PCYOX1L (prenylcysteine oxidase 1 like)

Gene: PCYOX1L (prenylcysteine oxidase 1 like) Homo sapiens

Analyze

Symbol:

PCYOX1L

Name:

prenylcysteine oxidase 1 like

RGD ID:

1604601

HGNC Page

HGNC:28477

Description:

Predicted to enable prenylcysteine oxidase activity. Predicted to be involved in prenylated protein catabolic process. Located in membrane.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

MGC3265; prenylcysteine oxidase-like

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Allele / Splice:

See ClinVar data

Latest Assembly:

GRCh38 - Human Genome Assembly GRCh38

Position:

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	149,358,046 - 149,369,653 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	149,358,037 - 149,369,653 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	148,737,609 - 148,749,216 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	148,717,802 - 148,729,408 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	144,819,547 - 144,831,198 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	143,883,895 - 143,895,547 (+)	NCBI		HuRef
CHM1_1	5	148,170,002 - 148,181,654 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	149,892,861 - 149,904,468 (+)	NCBI		T2T-CHM13v2.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

familial adenomatous polyposis 1 (IAGP)

Hereditary Neoplastic Syndromes (IAGP)

Neurodevelopmental Disorders (IAGP)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (EXP)

1,2-dimethylhydrazine (ISO)

1-naphthyl isothiocyanate (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4,6-tribromophenol (EXP)

3,3',5,5'-tetrabromobisphenol A (EXP)

6-propyl-2-thiouracil (ISO)

acetamide (ISO)

acrolein (EXP)

acrylamide (EXP)

all-trans-retinoic acid (EXP)

alpha-phellandrene (EXP)

alpha-pinene (EXP)

alpha-Zearalanol (ISO)

amitrole (ISO)

antirheumatic drug (EXP)

aristolochic acid A (EXP)

benzo[a]pyrene (EXP)

bisphenol A (EXP,ISO)

cadmium atom (EXP)

cadmium dichloride (EXP)

carbamazepine (EXP)

cisplatin (EXP)

clobetasol (ISO)

copper atom (ISO)

copper(0) (ISO)

cyclosporin A (EXP)

decabromodiphenyl ether (EXP)

deoxynivalenol (EXP)

doxorubicin (EXP)

elemental selenium (EXP)

endosulfan (ISO)

ethanol (ISO)

fulvestrant (EXP)

gentamycin (ISO)

ivermectin (EXP)

lipopolysaccharide (ISO)

menadione (EXP)

methamphetamine (ISO)

miconazole (ISO)

ozone (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorooctanoic acid (ISO)

selenium atom (EXP)

silicon dioxide (EXP)

sunitinib (EXP)

T-2 toxin (EXP)

tamoxifen (ISO)

tert-butyl hydroperoxide (EXP)

testosterone (EXP)

thioacetamide (ISO)

titanium dioxide (ISO)

trichostatin A (EXP)

trimellitic anhydride (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (EXP)

vinclozolin (ISO)

vitamin E (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

prenylated protein catabolic process (IBA)

prenylcysteine catabolic process (IEA)

Cellular Component

extracellular region (IEA,TAS)

membrane (HDA)

platelet alpha granule lumen (TAS)

Molecular Function

oxidoreductase activity (IEA)

prenylcysteine oxidase activity (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:15340161	PMID:15489334	PMID:16303743	PMID:16344560	PMID:19946888	PMID:20237496	PMID:21873635	PMID:22268729	PMID:22658674	PMID:26186194	PMID:28514442
PMID:28611215	PMID:29509190	PMID:29568061	PMID:30097533	PMID:31932471	PMID:32409323	PMID:32513696	PMID:33961781	PMID:34079125	PMID:35241646	PMID:35271311	PMID:35446349
PMID:35696571	PMID:36215168	PMID:37179332

Genomics

Comparative Map Data

PCYOX1L
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	149,358,046 - 149,369,653 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	149,358,037 - 149,369,653 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	148,737,609 - 148,749,216 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	148,717,802 - 148,729,408 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	144,819,547 - 144,831,198 (+)	NCBI		Celera
Cytogenetic Map	5	q32	NCBI
HuRef	5	143,883,895 - 143,895,547 (+)	NCBI		HuRef
CHM1_1	5	148,170,002 - 148,181,654 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	149,892,861 - 149,904,468 (+)	NCBI		T2T-CHM13v2.0

Pcyox1l
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	61,829,907 - 61,840,712 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	61,829,908 - 61,840,706 (-)	Ensembl		GRCm39 Ensembl
GRCm38	18	61,696,164 - 61,708,114 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	61,696,837 - 61,707,635 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	61,856,491 - 61,867,289 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	61,822,206 - 61,833,004 (-)	NCBI		MGSCv36	mm8
Celera	18	62,981,373 - 62,993,208 (-)	NCBI		Celera
Cytogenetic Map	18	E1	NCBI
cM Map	18	34.68	NCBI

Pcyox1l
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	18	57,420,971 - 57,431,632 (-)	NCBI		GRCr8
mRatBN7.2	18	55,150,637 - 55,161,334 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	55,150,650 - 55,161,327 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	57,244,124 - 57,254,806 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	57,958,776 - 57,969,434 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	55,774,498 - 55,785,158 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	57,021,081 - 57,031,552 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	57,021,083 - 57,031,459 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	56,249,994 - 56,259,828 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	18	57,674,740 - 57,685,074 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	18	53,300,361 - 53,310,346 (-)	NCBI		Celera
Cytogenetic Map	18	q12.1	NCBI

Pcyox1l
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	5,052,726 - 5,059,958 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	5,052,782 - 5,059,939 (-)	NCBI	ChiLan1.0	ChiLan1.0

PCYOX1L
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	144,588,538 - 144,600,299 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	142,728,121 - 142,739,848 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	144,784,406 - 144,796,053 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	150,794,794 - 150,806,452 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	150,794,794 - 150,806,452 (+)	Ensembl	panpan1.1		panPan2

PCYOX1L
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	59,589,846 - 59,600,725 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	59,590,167 - 59,614,584 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	59,354,882 - 59,365,785 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	60,072,414 - 60,083,317 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	60,072,413 - 60,097,107 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	59,859,037 - 59,869,938 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	59,973,448 - 59,984,346 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	60,504,059 - 60,514,962 (-)	NCBI		UU_Cfam_GSD_1.0

Pcyox1l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	143,920,427 - 143,931,265 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	5,492,898 - 5,505,261 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936504	5,495,095 - 5,505,225 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCYOX1L
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	150,526,174 - 150,537,517 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	150,526,002 - 150,539,393 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	157,291,917 - 157,305,294 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCYOX1L
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	51,976,981 - 51,988,612 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	51,981,547 - 51,988,598 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	25,758,417 - 25,770,018 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pcyox1l
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	8,716,770 - 8,728,215 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	8,716,828 - 8,728,012 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in PCYOX1L
22 total Variants

Clinical Variants

Name	Type	Condition(s)	Position(s)	Clinical significance
GRCh38/hg38 5q23.3-33.2(chr5:130860928-155321811)x3	copy number gain	See cases [RCV000051193]	Chr5:130860928..155321811 [GRCh38] Chr5:130196621..154701371 [GRCh37] Chr5:130224520..154681564 [NCBI36] Chr5:5q23.3-33.2	pathogenic
GRCh38/hg38 5q21.3-33.2(chr5:106619588-156124387)x1	copy number loss	See cases [RCV000053524]	Chr5:106619588..156124387 [GRCh38] Chr5:105955289..155551397 [GRCh37] Chr5:105983188..155483975 [NCBI36] Chr5:5q21.3-33.2	pathogenic
NM_024028.3(PCYOX1L):c.994A>C (p.Thr332Pro)	single nucleotide variant	Malignant melanoma [RCV000061176]	Chr5:149368163 [GRCh38] Chr5:148747726 [GRCh37] Chr5:148727919 [NCBI36] Chr5:5q32	not provided
GRCh38/hg38 5q23.3-33.2(chr5:129847794-153353546)x3	copy number gain	See cases [RCV000138808]	Chr5:129847794..153353546 [GRCh38] Chr5:129183487..152733106 [GRCh37] Chr5:129211386..152713299 [NCBI36] Chr5:5q23.3-33.2	pathogenic
GRCh38/hg38 5q31.3-32(chr5:141089988-149530678)x3	copy number gain	See cases [RCV000139504]	Chr5:141089988..149530678 [GRCh38] Chr5:140469572..148910241 [GRCh37] Chr5:140449756..148890434 [NCBI36] Chr5:5q31.3-32	pathogenic
GRCh37/hg19 5q15-35.3(chr5:94844077-178830410)x3	copy number gain	not provided [RCV000487658]	Chr5:94844077..178830410 [GRCh37] Chr5:5q15-35.3	likely benign
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)x3	copy number gain	See cases [RCV000449349]	Chr5:130125085..157574910 [GRCh37] Chr5:5q23.3-33.3	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)	copy number gain	See cases [RCV000510723]	Chr5:113577..180719789 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5q21.3-35.3(chr5:106716357-180687338)x3	copy number gain	See cases [RCV000448245]	Chr5:106716357..180687338 [GRCh37] Chr5:5q21.3-35.3	pathogenic
GRCh37/hg19 5q31.3-32(chr5:141113273-149154835)x1	copy number loss	See cases [RCV000510497]	Chr5:141113273..149154835 [GRCh37] Chr5:5q31.3-32	pathogenic
GRCh37/hg19 5p15.1-q35.2(chr5:17628741-176575720)x1	copy number loss	See cases [RCV000511978]	Chr5:17628741..176575720 [GRCh37] Chr5:5p15.1-q35.2	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:113577-180719789)x3	copy number gain	See cases [RCV000512039]	Chr5:113577..180719789 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
NC_000005.9:g.(?_86400000)_(154000000_?)del	deletion	Familial adenomatous polyposis 1 [RCV002231249]\|Hereditary cancer-predisposing syndrome [RCV000554476]	Chr5:86400000..154000000 [GRCh37] Chr5:5q14.3-33.2	pathogenic
NM_024028.4(PCYOX1L):c.1150C>T (p.Arg384Trp)	single nucleotide variant	not specified [RCV004288729]	Chr5:149368319 [GRCh38] Chr5:148747882 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.410A>C (p.Tyr137Ser)	single nucleotide variant	not specified [RCV004298930]	Chr5:149364150 [GRCh38] Chr5:148743713 [GRCh37] Chr5:5q32	uncertain significance
GRCh37/hg19 5p15.33-q35.3(chr5:25328-180693344)x3	copy number gain	not provided [RCV000744323]	Chr5:25328..180693344 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
GRCh37/hg19 5p15.33-q35.3(chr5:13648-180905029)x3	copy number gain	not provided [RCV000744317]	Chr5:13648..180905029 [GRCh37] Chr5:5p15.33-q35.3	pathogenic
Single allele	deletion	Neurodevelopmental disorder [RCV000787436]	Chr5:14685137..149511942 [GRCh37] Chr5:5p15.2-q32	uncertain significance
GRCh37/hg19 5q31.3-32(chr5:140424333-148985999)x3	copy number gain	not provided [RCV000848228]	Chr5:140424333..148985999 [GRCh37] Chr5:5q31.3-32	uncertain significance
GRCh37/hg19 5q32(chr5:147164969-149315489)x1	copy number loss	not provided [RCV002473891]	Chr5:147164969..149315489 [GRCh37] Chr5:5q32	pathogenic
NM_024028.4(PCYOX1L):c.1453G>T (p.Asp485Tyr)	single nucleotide variant	not specified [RCV004263015]	Chr5:149368622 [GRCh38] Chr5:148748185 [GRCh37] Chr5:5q32	uncertain significance
GRCh37/hg19 5q23.3-33.3(chr5:130125085-157574910)	copy number gain	not specified [RCV002053526]	Chr5:130125085..157574910 [GRCh37] Chr5:5q23.3-33.3	pathogenic
NC_000005.9:g.(?_147774340)_(149681936_?)del	deletion	not provided [RCV003116332]	Chr5:147774340..149681936 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.1015G>A (p.Gly339Ser)	single nucleotide variant	not specified [RCV004322718]	Chr5:149368184 [GRCh38] Chr5:148747747 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.89C>T (p.Ala30Val)	single nucleotide variant	not specified [RCV004142025]	Chr5:149362637 [GRCh38] Chr5:148742200 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.17C>A (p.Pro6Gln)	single nucleotide variant	not specified [RCV004201830]	Chr5:149358085 [GRCh38] Chr5:148737648 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.20T>A (p.Leu7Gln)	single nucleotide variant	not specified [RCV004150447]	Chr5:149358088 [GRCh38] Chr5:148737651 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.1289C>T (p.Ser430Phe)	single nucleotide variant	not specified [RCV004088790]	Chr5:149368458 [GRCh38] Chr5:148748021 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.1298C>T (p.Thr433Met)	single nucleotide variant	not specified [RCV004207312]	Chr5:149368467 [GRCh38] Chr5:148748030 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.888C>G (p.Asp296Glu)	single nucleotide variant	not specified [RCV004157760]	Chr5:149368057 [GRCh38] Chr5:148747620 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.848C>T (p.Ala283Val)	single nucleotide variant	not specified [RCV004223408]	Chr5:149368017 [GRCh38] Chr5:148747580 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.11C>T (p.Ala4Val)	single nucleotide variant	not specified [RCV004332563]	Chr5:149358079 [GRCh38] Chr5:148737642 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.340G>A (p.Gly114Ser)	single nucleotide variant	not specified [RCV004259713]	Chr5:149364080 [GRCh38] Chr5:148743643 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.308G>A (p.Arg103Gln)	single nucleotide variant	not specified [RCV004254132]	Chr5:149364048 [GRCh38] Chr5:148743611 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.1292G>T (p.Arg431Leu)	single nucleotide variant	not specified [RCV004270522]	Chr5:149368461 [GRCh38] Chr5:148748024 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.28G>C (p.Ala10Pro)	single nucleotide variant	not specified [RCV004276214]	Chr5:149358096 [GRCh38] Chr5:148737659 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.746T>C (p.Val249Ala)	single nucleotide variant	not specified [RCV004251051]	Chr5:149367423 [GRCh38] Chr5:148746986 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.1340A>G (p.Asn447Ser)	single nucleotide variant	not specified [RCV004308745]	Chr5:149368509 [GRCh38] Chr5:148748072 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.538G>A (p.Glu180Lys)	single nucleotide variant	not specified [RCV004356458]	Chr5:149366009 [GRCh38] Chr5:148745572 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.1445A>T (p.Asp482Val)	single nucleotide variant	not specified [RCV004356285]	Chr5:149368614 [GRCh38] Chr5:148748177 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.700G>A (p.Gly234Arg)	single nucleotide variant	not specified [RCV004502910]	Chr5:149367377 [GRCh38] Chr5:148746940 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.640C>T (p.Arg214Trp)	single nucleotide variant	not specified [RCV004502909]	Chr5:149366111 [GRCh38] Chr5:148745674 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.331G>A (p.Ala111Thr)	single nucleotide variant	not specified [RCV004502907]	Chr5:149364071 [GRCh38] Chr5:148743634 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.84A>T (p.Lys28Asn)	single nucleotide variant	not specified [RCV004502912]	Chr5:149358152 [GRCh38] Chr5:148737715 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.1308G>T (p.Arg436Ser)	single nucleotide variant	not specified [RCV004502905]	Chr5:149368477 [GRCh38] Chr5:148748040 [GRCh37] Chr5:5q32	uncertain significance
NM_024028.4(PCYOX1L):c.49G>A (p.Ala17Thr)	single nucleotide variant	not specified [RCV004502908]	Chr5:149358117 [GRCh38] Chr5:148737680 [GRCh37] Chr5:5q32	uncertain significance

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	3443
Count of miRNA genes:	853
Interacting mature miRNAs:	1016
Transcripts:	ENST00000274569, ENST00000503240, ENST00000505669, ENST00000507621, ENST00000510990, ENST00000511945, ENST00000514349
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region

MGC3265__7706

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	148,748,513 - 148,749,252	UniSTS	GRCh37
Build 36	5	148,728,706 - 148,729,445	RGD	NCBI36
Celera	5	144,830,490 - 144,831,229	RGD
HuRef	5	143,894,839 - 143,895,578	UniSTS

D5S1632E

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	148,748,986 - 148,749,094	UniSTS	GRCh37
Build 36	5	148,729,179 - 148,729,287	RGD	NCBI36
Celera	5	144,830,963 - 144,831,071	RGD
Cytogenetic Map	5	q32	UniSTS
HuRef	5	143,895,312 - 143,895,420	UniSTS
GeneMap99-GB4 RH Map	5	575.09	UniSTS
NCBI RH Map	5	891.6	UniSTS

SGC30516

Human Assembly	Chr	Position (strand)	Source	JBrowse
GRCh37	5	148,749,070 - 148,749,206	UniSTS	GRCh37
Build 36	5	148,729,263 - 148,729,399	RGD	NCBI36
Celera	5	144,831,047 - 144,831,183	RGD
Cytogenetic Map	5	q32	UniSTS
HuRef	5	143,895,396 - 143,895,532	UniSTS
GeneMap99-GB4 RH Map	5	573.57	UniSTS
Whitehead-RH Map	5	486.1	UniSTS
NCBI RH Map	5	891.6	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system

circulatory system

endocrine system

exocrine system

hemolymphoid system

hepatobiliary system

integumental system

musculoskeletal system

nervous system

renal system

reproductive system

respiratory system

sensory system

visual system

adipose tissue

appendage

entire extraembryonic component

pharyngeal arch

High

Medium

515

409

642

879

1819

195

2339

1107

660

262

1110

Low

1923

2576

1021

545

1067

396

2462

1924

1392

367

353

953

158

942

1603

Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001301054	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001301057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_024028	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_011537682	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024446204	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_024446205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001742250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001742251	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC131025	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AF451985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK075414	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK090410	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK127281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL834220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC004166	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BP397957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH471062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CP068273	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CS051219	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DA368718	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DB573610	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENST00000274569 ⟹ ENSP00000274569

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	149,358,046 - 149,369,653 (+)	Ensembl

RefSeq Acc Id:

ENST00000503240

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	149,362,053 - 149,369,653 (+)	Ensembl

RefSeq Acc Id:

ENST00000505669 ⟹ ENSP00000427166

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	149,358,069 - 149,369,653 (+)	Ensembl

RefSeq Acc Id:

ENST00000507621

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	149,363,069 - 149,369,653 (+)	Ensembl

RefSeq Acc Id:

ENST00000510990 ⟹ ENSP00000422063

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	149,358,037 - 149,365,971 (+)	Ensembl

RefSeq Acc Id:

ENST00000511945 ⟹ ENSP00000426091

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	149,358,069 - 149,369,653 (+)	Ensembl

RefSeq Acc Id:

ENST00000514349 ⟹ ENSP00000428512

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38.p14 Ensembl	5	149,362,240 - 149,369,653 (+)	Ensembl

RefSeq Acc Id:

NM_001301054 ⟹ NP_001287983

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	149,358,046 - 149,369,653 (+)	NCBI
CHM1_1	5	148,170,002 - 148,181,654 (+)	NCBI
T2T-CHM13v2.0	5	149,892,861 - 149,904,468 (+)	NCBI

Sequence:

show sequence

GTGCTGCCCGCTCGCCGCCCGCCATGGCCCGCGCAGCCCCGCTGCTCGCCGCGTTGACCGCGCT
CCTCGCCGCCGCCGCTGCTGGCGGAGATGCCCCGCCGGGCAAAATCGGTGCGGGAAGGACGCGC
GGTGGTTGGGGCTGGGATTGGGGGCTCTGCTGTGGCCCATTTTCTCCAGCAGCACTTTGGACCT
CGGGTGCAGATCGACGTGTACGAGAAGGGAACCGTGGGTGGCCGCTTGGCCACCATCTCAGTCA
ACAAGCAGCACTATGAGAGCGGGGCTGCCTCCTTCCACTCCCTGAGCCTGCACATGCAGGACTT
CGTCAAGCTGCTGGGGCTGAGGCACCGGCGCGAGGTGGTGGGCAGGAGCGCCATCTTCGGCGGG
GAGCACTTCATGCTGGAGGAGACTGACTGGTACCTGCTGAACCTCTTCCGCCTCTGGTGGCACT
ATGGCATCAGCTTCCTGAGGCTGCAGATGTGGGTGGAGGAGGTCATGGAGAAGTTCATGAGGAT
CTATAAGTACCAGGCCCACGGCTATGCCTTCTCGGGTGTGGAGGAGCTGCTCTACTCACTGGGG
GAGTCCACCTTTGTTAACATGACCCAGCACTCTGTGGCTGAGTCCCTGCTGCAGGTGGGCGTCA
CGCAGCGCTTTATTGATGATGTCGTTTCTGCTGTCCTGCGGGCCAGCTATGGCCAGTCAGCAGC
GATGCCCGCCTTTGCAGGAGCCATGTCACTAGCCGGGGCCCAAGGCAGCCTGTGGTCTGTGGAA
GGAGGCAATAAGCTGGTTTGTTCCGGTTTGCTGAAGCTCACCAAGGCCAATGTGATCCATGCCA
CAGTGACCTCTGTGACCCTGCACAGCACAGAGGGGAAAGCCCTGTACCAGGTGGCGTATGAGAA
TGAGGTAGGCAACAGCTCTGACTTCTATGACATCGTGGTCATCGCCACCCCCCTGCACCTGGAC
AACAGCAGCAGCAACTTAACCTTTGCAGGCTTCCACCCGCCCATTGATGACGTGCAGGGCTCTT
TCCAGCCCACCGTCGTCTCCTTGGTCCACGGCTACCTCAACTCGTCCTACTTCGGTTTCCCAGA
CCCTAAGCTTTTCCCCTTTGCCAACATCCTTACCACAGATTTCCCCAGCTTCTTCTGCACTCTG
GACAACATCTGCCCTGTCAACATCTCTGCCAGCTTCCGGCGAAAGCAGCCCCAGGAGGCAGCTG
TTTGGCGAGTCCAGTCCCCCAAGCCCCTCTTTCGGACCCAGCTAAAGACCCTGTTCCGTTCCTA
TTACTCAGTGCAGACAGCTGAGTGGCAGGCCCATCCCCTCTATGGCTCCCGCCCCACGCTCCCG
AGGTTTGCACTCCATGACCAGCTCTTCTACCTCAATGCCCTGGAGTGGGCGGCCAGCTCCGTGG
AGGTGATGGCCGTGGCTGCCAAGAATGTGGCCTTGCTGGCTTACAACCGCTGGTACCAGGACCT
AGACAAGATTGATCAAAAAGATTTGATGCACAAGGTCAAGACTGAACTGTGAGGGCTCTAGGGA
GAGCCTGGGAACTTTCATCCCCCACTGAAGATGGATCATCCCACAGCAGCCCAGGACTGAATAA
GCCATGCTCGCCCACCAGGCTTCTTTCTGACCCCTCATGTATCAAGCATCTCCAGGTGACCTAC
TGTCTGCCTATATTAAGGGTCCACACGGCGGCTGCTGCTTTTTTTTAAGGGGGAAAGTAAGAAA
AGAGAAGGAAATCCAAGCCAGTATATTTGTTTTATTTATTTTTTTTAAGAAGAAAAAAGTTCAT
CTTCACAAGGTGCTTCAGACTTGGTTTCTTAGCTAGAAACCAGAAGACTACGGGAGGGAATATA
AGGCAGAGAACTATGAGTCTTATTTTATTACTGTTTTTCACTACCTACTCCCACAATGGACAAT
CAATTGAGGCAACCTACAAGAAAACATTTACAACCAGATGGTTACAAATAAAGTAGAAGGGAAG
ATCAGAAAACCTAAGAAATGATCATAGCTCCTGGTTACTGTGGACTTGATGGATTTGAAGTACC
TAGTTCAGAACTCCCTAGTCACCATCTCCAAGCCTGTCAACATCACTGCATATTGGAGGAGATG
ACTGTGGTAGGACCCAAGGAAGAGATGTGTGCCTGAATAGTCGTCACCATATCTCCAAGCTTCC
TGGCAACCAGTGGGAAAAGAAACATGCGAGGCTGTAGGAAGAGGGAAGCTCTTCCTTGGCACCT
AGAGGAATTAGCCATTCTCTTCCTTATGCAAAGATTGAGGAATGCAACAATATAAAGAAGAGAA
GTCCCCAGATGGTAGAGAGCAGTCATATCTTACCCCTAGATGTTCATCCCAGCAGAAGAAAGAA
GAAGGTGTTGGGGTAGGATTCTTCAGAGGTTAGCCTGGTACTTTCTCATCAGACACTAGCTTGA
AGTAAGAGGAGAATTATGCTTTTCTTTGCTTTTTCTACAAACCCTTAAAAATCACTTGTTTTAA
AAAGAAAGTAAAAGCCCTTTTCATTCC

hide sequence

RefSeq Acc Id:

NM_001301057 ⟹ NP_001287986

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	149,358,046 - 149,369,653 (+)	NCBI
CHM1_1	5	148,170,002 - 148,181,654 (+)	NCBI
T2T-CHM13v2.0	5	149,892,861 - 149,904,468 (+)	NCBI

Sequence:

show sequence

GTGCTGCCCGCTCGCCGCCCGCCATGGCCCGCGCAGCCCCGCTGCTCGCCGCGTTGACCGCGCT
CCTCGCCGCCGCCGCTGCTGGCGGAGATGCCCCGCCGGGCAAAATCGGTGCGGGAAGGACGCGC
GGTGGTTGGGGCTGGGATTGGGGGCTCTGCTGTGGCCCATTTTCTCCAGCAGCACTTTGGACCT
CGGGTGCAGATCGACGTGTACGAGAAGGGAACCGTGGGTGGCCGCTTGGCCACCATCTCAGTCA
ACAAGCAGCACTATGAGAGCGGGGCTGCCTCCTTCCACTCCCTGAGCCTGCACATGCAGGACTT
CGTCAAGCTGCTGGGGCTGAGGCACCGGCGCGAGGTGGTGGGCAGGAGCGCCATCTTCGGCGGG
GAGCACTTCATGCTGGAGGAGACTGACTGGTACCTGCTGAACCTCTTCCGCCTCTGGTGGCACT
ATGGCATCAGCTTCCTGAGGCTGCAGATGTGGGTGGAGGAGGTCATGGAGAAGTTCATGAGCTA
TGGCCAGTCAGCAGCGATGCCCGCCTTTGCAGGAGCCATGTCACTAGCCGGGGCCCAAGGCAGC
CTGTGGTCTGTGGAAGGAGGCAATAAGCTGGTTTGTTCCGGTTTGCTGAAGCTCACCAAGGCCA
ATGTGATCCATGCCACAGTGACCTCTGTGACCCTGCACAGCACAGAGGGGAAAGCCCTGTACCA
GGTGGCGTATGAGAATGAGGTAGGCAACAGCTCTGACTTCTATGACATCGTGGTCATCGCCACC
CCCCTGCACCTGGACAACAGCAGCAGCAACTTAACCTTTGCAGGCTTCCACCCGCCCATTGATG
ACGTGCAGGGCTCTTTCCAGCCCACCGTCGTCTCCTTGGTCCACGGCTACCTCAACTCGTCCTA
CTTCGGTTTCCCAGACCCTAAGCTTTTCCCCTTTGCCAACATCCTTACCACAGATTTCCCCAGC
TTCTTCTGCACTCTGGACAACATCTGCCCTGTCAACATCTCTGCCAGCTTCCGGCGAAAGCAGC
CCCAGGAGGCAGCTGTTTGGCGAGTCCAGTCCCCCAAGCCCCTCTTTCGGACCCAGCTAAAGAC
CCTGTTCCGTTCCTATTACTCAGTGCAGACAGCTGAGTGGCAGGCCCATCCCCTCTATGGCTCC
CGCCCCACGCTCCCGAGGTTTGCACTCCATGACCAGCTCTTCTACCTCAATGCCCTGGAGTGGG
CGGCCAGCTCCGTGGAGGTGATGGCCGTGGCTGCCAAGAATGTGGCCTTGCTGGCTTACAACCG
CTGGTACCAGGACCTAGACAAGATTGATCAAAAAGATTTGATGCACAAGGTCAAGACTGAACTG
TGAGGGCTCTAGGGAGAGCCTGGGAACTTTCATCCCCCACTGAAGATGGATCATCCCACAGCAG
CCCAGGACTGAATAAGCCATGCTCGCCCACCAGGCTTCTTTCTGACCCCTCATGTATCAAGCAT
CTCCAGGTGACCTACTGTCTGCCTATATTAAGGGTCCACACGGCGGCTGCTGCTTTTTTTTAAG
GGGGAAAGTAAGAAAAGAGAAGGAAATCCAAGCCAGTATATTTGTTTTATTTATTTTTTTTAAG
AAGAAAAAAGTTCATCTTCACAAGGTGCTTCAGACTTGGTTTCTTAGCTAGAAACCAGAAGACT
ACGGGAGGGAATATAAGGCAGAGAACTATGAGTCTTATTTTATTACTGTTTTTCACTACCTACT
CCCACAATGGACAATCAATTGAGGCAACCTACAAGAAAACATTTACAACCAGATGGTTACAAAT
AAAGTAGAAGGGAAGATCAGAAAACCTAAGAAATGATCATAGCTCCTGGTTACTGTGGACTTGA
TGGATTTGAAGTACCTAGTTCAGAACTCCCTAGTCACCATCTCCAAGCCTGTCAACATCACTGC
ATATTGGAGGAGATGACTGTGGTAGGACCCAAGGAAGAGATGTGTGCCTGAATAGTCGTCACCA
TATCTCCAAGCTTCCTGGCAACCAGTGGGAAAAGAAACATGCGAGGCTGTAGGAAGAGGGAAGC
TCTTCCTTGGCACCTAGAGGAATTAGCCATTCTCTTCCTTATGCAAAGATTGAGGAATGCAACA
ATATAAAGAAGAGAAGTCCCCAGATGGTAGAGAGCAGTCATATCTTACCCCTAGATGTTCATCC
CAGCAGAAGAAAGAAGAAGGTGTTGGGGTAGGATTCTTCAGAGGTTAGCCTGGTACTTTCTCAT
CAGACACTAGCTTGAAGTAAGAGGAGAATTATGCTTTTCTTTGCTTTTTCTACAAACCCTTAAA
AATCACTTGTTTTAAAAAGAAAGTAAAAGCCCTTTTCATTCC

hide sequence

RefSeq Acc Id:

NM_024028 ⟹ NP_076933

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	149,358,046 - 149,369,653 (+)	NCBI
GRCh37	5	148,737,570 - 148,749,221 (+)	RGD
Build 36	5	148,717,802 - 148,729,408 (+)	NCBI Archive
Celera	5	144,819,547 - 144,831,198 (+)	RGD
HuRef	5	143,883,895 - 143,895,547 (+)	ENTREZGENE
CHM1_1	5	148,170,002 - 148,181,654 (+)	NCBI
T2T-CHM13v2.0	5	149,892,861 - 149,904,468 (+)	NCBI

Sequence:

show sequence

GTGCTGCCCGCTCGCCGCCCGCCATGGCCCGCGCAGCCCCGCTGCTCGCCGCGTTGACCGCGCT
CCTCGCCGCCGCCGCTGCTGGCGGAGATGCCCCGCCGGGCAAAATCGCGGTGGTTGGGGCTGGG
ATTGGGGGCTCTGCTGTGGCCCATTTTCTCCAGCAGCACTTTGGACCTCGGGTGCAGATCGACG
TGTACGAGAAGGGAACCGTGGGTGGCCGCTTGGCCACCATCTCAGTCAACAAGCAGCACTATGA
GAGCGGGGCTGCCTCCTTCCACTCCCTGAGCCTGCACATGCAGGACTTCGTCAAGCTGCTGGGG
CTGAGGCACCGGCGCGAGGTGGTGGGCAGGAGCGCCATCTTCGGCGGGGAGCACTTCATGCTGG
AGGAGACTGACTGGTACCTGCTGAACCTCTTCCGCCTCTGGTGGCACTATGGCATCAGCTTCCT
GAGGCTGCAGATGTGGGTGGAGGAGGTCATGGAGAAGTTCATGAGGATCTATAAGTACCAGGCC
CACGGCTATGCCTTCTCGGGTGTGGAGGAGCTGCTCTACTCACTGGGGGAGTCCACCTTTGTTA
ACATGACCCAGCACTCTGTGGCTGAGTCCCTGCTGCAGGTGGGCGTCACGCAGCGCTTTATTGA
TGATGTCGTTTCTGCTGTCCTGCGGGCCAGCTATGGCCAGTCAGCAGCGATGCCCGCCTTTGCA
GGAGCCATGTCACTAGCCGGGGCCCAAGGCAGCCTGTGGTCTGTGGAAGGAGGCAATAAGCTGG
TTTGTTCCGGTTTGCTGAAGCTCACCAAGGCCAATGTGATCCATGCCACAGTGACCTCTGTGAC
CCTGCACAGCACAGAGGGGAAAGCCCTGTACCAGGTGGCGTATGAGAATGAGGTAGGCAACAGC
TCTGACTTCTATGACATCGTGGTCATCGCCACCCCCCTGCACCTGGACAACAGCAGCAGCAACT
TAACCTTTGCAGGCTTCCACCCGCCCATTGATGACGTGCAGGGCTCTTTCCAGCCCACCGTCGT
CTCCTTGGTCCACGGCTACCTCAACTCGTCCTACTTCGGTTTCCCAGACCCTAAGCTTTTCCCC
TTTGCCAACATCCTTACCACAGATTTCCCCAGCTTCTTCTGCACTCTGGACAACATCTGCCCTG
TCAACATCTCTGCCAGCTTCCGGCGAAAGCAGCCCCAGGAGGCAGCTGTTTGGCGAGTCCAGTC
CCCCAAGCCCCTCTTTCGGACCCAGCTAAAGACCCTGTTCCGTTCCTATTACTCAGTGCAGACA
GCTGAGTGGCAGGCCCATCCCCTCTATGGCTCCCGCCCCACGCTCCCGAGGTTTGCACTCCATG
ACCAGCTCTTCTACCTCAATGCCCTGGAGTGGGCGGCCAGCTCCGTGGAGGTGATGGCCGTGGC
TGCCAAGAATGTGGCCTTGCTGGCTTACAACCGCTGGTACCAGGACCTAGACAAGATTGATCAA
AAAGATTTGATGCACAAGGTCAAGACTGAACTGTGAGGGCTCTAGGGAGAGCCTGGGAACTTTC
ATCCCCCACTGAAGATGGATCATCCCACAGCAGCCCAGGACTGAATAAGCCATGCTCGCCCACC
AGGCTTCTTTCTGACCCCTCATGTATCAAGCATCTCCAGGTGACCTACTGTCTGCCTATATTAA
GGGTCCACACGGCGGCTGCTGCTTTTTTTTAAGGGGGAAAGTAAGAAAAGAGAAGGAAATCCAA
GCCAGTATATTTGTTTTATTTATTTTTTTTAAGAAGAAAAAAGTTCATCTTCACAAGGTGCTTC
AGACTTGGTTTCTTAGCTAGAAACCAGAAGACTACGGGAGGGAATATAAGGCAGAGAACTATGA
GTCTTATTTTATTACTGTTTTTCACTACCTACTCCCACAATGGACAATCAATTGAGGCAACCTA
CAAGAAAACATTTACAACCAGATGGTTACAAATAAAGTAGAAGGGAAGATCAGAAAACCTAAGA
AATGATCATAGCTCCTGGTTACTGTGGACTTGATGGATTTGAAGTACCTAGTTCAGAACTCCCT
AGTCACCATCTCCAAGCCTGTCAACATCACTGCATATTGGAGGAGATGACTGTGGTAGGACCCA
AGGAAGAGATGTGTGCCTGAATAGTCGTCACCATATCTCCAAGCTTCCTGGCAACCAGTGGGAA
AAGAAACATGCGAGGCTGTAGGAAGAGGGAAGCTCTTCCTTGGCACCTAGAGGAATTAGCCATT
CTCTTCCTTATGCAAAGATTGAGGAATGCAACAATATAAAGAAGAGAAGTCCCCAGATGGTAGA
GAGCAGTCATATCTTACCCCTAGATGTTCATCCCAGCAGAAGAAAGAAGAAGGTGTTGGGGTAG
GATTCTTCAGAGGTTAGCCTGGTACTTTCTCATCAGACACTAGCTTGAAGTAAGAGGAGAATTA
TGCTTTTCTTTGCTTTTTCTACAAACCCTTAAAAATCACTTGTTTTAAAAAGAAAGTAAAAGCC
CTTTTCATTCC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001287983	(Get FASTA)	NCBI Sequence Viewer
	NP_001287986	(Get FASTA)	NCBI Sequence Viewer
	NP_076933	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH00014	(Get FASTA)	NCBI Sequence Viewer
	AAH04166	(Get FASTA)	NCBI Sequence Viewer
	AAP97684	(Get FASTA)	NCBI Sequence Viewer
	BAC03391	(Get FASTA)	NCBI Sequence Viewer
	BAC11604	(Get FASTA)	NCBI Sequence Viewer
	BAG54471	(Get FASTA)	NCBI Sequence Viewer
	CAD38901	(Get FASTA)	NCBI Sequence Viewer
	CAI72105	(Get FASTA)	NCBI Sequence Viewer
	EAW61783	(Get FASTA)	NCBI Sequence Viewer
	EAW61784	(Get FASTA)	NCBI Sequence Viewer
	EAW61785	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSP00000274569
	ENSP00000274569.4
	ENSP00000422063.2
	ENSP00000426091.1
	ENSP00000427166.1
	ENSP00000428512
	ENSP00000428512.1
GenBank Protein	Q8NBM8	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_076933 ⟸ NM_024028
- Peptide Label:	isoform 1 precursor
- UniProtKB:	Q9BTE8 (UniProtKB/Swiss-Prot), Q8NF69 (UniProtKB/Swiss-Prot), Q8NCY5 (UniProtKB/Swiss-Prot), Q7Z4S2 (UniProtKB/Swiss-Prot), Q9BWS3 (UniProtKB/Swiss-Prot), Q8NBM8 (UniProtKB/Swiss-Prot), E7EVZ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARAAPLLAALTALLAAAAAGGDAPPGKIAVVGAGIGGSAVAHFLQQHFGPRVQIDVYEKGTVG GRLATISVNKQHYESGAASFHSLSLHMQDFVKLLGLRHRREVVGRSAIFGGEHFMLEETDWYLL NLFRLWWHYGISFLRLQMWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGESTFVNMTQHSVA ESLLQVGVTQRFIDDVVSAVLRASYGQSAAMPAFAGAMSLAGAQGSLWSVEGGNKLVCSGLLKL TKANVIHATVTSVTLHSTEGKALYQVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAGFHP PIDDVQGSFQPTVVSLVHGYLNSSYFGFPDPKLFPFANILTTDFPSFFCTLDNICPVNISASFR RKQPQEAAVWRVQSPKPLFRTQLKTLFRSYYSVQTAEWQAHPLYGSRPTLPRFALHDQLFYLNA LEWAASSVEVMAVAAKNVALLAYNRWYQDLDKIDQKDLMHKVKTEL hide sequence

RefSeq Acc Id:	NP_001287983 ⟸ NM_001301054
- Peptide Label:	isoform 2
- UniProtKB:	E7EVZ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRRAKSVREGRAVVGAGIGGSAVAHFLQQHFGPRVQIDVYEKGTVGGRLATISVNKQHYESGA ASFHSLSLHMQDFVKLLGLRHRREVVGRSAIFGGEHFMLEETDWYLLNLFRLWWHYGISFLRLQ MWVEEVMEKFMRIYKYQAHGYAFSGVEELLYSLGESTFVNMTQHSVAESLLQVGVTQRFIDDVV SAVLRASYGQSAAMPAFAGAMSLAGAQGSLWSVEGGNKLVCSGLLKLTKANVIHATVTSVTLHS TEGKALYQVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAGFHPPIDDVQGSFQPTVVSLV HGYLNSSYFGFPDPKLFPFANILTTDFPSFFCTLDNICPVNISASFRRKQPQEAAVWRVQSPKP LFRTQLKTLFRSYYSVQTAEWQAHPLYGSRPTLPRFALHDQLFYLNALEWAASSVEVMAVAAKN VALLAYNRWYQDLDKIDQKDLMHKVKTEL hide sequence

RefSeq Acc Id:	NP_001287986 ⟸ NM_001301057
- Peptide Label:	isoform 3
- UniProtKB:	E7EVZ5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPRRAKSVREGRAVVGAGIGGSAVAHFLQQHFGPRVQIDVYEKGTVGGRLATISVNKQHYESGA ASFHSLSLHMQDFVKLLGLRHRREVVGRSAIFGGEHFMLEETDWYLLNLFRLWWHYGISFLRLQ MWVEEVMEKFMSYGQSAAMPAFAGAMSLAGAQGSLWSVEGGNKLVCSGLLKLTKANVIHATVTS VTLHSTEGKALYQVAYENEVGNSSDFYDIVVIATPLHLDNSSSNLTFAGFHPPIDDVQGSFQPT VVSLVHGYLNSSYFGFPDPKLFPFANILTTDFPSFFCTLDNICPVNISASFRRKQPQEAAVWRV QSPKPLFRTQLKTLFRSYYSVQTAEWQAHPLYGSRPTLPRFALHDQLFYLNALEWAASSVEVMA VAAKNVALLAYNRWYQDLDKIDQKDLMHKVKTEL hide sequence

RefSeq Acc Id:

ENSP00000427166 ⟸ ENST00000505669

RefSeq Acc Id:

ENSP00000274569 ⟸ ENST00000274569

RefSeq Acc Id:

ENSP00000422063 ⟸ ENST00000510990

RefSeq Acc Id:

ENSP00000426091 ⟸ ENST00000511945

RefSeq Acc Id:

ENSP00000428512 ⟸ ENST00000514349

Protein Domains

Prenylcysteine lyase

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8NBM8-F1-model_v2	AlphaFold	Q8NBM8	1-494	view protein structure

Promoters

RGD ID:

6803444

Promoter ID:

HG_KWN:51484

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

CD4+TCell, CD4+TCell_12Hour, CD4+TCell_2Hour, HeLa_S3, K562, Lymphoblastoid, NB4

Transcripts:

NM_024028, UC003LQL.1, UC010JGZ.1

Position:

Human Assembly	Chr	Position (strand)	Source
Build 36	5	148,717,346 - 148,718,197 (+)	MPROMDB

RGD ID:

6871210

Promoter ID:

EPDNEW_H8770

Type:

initiation region

Name:

PCYOX1L_1

Description:

prenylcysteine oxidase 1 like

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Human Assembly	Chr	Position (strand)	Source
GRCh38	5	149,358,046 - 149,358,106	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	HGNC:28477	AgrOrtholog
COSMIC	PCYOX1L	COSMIC
Ensembl Genes	ENSG00000145882	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENST00000274569	ENTREZGENE
	ENST00000274569.9	UniProtKB/Swiss-Prot
	ENST00000505669.5	UniProtKB/Swiss-Prot
	ENST00000510990.6	UniProtKB/TrEMBL
	ENST00000511945.5	UniProtKB/Swiss-Prot
	ENST00000514349	ENTREZGENE
	ENST00000514349.1	UniProtKB/TrEMBL
Gene3D-CATH	3.50.50.60	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.90.660.10	UniProtKB/TrEMBL
GTEx	ENSG00000145882	GTEx
HGNC ID	HGNC:28477	ENTREZGENE
Human Proteome Map	PCYOX1L	Human Proteome Map
InterPro	FAD/NAD-bd_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prenylcys_lyase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prenylcysteine_Oxase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	hsa:78991	UniProtKB/Swiss-Prot
NCBI Gene	78991	ENTREZGENE
PANTHER	PRENYLCYSTEINE OXIDASE-LIKE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR15944	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	NAD_binding_8	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Prenylcys_lyase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB	PA147357517	PharmGKB
PIRSF	Prenylcysteine_oxidase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF51905	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	D6R9J0_HUMAN	UniProtKB/TrEMBL
	E7EVZ5	ENTREZGENE, UniProtKB/TrEMBL
	PCYXL_HUMAN	UniProtKB/Swiss-Prot
	Q7Z4S2	ENTREZGENE
	Q8NBM8	ENTREZGENE
	Q8NCY5	ENTREZGENE
	Q8NF69	ENTREZGENE
	Q9BTE8	ENTREZGENE
	Q9BWS3	ENTREZGENE
UniProt Secondary	Q7Z4S2	UniProtKB/Swiss-Prot
	Q8NCY5	UniProtKB/Swiss-Prot
	Q8NF69	UniProtKB/Swiss-Prot
	Q9BTE8	UniProtKB/Swiss-Prot
	Q9BWS3	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar