CIMAP1C (ciliary microtubule associated protein 1C)

Gene: CIMAP1C (ciliary microtubule associated protein 1C) Canis lupus familiaris

Analyze

Symbol:

CIMAP1C (Ensembl: ODF3L1)

Name:

ciliary microtubule associated protein 1C (Ensembl:outer dense fiber of sperm tails 3 like 1)

RGD ID:

12269472

Description:

ASSOCIATED WITH Bloom syndrome (ortholog); chromosome 15q24 deletion syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoskeleton (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

ODF3L1; outer dense fiber of sperm tails 3 like 1; outer dense fiber protein 3-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	38,509,233 - 38,512,782 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	38,509,464 - 38,512,732 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	38,438,889 - 38,442,437 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	38,714,730 - 38,718,278 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	30	38,665,278 - 38,668,831 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	38,711,135 - 38,714,700 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	38,947,977 - 38,951,525 (+)	NCBI		UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Bloom syndrome (ISO)

chromosome 15q24 deletion syndrome (ISO)

colorectal cancer (ISO)

epilepsy (ISO)

genetic disease (ISO)

schizophrenia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

cytoskeleton (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

CIMAP1C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	30	38,509,233 - 38,512,782 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	30	38,509,464 - 38,512,732 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	30	38,438,889 - 38,442,437 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	30	38,714,730 - 38,718,278 (+)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	30	38,665,278 - 38,668,831 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	30	38,711,135 - 38,714,700 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	30	38,947,977 - 38,951,525 (+)	NCBI		UU_Cfam_GSD_1.0

CIMAP1C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	15	75,724,041 - 75,727,688 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	15	75,724,041 - 75,727,688 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	15	76,016,382 - 76,020,029 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	15	73,803,374 - 73,807,082 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	15	73,803,373 - 73,807,082	NCBI
Celera	15	52,942,002 - 52,945,710 (+)	NCBI		Celera
Cytogenetic Map	15	q24.2	NCBI
HuRef	15	52,772,592 - 52,776,300 (+)	NCBI		HuRef
CHM1_1	15	76,135,799 - 76,139,507 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	15	73,594,750 - 73,598,397 (+)	NCBI		T2T-CHM13v2.0

Cimap1c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	56,755,940 - 56,779,199 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	56,755,943 - 56,771,963 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	56,848,656 - 56,860,510 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	56,848,659 - 56,864,679 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	56,696,466 - 56,699,770 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	56,646,796 - 56,650,100 (-)	NCBI		MGSCv36	mm8
Celera	9	54,073,795 - 54,077,102 (-)	NCBI		Celera
Cytogenetic Map	9	B	NCBI
cM Map	9	30.28	NCBI

Cimap1c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	66,144,726 - 66,176,985 (-)	NCBI		GRCr8
mRatBN7.2	8	57,248,746 - 57,281,084 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	57,248,746 - 57,281,004 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	62,772,135 - 62,775,189 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	61,050,979 - 61,054,033 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	58,915,413 - 58,918,467 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	61,516,249 - 61,542,946 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	61,516,268 - 61,519,507 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	60,084,944 - 60,088,207 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	60,594,619 - 60,597,662 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	60,613,681 - 60,616,726 (-)	NCBI
Celera	8	56,716,851 - 56,719,894 (-)	NCBI		Celera
Cytogenetic Map	8	q24	NCBI

Cimap1c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955450	2,614,261 - 2,617,324 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955450	2,614,377 - 2,617,064 (-)	NCBI	ChiLan1.0	ChiLan1.0

CIMAP1C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	16	64,910,802 - 64,923,090 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	15	69,074,677 - 69,085,215 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	15	54,630,808 - 54,636,066 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	15	74,225,863 - 74,229,571 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	15	74,225,859 - 74,229,571 (+)	Ensembl	panpan1.1		panPan2

Cimap1c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	116,636,484 - 116,641,485 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936471	34,484,748 - 34,489,508 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936471	34,484,748 - 34,489,508 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CIMAP1C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	57,935,610 - 57,938,958 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	57,935,284 - 57,939,020 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	62,627,381 - 62,630,939 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LOC103245306
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	26	7,673,442 - 7,684,250 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	26	7,679,908 - 7,683,237 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023667975	5,978 - 9,548 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cimap1c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624894	603,852 - 606,607 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624894	603,756 - 606,703 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CIMAP1C
97 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	reproductive system	respiratory system	adipose tissue
High
Medium										8
Low							1					1
Below cutoff	3	3	4	1	5	1	4	4	7		1	3

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038441787	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038517559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038579889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038644150	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_544784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCAFT00000028686 ⟹ ENSCAFP00000026682

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	30	38,509,464 - 38,512,732 (+)	Ensembl

RefSeq Acc Id:

XM_038441787 ⟹ XP_038297715

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	30	38,714,730 - 38,718,278 (+)	NCBI

RefSeq Acc Id:

XM_038517559 ⟹ XP_038373487

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	30	38,665,278 - 38,668,831 (+)	NCBI

RefSeq Acc Id:

XM_038579889 ⟹ XP_038435817

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	30	38,947,977 - 38,951,525 (+)	NCBI

RefSeq Acc Id:

XM_038644150 ⟹ XP_038500078

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	30	38,711,135 - 38,714,700 (+)	NCBI

RefSeq Acc Id:

XM_544784 ⟹ XP_544784

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	30	38,509,233 - 38,512,782 (+)	NCBI
Dog10K_Boxer_Tasha	30	38,438,889 - 38,442,437 (+)	NCBI

Sequence:

show sequence

TCCAAGTTCTGCGATGATGTCATCCTAGCTCTAGCCTGCTGGGTCCTGTGGCTGGCTGCACCCC
AGACGGCCTCAGCTGCTCAAGCCAGAGGCTCCACTTCCTTCCCAACCCCCATGCAGCCTCCCGA
GTGGGGGAGAGAGTGGACACAGGGCCTGGTGGGGGCATCTGGGACAGGCTTCATATAGGCCTAG
CTTCTCGCTGACCACTTGGACCCCTCCTGGGCCGCAGCCATGAAACTGCCCAAGGGGGCCAGGA
ACTCGGTGTTCTATGGGCAGCACCCGGAGGAGGAAGTTCAGGTGCCCTCGTGGCAGGAGATAAA
GCAGAGCCCGGTGATCATGGCAATGATCAGAGGTCCGGGCCCTGCCAAGTACCTCCGGCCGTCC
TGCACGGGCTACTTAGACCATGACATCTCCATGTTCCAGGAGCCGGCCTGTACTCTGCACGCCA
GGCACTCGGAGAAGCGGATCATGGACATTTGCAGCTCGGGGCCTTGCTGTTTCTTGGATCCCAA
AATAACTCGGTTTGGAATGTCCAGCTGCCCGCAAGTCCCCATGGAGGAGCGCATCTCTAACCTG
CGCCTGAGCCCCAACCCAGCCTCCTGCCATTACTACTTGGAGAAGATCCACCCGCCTGGGGAAC
GCAGGGCTCCCCAGTATGCCTTCGGCCACCGGTGCCCGTACAGAGTGCTGGACCCCAATCCAGC
CCCCAACCAGTACCAGCTGCCCCTCTTGTTGGGGCCCAGCAACCCTGTCAGCCGAGCTGCTCCT
TGCTATAGTCTTTCCTCGGAGCACAAGAGCTGGTTCTACAAGGAGAACGTGGCAGGGGGCCCTG
GGCCAGCCGCGCACTCCCGGCCCGAGCCCTCCGTCTACCAGAACCGCAGCCCCACGTACAGCAT
GGCCAAGCGATTTGCCTACCCCATGGACCGCACGCCTCGGCCCGGCCCTGGCTCCCACAACGCC
CAGCAGGTGACGGTGCACAAGCCCTGCGCCCCCGCTTTCTCCATGGGCATCAAGCACTCGCCCC
ACCTGTGCCCGCTGGTCATCGACATTCAGGACTAGGGCCCTCCCGCTGCCTGCACCCGCCCCTC
CCCGCAGAAGGTATTTTTCTATATTGAACTGAGCAGCTCGCTGAGGTCTCCCGTAGCAGAGCCG
GTGTGTCTAGTGCACAGAAGGCATCAGATAAATGTTTTCACTTATTTAATTTTTCA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038297715	(Get FASTA)	NCBI Sequence Viewer
	XP_038373487	(Get FASTA)	NCBI Sequence Viewer
	XP_038435817	(Get FASTA)	NCBI Sequence Viewer
	XP_038500078	(Get FASTA)	NCBI Sequence Viewer
	XP_544784	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00000026682.2
	ENSCAFP00030013225.1
	ENSCAFP00845029043
	ENSCAFP00845029043.1

RefSeq Acc Id:

XP_544784 ⟸ XM_544784

- UniProtKB:

A0A8C0JQE8 (UniProtKB/TrEMBL), A0A8P0SM30 (UniProtKB/TrEMBL), A0A8C0MS84 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKLPKGARNSVFYGQHPEEEVQVPSWQEIKQSPVIMAMIRGPGPAKYLRPSCTGYLDHDISMFQ
EPACTLHARHSEKRIMDICSSGPCCFLDPKITRFGMSSCPQVPMEERISNLRLSPNPASCHYYL
EKIHPPGERRAPQYAFGHRCPYRVLDPNPAPNQYQLPLLLGPSNPVSRAAPCYSLSSEHKSWFY
KENVAGGPGPAAHSRPEPSVYQNRSPTYSMAKRFAYPMDRTPRPGPGSHNAQQVTVHKPCAPAF
SMGIKHSPHLCPLVIDIQD

hide sequence

RefSeq Acc Id:

ENSCAFP00000026682 ⟸ ENSCAFT00000028686

RefSeq Acc Id:

XP_038373487 ⟸ XM_038517559

RefSeq Acc Id:

XP_038500078 ⟸ XM_038644150

RefSeq Acc Id:	XP_038297715 ⟸ XM_038441787
- UniProtKB:	A0A8I3PE60 (UniProtKB/TrEMBL), A0A8C0MS84 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038435817 ⟸ XM_038579889
- UniProtKB:	A0A8C0MS84 (UniProtKB/TrEMBL), A0A8I3PE60 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000018055	Ensembl, UniProtKB/TrEMBL
	ENSCAFG00030008242	UniProtKB/TrEMBL
	ENSCAFG00845021019	ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00000028686.4	UniProtKB/TrEMBL
	ENSCAFT00030015164.1	UniProtKB/TrEMBL
	ENSCAFT00845037085	ENTREZGENE
	ENSCAFT00845037085.1	UniProtKB/TrEMBL
InterPro	SHIPPO-rpt	UniProtKB/TrEMBL
KEGG Report	cfa:487659	UniProtKB/TrEMBL
NCBI Gene	ODF3L1	ENTREZGENE
PANTHER	OUTER DENSE FIBER PROTEIN 3-LIKE PROTEIN 1	UniProtKB/TrEMBL
	SHIPPO-1-RELATED	UniProtKB/TrEMBL
Pfam	SHIPPO-rpt	UniProtKB/TrEMBL
UniProt	A0A8C0JQE8	ENTREZGENE
	A0A8C0MS84	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I3PE60	ENTREZGENE, UniProtKB/TrEMBL
	A0A8P0SM30	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:44102	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-01	CIMAP1C	ciliary microtubule associated protein 1C	ODF3L1	outer dense fiber of sperm tails 3 like 1	Symbol and/or name change	19259463	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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