Zc3h6 (zinc finger CCCH type containing 6) - Rat Genome Database

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Gene: Zc3h6 (zinc finger CCCH type containing 6) Rattus norvegicus
Analyze
Symbol: Zc3h6
Name: zinc finger CCCH type containing 6
RGD ID: 1311061
Description: Predicted to enable RNA binding activity and metal ion binding activity. Predicted to be involved in negative regulation of DNA-templated transcription. Predicted to be active in nucleus. Orthologous to human ZC3H6 (zinc finger CCCH-type containing 6); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC311415; Zc3hdc6; zinc finger CCCH domain-containing protein 6; zinc finger CCCH type domain containing 6
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83136,656,116 - 136,717,560 (+)NCBIGRCr8
mRatBN7.23116,203,466 - 116,254,186 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3116,204,197 - 116,253,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3120,101,061 - 120,150,173 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03128,696,635 - 128,745,747 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03126,357,125 - 126,406,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03121,497,709 - 121,554,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,499,195 - 121,551,433 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,127,650 - 129,127,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.03128,460,344 - 128,514,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3115,030,342 - 115,079,289 (+)NCBICelera
Cytogenetic Map3q36NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,4-methylenedioxymethamphetamine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
amitrole  (EXP)
amphetamine  (EXP)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
carbon nanotube  (ISO)
CGP 52608  (ISO)
chlorpyrifos  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
dimethylarsinic acid  (ISO)
dinophysistoxin 1  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
ethyl methanesulfonate  (ISO)
flutamide  (EXP)
FR900359  (ISO)
furan  (EXP)
gentamycin  (EXP)
lead(0)  (ISO)
leflunomide  (ISO)
methamphetamine  (EXP)
methimazole  (EXP)
methyl methanesulfonate  (ISO)
methylarsonic acid  (ISO)
methylmercury chloride  (ISO)
nickel atom  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
pentanal  (ISO)
phenethyl isothiocyanate  (ISO)
phenylmercury acetate  (ISO)
potassium dichromate  (ISO)
quercetin  (EXP,ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenate  (ISO)
sodium arsenite  (ISO)
Soman  (EXP)
sotorasib  (ISO)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetraphene  (ISO)
thioacetamide  (EXP)
titanium dioxide  (ISO)
trametinib  (ISO)
trichloroethene  (EXP)
triphenyl phosphate  (EXP)
trovafloxacin  (ISO)
valproic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Zc3h6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83136,656,116 - 136,717,560 (+)NCBIGRCr8
mRatBN7.23116,203,466 - 116,254,186 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3116,204,197 - 116,253,282 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3120,101,061 - 120,150,173 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03128,696,635 - 128,745,747 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03126,357,125 - 126,406,227 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03121,497,709 - 121,554,131 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3121,499,195 - 121,551,433 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03129,127,650 - 129,127,947 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.03128,460,344 - 128,514,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera3115,030,342 - 115,079,289 (+)NCBICelera
Cytogenetic Map3q36NCBI
ZC3H6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382112,275,597 - 112,340,059 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2112,275,597 - 112,340,059 (+)EnsemblGRCh38hg38GRCh38
GRCh372113,033,174 - 113,097,636 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362112,749,649 - 112,814,111 (+)NCBINCBI36Build 36hg18NCBI36
Build 342112,783,893 - 112,808,055NCBI
Celera2105,948,735 - 105,989,201 (-)NCBICelera
Cytogenetic Map2q14.1NCBI
HuRef2105,545,486 - 105,610,731 (+)NCBIHuRef
CHM1_12113,037,319 - 113,101,748 (+)NCBICHM1_1
T2T-CHM13v2.02112,702,473 - 112,766,918 (+)NCBIT2T-CHM13v2.0
Zc3h6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392128,809,285 - 128,860,483 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2128,809,322 - 128,860,483 (+)EnsemblGRCm39 Ensembl
GRCm382128,967,402 - 129,018,563 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2128,967,402 - 129,018,563 (+)EnsemblGRCm38mm10GRCm38
MGSCv372128,793,138 - 128,844,299 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362128,693,620 - 128,710,004 (+)NCBIMGSCv36mm8
Celera2130,195,282 - 130,246,471 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map262.63NCBI
Zc3h6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554701,825,276 - 1,843,775 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554701,823,469 - 1,876,788 (-)NCBIChiLan1.0ChiLan1.0
ZC3H6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21215,730,823 - 15,798,890 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A15,733,587 - 15,801,524 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A89,670,224 - 89,730,253 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A113,426,672 - 113,467,613 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A113,431,920 - 113,464,603 (+)Ensemblpanpan1.1panPan2
ZC3H6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11736,620,959 - 36,688,438 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1736,621,059 - 36,687,197 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1736,389,997 - 36,457,459 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01737,395,592 - 37,463,350 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1737,395,518 - 37,463,294 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11736,554,659 - 36,601,940 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01736,588,310 - 36,655,756 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01736,801,709 - 36,869,587 (+)NCBIUU_Cfam_GSD_1.0
Zc3h6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629281,992,856 - 82,043,868 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936783903,335 - 936,193 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936783868,147 - 937,180 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl344,085,397 - 44,148,494 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1344,081,283 - 44,148,913 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2345,680,786 - 45,742,641 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ZC3H6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11415,346,979 - 15,404,781 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1415,374,018 - 15,403,012 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660804,279,307 - 4,337,620 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc3h6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474933,939 - 105,983 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474932,910 - 105,889 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zc3h6
249 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:205
Count of miRNA genes:141
Interacting mature miRNAs:171
Transcripts:ENSRNOT00000024322
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)314489145121056321Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)329463235118376539Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)331172320163586636Rat
1358362Srcrt2Stress Responsive Cort QTL 22.78blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)338192233133483320Rat
2301970Bw81Body weight QTL 815.19body mass (VT:0001259)body weight (CMO:0000012)341874578155617519Rat
2301971Cm71Cardiac mass QTL 714.63heart left ventricle mass (VT:0007031)heart left ventricle weight (CMO:0000776)341874578155617519Rat
1581503Cm58Cardiac mass QTL 582.70.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)343827364121056321Rat
1559282Emca5Estrogen-induced mammary cancer QTL 53.9mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)343827364169034231Rat
2292591Esta4Estrogen-induced thymic atrophy QTL 4thymus mass (VT:0004954)thymus wet weight (CMO:0000855)347233211147415807Rat
631665Bw8Body weight QTL 85.5body mass (VT:0001259)body weight (CMO:0000012)350437042119183768Rat
1581568Rf53Renal function QTL 53urine total protein amount (VT:0000032)urine protein excretion rate to body weight ratio (CMO:0001099)356395968161299569Rat
8662816Vetf4Vascular elastic tissue fragility QTL 44renal artery integrity trait (VT:0010642)number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)359242096157323038Rat
1300111Rf12Renal function QTL 123.78renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)361017749121056321Rat
12879848Bw181Body weght QTL 1810.015body mass (VT:0001259)body weight (CMO:0000012)370348525121056321Rat
2301414Kidm37Kidney mass QTL 370.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)370653097121056321Rat
1600376Arunc5Aerobic running capacity QTL 50.21exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)373376539118376539Rat
1581546Pur13Proteinuria QTL 132.930.0335urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)378196190146592722Rat
631649Bp123Blood pressure QTL 1233.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)389772419134772419Rat
8694437Bw167Body weight QTL 16722.460.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)391797474136797474Rat
631841Niddm39Non-insulin dependent diabetes mellitus QTL 393.36blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)394856903159898684Rat
724532Cm17Cardiac mass QTL 172heart mass (VT:0007028)calculated heart weight (CMO:0000073)395735366140735366Rat
1354611Despr2Despair related QTL 23.030.0028locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)397084464142084464Rat
2293087Iddm27Insulin dependent diabetes mellitus QTL 272.68blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)397551417147415807Rat
2312659Slep7Serum leptin concentration QTL 70.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)398535255168026850Rat
2312670Bw94Body weight QTL 940.01inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)398535255168026850Rat
2312673Scl63Serum cholesterol level QTL 630.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)398535255168026850Rat
2302373Gluco39Glucose level QTL 395.01blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)398535386161695835Rat
619618Rf3Renal disease susceptibility QTL 36.50.001urine albumin amount (VT:0002871)urine albumin excretion rate to body weight ratio (CMO:0001270)3107693393152693393Rat
1331758Bp207Blood pressure QTL 2072.848arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)3112287552135181505Rat
1578754Stresp16Stress response QTL 1640.001blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)3112681431157681431Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum insulin level (CMO:0000358)3115638168135181505Rat
1358204Insglur1Insulin/glucose ratio QTL 13.8blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)3115638168135181505Rat


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 20 14 1
Low 3 43 55 39 19 39 8 11 54 35 27 10 8
Below cutoff 2 2 2

Sequence


RefSeq Acc Id: ENSRNOT00000024322   ⟹   ENSRNOP00000024322
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3116,204,197 - 116,253,282 (+)Ensembl
Rnor_6.0 Ensembl3121,499,195 - 121,551,433 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108152   ⟹   ENSRNOP00000085850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl3116,204,197 - 116,228,226 (+)Ensembl
RefSeq Acc Id: NM_001107772   ⟹   NP_001101242
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83136,657,414 - 136,706,504 (+)NCBI
mRatBN7.23116,204,197 - 116,253,282 (+)NCBI
Rnor_6.03121,499,195 - 121,551,433 (+)NCBI
Rnor_5.03129,127,650 - 129,127,947 (+)NCBI
RGSC_v3.43116,575,644 - 116,625,370 (+)RGD
Celera3115,030,342 - 115,079,289 (+)RGD
Sequence:
RefSeq Acc Id: XM_008762235   ⟹   XP_008760457
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83136,656,116 - 136,717,560 (+)NCBI
mRatBN7.23116,216,571 - 116,254,186 (+)NCBI
Rnor_6.03121,514,285 - 121,554,131 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063283756   ⟹   XP_063139826
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83136,656,117 - 136,717,560 (+)NCBI
RefSeq Acc Id: XM_063283758   ⟹   XP_063139828
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83136,656,117 - 136,717,560 (+)NCBI
RefSeq Acc Id: XM_063283759   ⟹   XP_063139829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83136,656,117 - 136,717,560 (+)NCBI
RefSeq Acc Id: XM_063283760   ⟹   XP_063139830
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83136,656,117 - 136,717,560 (+)NCBI
RefSeq Acc Id: XM_063283761   ⟹   XP_063139831
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr83136,656,117 - 136,717,560 (+)NCBI
RefSeq Acc Id: NP_001101242   ⟸   NM_001107772
- UniProtKB: F1LTU5 (UniProtKB/TrEMBL),   A6HQ43 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_008760457   ⟸   XM_008762235
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: ENSRNOP00000024322   ⟸   ENSRNOT00000024322
RefSeq Acc Id: ENSRNOP00000085850   ⟸   ENSRNOT00000108152
RefSeq Acc Id: XP_063139828   ⟸   XM_063283758
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139826   ⟸   XM_063283756
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139829   ⟸   XM_063283759
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139830   ⟸   XM_063283760
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063139831   ⟸   XM_063283761
- Peptide Label: isoform X3
Protein Domains
C3H1-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LTU5-F1-model_v2 AlphaFold F1LTU5 1-1180 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692417
Promoter ID:EPDNEW_R2942
Type:initiation region
Name:Zc3h6_1
Description:zinc finger CCCH type containing 6
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03121,499,180 - 121,499,240EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1311061 AgrOrtholog
BioCyc Gene G2FUF-47929 BioCyc
Ensembl Genes ENSRNOG00000026277 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000024322 ENTREZGENE
  ENSRNOT00000024322.6 UniProtKB/TrEMBL
  ENSRNOT00000108152.1 UniProtKB/TrEMBL
Gene3D-CATH Pneumovirus matrix protein 2 (M2), zinc-binding domain UniProtKB/TrEMBL
  Zinc finger, CCCH-type UniProtKB/TrEMBL
InterPro Su(sable)-like UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
KEGG Report rno:311415 UniProtKB/TrEMBL
NCBI Gene 311415 ENTREZGENE
PANTHER PTHR13119 UniProtKB/TrEMBL
  ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 6 UniProtKB/TrEMBL
Pfam zf-CCCH UniProtKB/TrEMBL
  zf-CCCH_2 UniProtKB/TrEMBL
PhenoGen Zc3h6 PhenoGen
PROSITE ZF_C3H1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000026277 RatGTEx
SMART ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF90229 UniProtKB/TrEMBL
UniProt A0A8I6A4Y5_RAT UniProtKB/TrEMBL
  A6HQ43 ENTREZGENE, UniProtKB/TrEMBL
  F1LTU5 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-04-30 Zc3h6  zinc finger CCCH type containing 6   Zc3h6_predicted  zinc finger CCCH type containing 6 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-30 Zc3h6_predicted  zinc finger CCCH type containing 6 (predicted)  Zc3hdc6_predicted  zinc finger CCCH type domain containing 6 (predicted)  Symbol and Name updated 1299863 APPROVED
2005-01-12 Zc3hdc6_predicted  zinc finger CCCH type domain containing 6 (predicted)      Symbol and Name status set to approved 70820 APPROVED