45251
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000059134
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36618,384,051 - 18,384,802 (-)MPROMDB
RGD ID:6839144
Promoter ID:MM_KWN:45253
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Lung
Transcripts:OTTMUST00000059133,   OTTMUST00000059136,   OTTMUST00000060057,   UC009BAM.1,   UC009BAN.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36618,464,464 - 18,464,964 (-)MPROMDB
RGD ID:6889074
Promoter ID:EPDNEW_M7988
Type:single initiation site
Name:Cttnbp2_2
Description:Mus musculus cortactin binding protein 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7989  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38618,466,694 - 18,466,754EPDNEW
RGD ID:6889076
Promoter ID:EPDNEW_M7989
Type:initiation region
Name:Cttnbp2_1
Description:Mus musculus cortactin binding protein 2 , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M7988  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38618,514,759 - 18,514,819EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1353467 AgrOrtholog
Ensembl Genes ENSMUSG00000000416 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000090601 ENTREZGENE
  ENSMUST00000090601.12 UniProtKB/Swiss-Prot
  ENSMUST00000129669.8 UniProtKB/TrEMBL
  ENSMUST00000141581.2 UniProtKB/TrEMBL
  ENSMUST00000142963.3 UniProtKB/TrEMBL
  ENSMUST00000146775.8 UniProtKB/TrEMBL
  ENSMUST00000148602 ENTREZGENE
  ENSMUST00000148602.8 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ankyrin_rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ankyrin_rpt-contain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Cortactin-binding_p2_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:30785 UniProtKB/Swiss-Prot
MGD MGI:1353467 ENTREZGENE
NCBI Gene 30785 ENTREZGENE
PANTHER CORTACTIN-BINDING PROTEIN 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CTTNBP2 N-TERMINAL-LIKE PROTEIN UniProtKB/TrEMBL
  FILAMIN/GPBP-INTERACTING PROTEIN UniProtKB/TrEMBL
  ROLLING PEBBLES, ISOFORM B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ank_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  CortBP2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cttnbp2 PhenoGen
PROSITE ANK_REP_REGION UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ANK_REPEAT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART ANK UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48403 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B9EJA2 ENTREZGENE, UniProtKB/Swiss-Prot
  D3Z1E3_MOUSE UniProtKB/TrEMBL
  D3Z551_MOUSE UniProtKB/TrEMBL
  F6Q1W8_MOUSE UniProtKB/TrEMBL
  F6XSM7_MOUSE UniProtKB/TrEMBL
  G3X9L7 ENTREZGENE
  Q69ZB2 ENTREZGENE
  Q8BVG1 ENTREZGENE
  Q8C044 ENTREZGENE
  R7RU63_MOUSE UniProtKB/TrEMBL
  R7RVD4_MOUSE UniProtKB/TrEMBL
UniProt Secondary G3X9L7 UniProtKB/Swiss-Prot
  Q69ZB2 UniProtKB/Swiss-Prot
  Q8BVG1 UniProtKB/Swiss-Prot
  Q8C044 UniProtKB/Swiss-Prot