Ppp1r9a (protein phosphatase 1, regulatory subunit 9A) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Ppp1r9a (protein phosphatase 1, regulatory subunit 9A) Mus musculus
Analyze
Symbol: Ppp1r9a
Name: protein phosphatase 1, regulatory subunit 9A
RGD ID: 1552999
MGI Page MGI
Description: Predicted to enable several functions, including actin filament binding activity; enzyme binding activity; and transmembrane transporter binding activity. Involved in modulation of chemical synaptic transmission. Acts upstream of or within actin filament organization and calcium-mediated signaling. Located in cortical actin cytoskeleton; dendritic spine; and filopodium. Is expressed in several structures, including brain; extraembryonic component; genitourinary system; hemolymphoid system gland; and skeletal muscle. Orthologous to human PPP1R9A (protein phosphatase 1 regulatory subunit 9A).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810430P21Rik; 4930518N04Rik; 5330407E15; A230094E16Rik; BB181831; mKIAA1222; N; neur; Neurabin I; neurabin-1; neurabin-I; neural tissue-specific F-actin binding protein; NRB
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,902,702 - 5,165,661 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,902,917 - 5,165,661 (+)EnsemblGRCm39 Ensembl
GRCm3864,902,872 - 5,165,661 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,902,917 - 5,165,661 (+)EnsemblGRCm38mm10GRCm38
MGSCv3764,853,320 - 5,115,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,853,320 - 5,115,661 (+)NCBIMGSCv36mm8
Celera65,049,683 - 5,311,917 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.86NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (EXP)
1,2-dichloroethane  (EXP)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,3,7,8-Tetrachlorodibenzofuran  (ISO)
4-hydroxyphenyl retinamide  (EXP)
5-(hydroxymethyl)cytosine  (EXP)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
acrylamide  (ISO)
Adenosine, cyclic 3',5'-[hydrogen [p(s)]-phosphorothioate]  (ISO)
Aflatoxin B2 alpha  (ISO)
alpha-pinene  (ISO)
amitrole  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
aristolochic acid A  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
bisphenol A  (EXP,ISO)
Brodifacoum  (ISO)
butanal  (ISO)
caffeine  (ISO)
carbon nanotube  (EXP)
chlorpyrifos  (ISO)
choline  (EXP)
cisplatin  (ISO)
clotrimazole  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
diarsenic trioxide  (ISO)
dioxygen  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
endosulfan  (ISO)
entinostat  (ISO)
ethanol  (EXP)
folic acid  (EXP)
gentamycin  (ISO)
hydralazine  (ISO)
ivermectin  (ISO)
L-methionine  (EXP)
latrunculin B  (ISO)
menadione  (ISO)
methamphetamine  (ISO)
methapyrilene  (ISO)
methimazole  (ISO)
methoxychlor  (ISO)
methylmercury chloride  (ISO)
N-acetyl-beta-D-glucosamine  (ISO)
N-acetyl-D-glucosamine  (ISO)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
ozone  (ISO)
paclitaxel  (ISO)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
phenobarbital  (EXP,ISO)
phenyl acetate  (ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
quercetin  (ISO)
rotenone  (EXP)
SB 431542  (ISO)
selenium atom  (ISO)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sulfadimethoxine  (ISO)
sulforaphane  (EXP)
temozolomide  (ISO)
testosterone enanthate  (ISO)
thapsigargin  (ISO)
trichostatin A  (ISO)
trimellitic anhydride  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Transcriptional changes in Huntington disease identified using genome-wide expression profiling and cross-platform analysis. Becanovic K, etal., Hum Mol Genet. 2010 Apr 15;19(8):1438-52. doi: 10.1093/hmg/ddq018. Epub 2010 Jan 20.
2. Neurabin scaffolding of adenosine receptor and RGS4 regulates anti-seizure effect of endogenous adenosine. Chen Y, etal., J Neurosci. 2012 Feb 22;32(8):2683-95. doi: 10.1523/JNEUROSCI.4125-11.2011.
3. Mouse brain organization revealed through direct genome-scale TF expression analysis. Gray PA, etal., Science 2004 Dec 24;306(5705):2255-7.
4. Mitochondrial prohibitins and septin 9 are implicated in the onset of rat hepatocarcinogenesis. Kakehashi A, etal., Toxicol Sci. 2011 Jan;119(1):61-72. doi: 10.1093/toxsci/kfq307. Epub 2010 Oct 8.
5. MGDs mouse GO annotations MGD data from the GO Consortium
6. Prediction of the coding sequences of mouse homologues of KIAA gene: II. The complete nucleotide sequences of 400 mouse KIAA-homologous cDNAs identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, etal., DNA Res 2003 Feb 28;10(1):35-48.
7. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
8. Mouse MP Annotation Import Pipeline RGD automated import pipeline
9. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
10. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
11. The sigma-1 receptor enhances brain plasticity and functional recovery after experimental stroke. Ruscher K, etal., Brain. 2011 Mar;134(Pt 3):732-46. doi: 10.1093/brain/awq367. Epub 2011 Jan 28.
12. Combined comparative and chemical proteomics on the mechanisms of levo-tetrahydropalmatine-induced antinociception in the formalin test. Wang C, etal., J Proteome Res. 2010 Jun 4;9(6):3225-34. doi: 10.1021/pr1001274.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12016225   PMID:12477932   PMID:12520002   PMID:12840045   PMID:14610273   PMID:15016827   PMID:15996550  
PMID:16141072   PMID:16141073   PMID:16341224   PMID:16525025   PMID:16600521   PMID:16602821   PMID:17464283   PMID:17967808   PMID:18183288   PMID:18480470   PMID:18554416   PMID:18799693  
PMID:20124353   PMID:20168089   PMID:20686481   PMID:21247477   PMID:21267068   PMID:21677750   PMID:21873635   PMID:26244553   PMID:27507650   PMID:28671696   PMID:28700667   PMID:28706196  
PMID:29518331   PMID:29786422   PMID:30562941   PMID:37758766  


Genomics

Comparative Map Data
Ppp1r9a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3964,902,702 - 5,165,661 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl64,902,917 - 5,165,661 (+)EnsemblGRCm39 Ensembl
GRCm3864,902,872 - 5,165,661 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl64,902,917 - 5,165,661 (+)EnsemblGRCm38mm10GRCm38
MGSCv3764,853,320 - 5,115,661 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3664,853,320 - 5,115,661 (+)NCBIMGSCv36mm8
Celera65,049,683 - 5,311,917 (+)NCBICelera
Cytogenetic Map6A1NCBI
cM Map61.86NCBI
PPP1R9A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38794,907,236 - 95,296,415 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl794,907,202 - 95,296,415 (+)EnsemblGRCh38hg38GRCh38
GRCh37794,536,906 - 94,925,727 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36794,374,885 - 94,763,663 (+)NCBINCBI36Build 36hg18NCBI36
Build 34794,185,142 - 94,567,392NCBI
Celera789,235,114 - 89,624,424 (+)NCBICelera
Cytogenetic Map7q21.3NCBI
HuRef789,144,178 - 89,532,759 (+)NCBIHuRef
CHM1_1794,466,972 - 94,855,738 (+)NCBICHM1_1
T2T-CHM13v2.0796,143,048 - 96,532,571 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2793,865,965 - 94,254,723 (+)NCBI
Ppp1r9a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8433,936,949 - 34,258,927 (+)NCBIGRCr8
mRatBN7.2432,970,501 - 33,292,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl433,024,450 - 33,286,907 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx437,980,927 - 38,251,396 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0433,907,063 - 34,177,535 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0432,317,198 - 32,587,313 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0429,976,485 - 30,247,371 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl429,978,739 - 30,241,911 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0429,856,082 - 30,154,334 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4429,654,468 - 29,928,476 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1429,695,157 - 29,966,996 (+)NCBI
Celera428,548,989 - 28,813,836 (+)NCBICelera
Cytogenetic Map4q21NCBI
Ppp1r9a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543211,608,382 - 11,886,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495543211,607,269 - 11,891,568 (+)NCBIChiLan1.0ChiLan1.0
PPP1R9A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v26112,751,561 - 113,136,320 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan17161,016,200 - 161,400,959 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0786,863,919 - 87,251,634 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.17100,453,090 - 100,839,325 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl7100,455,357 - 100,833,220 (+)Ensemblpanpan1.1panPan2
PPP1R9A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11420,251,791 - 20,563,315 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1420,251,738 - 20,557,208 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1419,810,502 - 20,122,327 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01420,073,523 - 20,385,742 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1420,073,561 - 20,383,314 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11420,218,353 - 20,530,386 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01419,953,584 - 20,265,515 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01420,211,007 - 20,522,870 (+)NCBIUU_Cfam_GSD_1.0
Ppp1r9a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511833,585,519 - 33,881,736 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365854,981,555 - 5,277,185 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PPP1R9A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl974,635,403 - 74,940,362 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1974,635,285 - 74,944,050 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2981,987,561 - 82,105,844 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PPP1R9A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12153,744,202 - 54,129,709 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2153,747,857 - 54,127,005 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604250,200,716 - 50,591,491 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ppp1r9a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248131,588,261 - 1,945,788 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248131,587,567 - 1,951,620 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ppp1r9a
8432 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:5269
Count of miRNA genes:1033
Interacting mature miRNAs:1567
Transcripts:ENSMUST00000035813, ENSMUST00000065842, ENSMUST00000164110, ENSMUST00000168998, ENSMUST00000175889, ENSMUST00000175962, ENSMUST00000176136, ENSMUST00000176263, ENSMUST00000176729, ENSMUST00000177153, ENSMUST00000177338, ENSMUST00000177456
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
14746985Manh59_mmandible shape 59 (mouse)6120847193Mouse
1301178Lith10_mlithogenic gene 10 (mouse)Not determined6121465015Mouse
10043884Bhr8_mbronchial hyperresponsiveness 8 (mouse)Not determined6121465015Mouse
10044000Mobq9_mmultigenetic obesity QTL 9 (mouse)Not determined6121465015Mouse
1357503Nhdlq5_mnon-HDL QTL 5 (mouse)Not determined6121465015Mouse
12904934Edlmmq4_mextensor digitorum longus muscle mass QTL 4 (mouse)6125514064Mouse
12904942Tammq3_mtibialis anterior muscle mass QTL 3 (mouse)6125514064Mouse
12904955Gmmq3_mgastrocnemius muscle mass QTL 3 (mouse)6125514064Mouse
1301131Chol2_mcholesterol 2 (mouse)Not determined6132144495Mouse
5491191Mobq2_mmultigenic obesity QTL 2 (mouse)Not determined6132144495Mouse
1302024Skull7_mskull morphology 7 (mouse)Not determined6132144495Mouse
15039372Nmrs22_mNAFLD-associated magnetic resonance shift 22 (mouse)6147633435476334Mouse
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
14700782Syncq6_msynovial calcification QTL 6 (mouse)641770005219000Mouse
1300731Smdq3_msegregation of mitochondrial DNA QTL 3 (mouse)Not determined6424920638249325Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
11353836Bmiq1_mbody mass index QTL 1 (mouse)6450382329751333Mouse
11353840Bmiq2_mbody mass index QTL 2 (mouse)6450382345291115Mouse
1357520Axtq2_manxiety QTL 2 (mouse)Not determined6450382348703611Mouse
1357481Aaj2_manxiety in A/J 2 (mouse)Not determined6450382348703611Mouse
11353841Bmiq3_mbody mass index QTL 3 (mouse)6450382348703611Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse

Markers in Region
BB181831  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3865,165,404 - 5,165,540UniSTSGRCm38
MGSCv3765,115,404 - 5,115,540UniSTSGRCm37
Celera65,311,660 - 5,311,796UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.5UniSTS
Whitehead/MRC_RH638.15UniSTS
UniSTS:235381  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3865,121,132 - 5,121,330UniSTSGRCm38
MGSCv3765,071,132 - 5,071,330UniSTSGRCm37
Celera65,267,391 - 5,267,589UniSTS
Cytogenetic Map6A1UniSTS
cM Map60.5UniSTS
Ppp1r9a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3865,077,501 - 5,077,614UniSTSGRCm38
MGSCv3765,109,820 - 5,110,115UniSTSGRCm37
Celera65,223,433 - 5,223,546UniSTS
Cytogenetic Map6A1UniSTS
cM Map6 UniSTS
cM Map60.5UniSTS
Ppp1r9a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm3865,159,820 - 5,160,115UniSTSGRCm38
MGSCv3765,109,820 - 5,110,115UniSTSGRCm37
Celera65,306,075 - 5,306,370UniSTS
Cytogenetic Map6A1UniSTS
cM Map6 UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001363809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401494 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001401496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181595 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_156747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505070 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505072 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505073 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505075 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505080 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017321591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166122 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166123 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_003956199 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942955 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB091828 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC068500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC074225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK029737 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK030399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK039087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK122472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135170 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK138313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK158559 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY308065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC028895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048729 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC053748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466533 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000035813   ⟹   ENSMUSP00000046906
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,903,320 - 5,165,661 (+)Ensembl
GRCm38.p6 Ensembl64,903,320 - 5,165,661 (+)Ensembl
RefSeq Acc Id: ENSMUST00000065842
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl65,113,459 - 5,116,508 (+)Ensembl
GRCm38.p6 Ensembl65,113,459 - 5,116,508 (+)Ensembl
RefSeq Acc Id: ENSMUST00000164110
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,903,432 - 5,164,516 (+)Ensembl
GRCm38.p6 Ensembl64,903,432 - 5,164,516 (+)Ensembl
RefSeq Acc Id: ENSMUST00000168998   ⟹   ENSMUSP00000126643
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,902,974 - 5,078,491 (+)Ensembl
GRCm38.p6 Ensembl64,902,974 - 5,078,491 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175889   ⟹   ENSMUSP00000135629
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,902,917 - 5,159,590 (+)Ensembl
GRCm38.p6 Ensembl64,902,917 - 5,159,590 (+)Ensembl
RefSeq Acc Id: ENSMUST00000175962   ⟹   ENSMUSP00000135360
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,903,373 - 5,009,767 (+)Ensembl
GRCm38.p6 Ensembl64,903,373 - 5,009,767 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl65,110,659 - 5,113,787 (+)Ensembl
GRCm38.p6 Ensembl65,110,659 - 5,113,787 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176263   ⟹   ENSMUSP00000134937
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,903,018 - 5,160,221 (+)Ensembl
GRCm38.p6 Ensembl64,903,018 - 5,160,221 (+)Ensembl
RefSeq Acc Id: ENSMUST00000176729   ⟹   ENSMUSP00000134909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,906,407 - 5,154,249 (+)Ensembl
GRCm38.p6 Ensembl64,906,407 - 5,154,249 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177153   ⟹   ENSMUSP00000135485
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,905,416 - 5,159,809 (+)Ensembl
GRCm38.p6 Ensembl64,905,416 - 5,159,809 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177338   ⟹   ENSMUSP00000135634
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,903,788 - 4,906,787 (+)Ensembl
GRCm38.p6 Ensembl64,903,788 - 4,906,787 (+)Ensembl
RefSeq Acc Id: ENSMUST00000177456   ⟹   ENSMUSP00000134943
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl64,905,416 - 5,159,817 (+)Ensembl
GRCm38.p6 Ensembl64,905,416 - 5,159,817 (+)Ensembl
RefSeq Acc Id: NM_001363809   ⟹   NP_001350738
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,902,975 - 5,165,661 (+)NCBI
GRCm3864,902,975 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001401494   ⟹   NP_001388423
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,902,975 - 5,165,661 (+)NCBI
RefSeq Acc Id: NM_001401496   ⟹   NP_001388425
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,902,975 - 5,165,661 (+)NCBI
RefSeq Acc Id: NM_181595   ⟹   NP_853626
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,311 - 5,165,661 (+)NCBI
GRCm3864,903,311 - 5,165,661 (+)NCBI
MGSCv3764,853,320 - 5,115,661 (+)RGD
Celera65,049,683 - 5,311,917 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: NR_156747
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,311 - 5,165,661 (+)NCBI
GRCm3864,903,311 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505070   ⟹   XP_006505133
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,165,661 (+)NCBI
GRCm3864,903,281 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505072   ⟹   XP_006505135
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,486 - 5,165,661 (+)NCBI
GRCm3864,903,486 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505073   ⟹   XP_006505136
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,165,661 (+)NCBI
GRCm3864,903,280 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505075   ⟹   XP_006505138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,165,661 (+)NCBI
GRCm3864,903,281 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505076   ⟹   XP_006505139
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,165,661 (+)NCBI
GRCm3864,903,281 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505078   ⟹   XP_006505141
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,165,661 (+)NCBI
GRCm3864,903,281 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505080   ⟹   XP_006505143
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,165,661 (+)NCBI
GRCm3864,903,282 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505082   ⟹   XP_006505145
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,133,427 (+)NCBI
GRCm3864,903,281 - 5,133,427 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017321591   ⟹   XP_017177080
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,121,372 (+)NCBI
GRCm3864,903,281 - 5,133,427 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166122   ⟹   XP_036022015
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,902,702 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166123   ⟹   XP_036022016
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,486 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166124   ⟹   XP_036022017
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,123 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166125   ⟹   XP_036022018
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,903,486 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166126   ⟹   XP_036022019
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,902,702 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036166127   ⟹   XP_036022020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3965,022,677 - 5,165,661 (+)NCBI
Sequence:
RefSeq Acc Id: XR_003956199
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,902,702 - 5,154,040 (+)NCBI
GRCm3864,902,872 - 5,154,040 (+)NCBI
Sequence:
RefSeq Acc Id: XR_004942955
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3964,902,702 - 5,154,040 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001350738 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388423 (Get FASTA)   NCBI Sequence Viewer  
  NP_001388425 (Get FASTA)   NCBI Sequence Viewer  
  NP_853626 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505133 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505135 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505136 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505138 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505139 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505141 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505143 (Get FASTA)   NCBI Sequence Viewer  
  XP_006505145 (Get FASTA)   NCBI Sequence Viewer  
  XP_017177080 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022015 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022016 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022017 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022018 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022019 (Get FASTA)   NCBI Sequence Viewer  
  XP_036022020 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48729 (Get FASTA)   NCBI Sequence Viewer  
  AAH53748 (Get FASTA)   NCBI Sequence Viewer  
  AAQ77229 (Get FASTA)   NCBI Sequence Viewer  
  BAC26944 (Get FASTA)   NCBI Sequence Viewer  
  BAC65754 (Get FASTA)   NCBI Sequence Viewer  
  BAC77245 (Get FASTA)   NCBI Sequence Viewer  
  BAE22449 (Get FASTA)   NCBI Sequence Viewer  
  BAE23620 (Get FASTA)   NCBI Sequence Viewer  
  EDL13974 (Get FASTA)   NCBI Sequence Viewer  
  EDL13975 (Get FASTA)   NCBI Sequence Viewer  
  EDL13976 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000046906
  ENSMUSP00000046906.3
  ENSMUSP00000126643.3
  ENSMUSP00000134909.2
  ENSMUSP00000134937
  ENSMUSP00000134937.2
  ENSMUSP00000134943
  ENSMUSP00000134943.2
  ENSMUSP00000135360.2
  ENSMUSP00000135485
  ENSMUSP00000135485.2
  ENSMUSP00000135629
  ENSMUSP00000135629.2
  ENSMUSP00000135634.2
RefSeq Acc Id: NP_853626   ⟸   NM_181595
- Peptide Label: isoform 1
- UniProtKB: Q7TN74 (UniProtKB/TrEMBL),   H3BL28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505133   ⟸   XM_006505070
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_006505136   ⟸   XM_006505073
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006505145   ⟸   XM_006505082
- Peptide Label: isoform X10
- UniProtKB: H3BJD0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505141   ⟸   XM_006505078
- Peptide Label: isoform X6
- UniProtKB: H3BL28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505138   ⟸   XM_006505075
- Peptide Label: isoform X3
- UniProtKB: H3BL28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505139   ⟸   XM_006505076
- Peptide Label: isoform X4
- UniProtKB: H3BJD6 (UniProtKB/TrEMBL),   H3BL28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505143   ⟸   XM_006505080
- Peptide Label: isoform X8
- UniProtKB: H3BL28 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006505135   ⟸   XM_006505072
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017177080   ⟸   XM_017321591
- Peptide Label: isoform X11
- UniProtKB: H3BKQ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001350738   ⟸   NM_001363809
- Peptide Label: isoform 1
- UniProtKB: Q7TN74 (UniProtKB/TrEMBL),   H3BL28 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000135485   ⟸   ENSMUST00000177153
RefSeq Acc Id: ENSMUSP00000135634   ⟸   ENSMUST00000177338
RefSeq Acc Id: ENSMUSP00000134943   ⟸   ENSMUST00000177456
RefSeq Acc Id: ENSMUSP00000126643   ⟸   ENSMUST00000168998
RefSeq Acc Id: ENSMUSP00000046906   ⟸   ENSMUST00000035813
RefSeq Acc Id: ENSMUSP00000134909   ⟸   ENSMUST00000176729
RefSeq Acc Id: ENSMUSP00000134937   ⟸   ENSMUST00000176263
RefSeq Acc Id: ENSMUSP00000135629   ⟸   ENSMUST00000175889
RefSeq Acc Id: ENSMUSP00000135360   ⟸   ENSMUST00000175962
RefSeq Acc Id: XP_036022015   ⟸   XM_036166122
- Peptide Label: isoform X3
- UniProtKB: H3BL28 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036022019   ⟸   XM_036166126
- Peptide Label: isoform X9
- UniProtKB: H3BL28 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036022017   ⟸   XM_036166124
- Peptide Label: isoform X5
RefSeq Acc Id: XP_036022016   ⟸   XM_036166123
- Peptide Label: isoform X3
- UniProtKB: H3BL28 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036022018   ⟸   XM_036166125
- Peptide Label: isoform X7
- UniProtKB: Q7TN74 (UniProtKB/TrEMBL),   H3BL28 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036022020   ⟸   XM_036166127
- Peptide Label: isoform X12
RefSeq Acc Id: NP_001388425   ⟸   NM_001401496
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001388423   ⟸   NM_001401494
- Peptide Label: isoform 3
Protein Domains
PDZ   SAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-H3BJD6-F1-model_v2 AlphaFold H3BJD6 1-1292 view protein structure

Promoters
RGD ID:6839712
Promoter ID:MM_KWN:45094
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell
Transcripts:NM_181595,   UC009AVX.1,   UC009AVZ.1,   UC009AWA.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3664,852,886 - 4,853,677 (+)MPROMDB
RGD ID:6888942
Promoter ID:EPDNEW_M7922
Type:initiation region
Name:Ppp1r9a_1
Description:Mus musculus protein phosphatase 1, regulatory subunit 9A , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3864,902,994 - 4,903,054EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2442401 AgrOrtholog
Ensembl Genes ENSMUSG00000032827 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000035813 ENTREZGENE
  ENSMUST00000035813.9 UniProtKB/TrEMBL
  ENSMUST00000164110 ENTREZGENE
  ENSMUST00000168998.9 UniProtKB/TrEMBL
  ENSMUST00000175889 ENTREZGENE
  ENSMUST00000175889.8 UniProtKB/TrEMBL
  ENSMUST00000175962.2 UniProtKB/TrEMBL
  ENSMUST00000176263 ENTREZGENE
  ENSMUST00000176263.8 UniProtKB/TrEMBL
  ENSMUST00000176729.8 UniProtKB/TrEMBL
  ENSMUST00000177153 ENTREZGENE
  ENSMUST00000177153.8 UniProtKB/TrEMBL
  ENSMUST00000177338.2 UniProtKB/TrEMBL
  ENSMUST00000177456 ENTREZGENE
  ENSMUST00000177456.8 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
  2.30.42.10 UniProtKB/TrEMBL
InterPro Neurabin-1/2_PDZ UniProtKB/TrEMBL
  Neurabin-like UniProtKB/TrEMBL
  PDZ UniProtKB/TrEMBL
  PDZ_sf UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
  SAM/pointed UniProtKB/TrEMBL
MGD MGI:2442401 ENTREZGENE
NCBI Gene 243725 ENTREZGENE
PANTHER PTHR16154 UniProtKB/TrEMBL
  PTHR16154:SF22 UniProtKB/TrEMBL
Pfam PDZ UniProtKB/TrEMBL
  PDZ_5 UniProtKB/TrEMBL
  SAM_2 UniProtKB/TrEMBL
PhenoGen Ppp1r9a PhenoGen
PROSITE PDZ UniProtKB/TrEMBL
  SAM_DOMAIN UniProtKB/TrEMBL
SMART PDZ UniProtKB/TrEMBL
  SAM UniProtKB/TrEMBL
Superfamily-SCOP PDZ UniProtKB/TrEMBL
  SAM_homology UniProtKB/TrEMBL
UniProt H3BJA6_MOUSE UniProtKB/TrEMBL
  H3BJD0 ENTREZGENE, UniProtKB/TrEMBL
  H3BJD6 ENTREZGENE, UniProtKB/TrEMBL
  H3BKE7_MOUSE UniProtKB/TrEMBL
  H3BKQ7 ENTREZGENE, UniProtKB/TrEMBL
  H3BL28 ENTREZGENE, UniProtKB/TrEMBL
  Q3UUK5_MOUSE UniProtKB/TrEMBL
  Q3UXW4_MOUSE UniProtKB/TrEMBL
  Q7TN74 ENTREZGENE, UniProtKB/TrEMBL
  Q7TSA7_MOUSE UniProtKB/TrEMBL
  Q80TH3_MOUSE UniProtKB/TrEMBL
  Q80ZL7_MOUSE UniProtKB/TrEMBL
  Q8BMP0_MOUSE UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-05-29 Ppp1r9a  protein phosphatase 1, regulatory subunit 9A    protein phosphatase 1, regulatory (inhibitor) subunit 9A  Symbol and/or name change 5135510 APPROVED