Cimap1c (ciliary microtubule associated protein 1C) - Rat Genome Database

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Gene: Cimap1c (ciliary microtubule associated protein 1C) Mus musculus
Analyze
Symbol: Cimap1c (Ensembl: Odf3l1)
Name: ciliary microtubule associated protein 1C (Ensembl:outer dense fiber of sperm tails 3-like 1)
RGD ID: 1614770
MGI Page MGI
Description: Predicted to be active in cytoskeleton. Orthologous to human CIMAP1C (ciliary microtubule associated protein 1C).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: BC049697; Gm1116; MGC58606; Odf3l1; outer dense fiber of sperm tails 3-like 1; outer dense fiber protein 3-like protein 1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39956,755,940 - 56,779,199 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl956,755,943 - 56,771,963 (-)EnsemblGRCm39 Ensembl
GRCm38956,848,656 - 56,860,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl956,848,659 - 56,864,679 (-)EnsemblGRCm38mm10GRCm38
MGSCv37956,696,466 - 56,699,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36956,646,796 - 56,650,100 (-)NCBIMGSCv36mm8
Celera954,073,795 - 54,077,102 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.28NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoskeleton  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21873635  


Genomics

Comparative Map Data
Cimap1c
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39956,755,940 - 56,779,199 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl956,755,943 - 56,771,963 (-)EnsemblGRCm39 Ensembl
GRCm38956,848,656 - 56,860,510 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl956,848,659 - 56,864,679 (-)EnsemblGRCm38mm10GRCm38
MGSCv37956,696,466 - 56,699,770 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36956,646,796 - 56,650,100 (-)NCBIMGSCv36mm8
Celera954,073,795 - 54,077,102 (-)NCBICelera
Cytogenetic Map9BNCBI
cM Map930.28NCBI
CIMAP1C
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381575,724,041 - 75,727,688 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1575,724,041 - 75,727,688 (+)EnsemblGRCh38hg38GRCh38
GRCh371576,016,382 - 76,020,029 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361573,803,374 - 73,807,082 (+)NCBINCBI36Build 36hg18NCBI36
Build 341573,803,373 - 73,807,082NCBI
Celera1552,942,002 - 52,945,710 (+)NCBICelera
Cytogenetic Map15q24.2NCBI
HuRef1552,772,592 - 52,776,300 (+)NCBIHuRef
CHM1_11576,135,799 - 76,139,507 (+)NCBICHM1_1
T2T-CHM13v2.01573,594,750 - 73,598,397 (+)NCBIT2T-CHM13v2.0
Cimap1c
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8866,144,726 - 66,176,985 (-)NCBIGRCr8
mRatBN7.2857,248,746 - 57,281,084 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl857,248,746 - 57,281,004 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx862,772,135 - 62,775,189 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0861,050,979 - 61,054,033 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0858,915,413 - 58,918,467 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0861,516,249 - 61,542,946 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl861,516,268 - 61,519,507 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0860,084,944 - 60,088,207 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4860,594,619 - 60,597,662 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1860,613,681 - 60,616,726 (-)NCBI
Celera856,716,851 - 56,719,894 (-)NCBICelera
Cytogenetic Map8q24NCBI
Cimap1c
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554502,614,261 - 2,617,324 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554502,614,377 - 2,617,064 (-)NCBIChiLan1.0ChiLan1.0
CIMAP1C
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21664,910,802 - 64,923,090 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11569,074,677 - 69,085,215 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01554,630,808 - 54,636,066 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11574,225,863 - 74,229,571 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1574,225,859 - 74,229,571 (+)Ensemblpanpan1.1panPan2
CIMAP1C
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13038,509,233 - 38,512,782 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3038,509,464 - 38,512,732 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3038,438,889 - 38,442,437 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03038,714,730 - 38,718,278 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.13038,665,278 - 38,668,831 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03038,711,135 - 38,714,700 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03038,947,977 - 38,951,525 (+)NCBIUU_Cfam_GSD_1.0
Cimap1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640116,636,484 - 116,641,485 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647134,484,748 - 34,489,508 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647134,484,748 - 34,489,508 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CIMAP1C
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl757,935,610 - 57,938,958 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1757,935,284 - 57,939,020 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2762,627,381 - 62,630,939 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LOC103245306
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1267,673,442 - 7,684,250 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl267,679,908 - 7,683,237 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236679755,978 - 9,548 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cimap1c
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624894603,852 - 606,607 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624894603,756 - 606,703 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cimap1c
675 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:151
Count of miRNA genes:145
Interacting mature miRNAs:151
Transcripts:ENSMUST00000055036
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
12790990Tgl7_mtriglyceride 7 (mouse)95455996088559960Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
13525008Hrtiq1_mheart rate time index, QTL 1 (mouse)95242609868556008Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
4141754Fecq4_mfecundity QTL 4 (mouse)Not determined94754302457805204Mouse
1301051Eae9_msusceptibility to experimental allergic encephalomyelitis 9 (mouse)Not determined94942029863239852Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
1301049El4_mepilepsy 4 (mouse)Not determined94942029867151448Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1300716Cd4ts4_mCD4 T cell subset 4 (mouse)Not determined94883105682831177Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse
1301241Renf1_mrenal failure 1 (mouse)Not determined95203447899792481Mouse
1301184Bdln4_mbody length 4 (mouse)Not determined95015132084151448Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
4141572Ntta3_mneurotensin transcript abundance 3 (mouse)Not determined4659767165831177Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141224Dxmod_mdoxorubicin nephropathy modifier (mouse)Not determined49452421101406120Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
10043877Adip21_madiposity 21 (mouse)Not determined95643910890439255Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
1300563Pgia5_mproteoglycan induced arthritis 5 (mouse)Not determined94883105682831177Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
14746993Manh66_mmandible shape 66 (mouse)94981404883814048Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000055036   ⟹   ENSMUSP00000060418
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl956,755,943 - 56,759,247 (-)Ensembl
GRCm38.p6 Ensembl956,848,659 - 56,851,963 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215694   ⟹   ENSMUSP00000149166
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl956,755,944 - 56,771,963 (-)Ensembl
GRCm38.p6 Ensembl956,848,660 - 56,864,679 (-)Ensembl
RefSeq Acc Id: NM_001374681   ⟹   NP_001361610
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39956,755,943 - 56,761,098 (-)NCBI
GRCm38956,848,659 - 56,853,814 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001411399   ⟹   NP_001398328
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39956,755,943 - 56,771,963 (-)NCBI
RefSeq Acc Id: NM_001411400   ⟹   NP_001398329
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39956,755,943 - 56,759,282 (-)NCBI
RefSeq Acc Id: NM_198673   ⟹   NP_941075
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39956,755,943 - 56,759,247 (-)NCBI
GRCm38956,848,659 - 56,851,963 (-)NCBI
MGSCv37956,696,466 - 56,699,770 (-)RGD
Celera954,073,795 - 54,077,102 (-)RGD
cM Map9 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006511248   ⟹   XP_006511311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39956,755,940 - 56,767,795 (-)NCBI
GRCm38956,848,656 - 56,860,510 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006511251   ⟹   XP_006511314
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39956,755,940 - 56,759,314 (-)NCBI
GRCm38956,848,656 - 56,852,030 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036155095   ⟹   XP_036010988
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39956,755,940 - 56,779,199 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_941075   ⟸   NM_198673
- Peptide Label: isoform 2
- UniProtKB: Q810P2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006511311   ⟸   XM_006511248
- Peptide Label: isoform X1
- UniProtKB: A0A1L1SQS6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006511314   ⟸   XM_006511251
- Peptide Label: isoform X2
- UniProtKB: Q810P2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001361610   ⟸   NM_001374681
- Peptide Label: isoform 1
- UniProtKB: A0A1L1SQS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000060418   ⟸   ENSMUST00000055036
RefSeq Acc Id: ENSMUSP00000149166   ⟸   ENSMUST00000215694
RefSeq Acc Id: XP_036010988   ⟸   XM_036155095
- Peptide Label: isoform X1
- UniProtKB: A0A1L1SQS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398328   ⟸   NM_001411399
- Peptide Label: isoform 1
- UniProtKB: A0A1L1SQS6 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398329   ⟸   NM_001411400
- Peptide Label: isoform 2
- UniProtKB: Q810P2 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q810P2-F1-model_v2 AlphaFold Q810P2 1-275 view protein structure

Promoters
RGD ID:8669702
Promoter ID:EPDNEW_M12881
Type:initiation region
Name:Odf3l1_1
Description:Mus musculus outer dense fiber of sperm tails 3-like 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38956,851,963 - 56,852,023EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2681875 AgrOrtholog
Ensembl Genes ENSMUSG00000045620 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000055036 ENTREZGENE
  ENSMUST00000055036.7 UniProtKB/Swiss-Prot
  ENSMUST00000215694 ENTREZGENE
  ENSMUST00000215694.2 UniProtKB/TrEMBL
InterPro SHIPPO-rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:382075 UniProtKB/Swiss-Prot
MGD MGI:2681875 ENTREZGENE
NCBI Gene 382075 ENTREZGENE
PANTHER OUTER DENSE FIBER PROTEIN 3-LIKE PROTEIN 1 UniProtKB/TrEMBL
  SHIPPO-1-RELATED UniProtKB/TrEMBL
Pfam SHIPPO-rpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Cimap1c PhenoGen
UniProt A0A1L1SQS6 ENTREZGENE, UniProtKB/TrEMBL
  OD3L1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-06-05 Cimap1c  ciliary microtubule associated protein 1C  Odf3l1  outer dense fiber of sperm tails 3-like 1  Symbol and/or name updated 27372883 PROVISIONAL