Polr3f (polymerase (RNA) III (DNA directed) polypeptide F) - Rat Genome Database

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Gene: Polr3f (polymerase (RNA) III (DNA directed) polypeptide F) Mus musculus
Analyze
Symbol: Polr3f
Name: polymerase (RNA) III (DNA directed) polypeptide F
RGD ID: 1552445
MGI Page MGI
Description: Predicted to enable 4 iron, 4 sulfur cluster binding activity and double-stranded DNA binding activity. Predicted to be involved in positive regulation of innate immune response and positive regulation of interferon-beta production. Predicted to act upstream of or within defense response to virus and innate immune response. Predicted to be located in nucleus. Predicted to be part of RNA polymerase III complex. Is expressed in several structures, including alimentary system; brain; genitourinary system; integumental system; and respiratory system. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human POLR3F (RNA polymerase III subunit F).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810411G20Rik; 3010019O03Rik; 3110032A07Rik; DNA-directed RNA polymerase III subunit F; DNA-directed RNA polymerase III subunit RPC6; MGC11656; RNA polymerase III subunit C6; RP; RPC; RPC39; RPC6
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm19004  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392144,369,665 - 144,383,699 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2144,369,638 - 144,383,915 (+)EnsemblGRCm39 Ensembl
GRCm382144,527,745 - 144,541,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2144,527,718 - 144,541,995 (+)EnsemblGRCm38mm10GRCm38
MGSCv372144,353,481 - 144,367,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362144,219,186 - 144,233,220 (+)NCBIMGSCv36mm8
Celera2145,713,880 - 145,727,891 (+)NCBICelera
Cytogenetic Map2G1NCBI
cM Map271.02NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Cell growth- and differentiation-dependent regulation of RNA polymerase III transcription. Dumay-Odelot H, etal., Cell Cycle. 2010 Sep 15;9(18):3687-99. Epub 2010 Sep 1.
2. Characterization of human RNA polymerase III identifies orthologues for Saccharomyces cerevisiae RNA polymerase III subunits. Hu P, etal., Mol Cell Biol. 2002 Nov;22(22):8044-55.
3. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
4. MGDs mouse GO annotations MGD data from the GO Consortium
5. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
8. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:8889548   PMID:9171375   PMID:10349636   PMID:10623476   PMID:10922068   PMID:11042159   PMID:11076861   PMID:14681479   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17536020  
PMID:17804484   PMID:20059953   PMID:20211142   PMID:21267068   PMID:21677750   PMID:21873635   PMID:30973865   PMID:32325033  


Genomics

Comparative Map Data
Polr3f
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392144,369,665 - 144,383,699 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2144,369,638 - 144,383,915 (+)EnsemblGRCm39 Ensembl
GRCm382144,527,745 - 144,541,779 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2144,527,718 - 144,541,995 (+)EnsemblGRCm38mm10GRCm38
MGSCv372144,353,481 - 144,367,515 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362144,219,186 - 144,233,220 (+)NCBIMGSCv36mm8
Celera2145,713,880 - 145,727,891 (+)NCBICelera
Cytogenetic Map2G1NCBI
cM Map271.02NCBI
POLR3F
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382018,467,390 - 18,484,646 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2018,466,878 - 18,484,648 (+)EnsemblGRCh38hg38GRCh38
GRCh372018,448,034 - 18,465,290 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362018,396,033 - 18,413,287 (+)NCBINCBI36Build 36hg18NCBI36
Build 342018,396,032 - 18,413,284NCBI
Celera2018,522,122 - 18,539,370 (+)NCBICelera
Cytogenetic Map20p11.23NCBI
HuRef2018,410,111 - 18,427,352 (+)NCBIHuRef
CHM1_12018,448,070 - 18,465,321 (+)NCBICHM1_1
T2T-CHM13v2.02018,518,490 - 18,535,746 (+)NCBIT2T-CHM13v2.0
Polr3f
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83152,361,798 - 152,378,169 (+)NCBIGRCr8
mRatBN7.23131,908,466 - 131,924,838 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3131,908,466 - 131,924,837 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3135,837,947 - 135,854,297 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03144,422,029 - 144,438,379 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03142,125,236 - 142,141,587 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03138,684,685 - 138,701,055 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3138,684,685 - 138,701,055 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03145,114,599 - 145,130,969 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43133,074,263 - 133,090,633 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13132,979,881 - 132,993,492 (+)NCBI
Celera3130,802,469 - 130,818,830 (+)NCBICelera
Cytogenetic Map3q41NCBI
Polr3f
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541527,022,081 - 27,036,475 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541527,022,081 - 27,036,475 (+)NCBIChiLan1.0ChiLan1.0
POLR3F
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22119,359,475 - 19,376,694 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12019,356,254 - 19,373,531 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02018,429,402 - 18,447,634 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12018,400,976 - 18,418,225 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2018,400,976 - 18,418,225 (+)Ensemblpanpan1.1panPan2
POLR3F
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1244,715,146 - 4,727,938 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl244,663,302 - 4,727,920 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha244,645,478 - 4,658,267 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0245,122,634 - 5,135,432 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl245,122,048 - 5,135,384 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1244,722,278 - 4,735,065 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0244,826,887 - 4,839,675 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0245,105,490 - 5,118,281 (-)NCBIUU_Cfam_GSD_1.0
Polr3f
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640153,366,993 - 153,383,083 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364851,798,380 - 1,814,163 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364851,796,857 - 1,814,186 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
POLR3F
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1726,719,514 - 26,737,626 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11726,719,339 - 26,737,635 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21730,196,827 - 30,214,671 (-)NCBISscrofa10.2Sscrofa10.2susScr3
POLR3F
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1247,527,351 - 47,546,932 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl247,528,587 - 47,547,412 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660782,261,203 - 2,280,003 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Polr3f
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474119,196,605 - 19,210,403 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474119,196,639 - 19,213,252 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Polr3f
451 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1542
Count of miRNA genes:738
Interacting mature miRNAs:928
Transcripts:ENSMUST00000028914, ENSMUST00000110017, ENSMUST00000134051, ENSMUST00000136999, ENSMUST00000143292, ENSMUST00000152311, ENSMUST00000155567
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse
1302143Bwq5_mbody weight (mouse)Not determined2127664019161664118Mouse
1301031Bdln3_mbody length 3 (mouse)Not determined2127664019161664118Mouse
12880427V25Dq3_mvitamin D inactive form serum level QTL 3 (mouse)2129341920163341920Mouse
1301961Bts1_mbladder tumor susceptibility 1 (mouse)Not determined2132024159166024330Mouse
11049567Lmr28f_mleishmaniasis resistance 28f (mouse)2133144911167145058Mouse
11049566Lmr28e_mleishmaniasis resistance 28e (mouse)2133144911167145058Mouse
11341717Rvfs1_mRift Valley fever susceptibility 1 (mouse)2135432544173449616Mouse
4141703Chlq13_mcirculating hormone level QTL 13 (mouse)Not determined2135699221169699361Mouse
1301907Rends_mrenal disease susceptibility (mouse)Not determined2135699221169699361Mouse
10043956Gnf5_mgrowth and fatness 5 (mouse)Not determined2135699221169699361Mouse
10054066Bwq9_mbody weight QTL 9 (mouse)Not determined2135699221169699361Mouse
1300647Nktcn2_mnatural killer T cell numbers 2 (mouse)Not determined2138737416145893953Mouse
1300846Pbwg11_mpostnatal body weight growth 11 (mouse)Not determined2138966600172966729Mouse
11353826Bdln10_mbody length 10 (mouse)2140441482174441482Mouse
4141281Ssrq1_mstress response QTL 1 (mouse)Not determined142059301145893953Mouse
12801461Intim1_mintima modifier 1 (mouse)2142428347176428450Mouse
12801456Intmrm1_mintima/media ratio modifier 1 (mouse)2142428347176428450Mouse
1301783Bhr1_mbronchial hyperresponsiveness 1 (mouse)Not determined2142593476178442452Mouse
4141033Wg2d_mweight gain in high growth mice 2d (mouse)Not determined143773445160303008Mouse
1357484Bsbob_mBSB obesity (mouse)Not determined2143773445165665019Mouse
1558939Gnf1_mgrowth and fatness 1 (mouse)Not determined2143773445169117924Mouse

Markers in Region
UniSTS:234545  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382144,541,584 - 144,541,860UniSTSGRCm38
MGSCv372144,367,320 - 144,367,596UniSTSGRCm37
Celera2145,727,696 - 145,727,972UniSTS
Cytogenetic Map2H1UniSTS
UniSTS:234546  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382144,530,465 - 144,530,665UniSTSGRCm38
MGSCv372144,356,201 - 144,356,401UniSTSGRCm37
Celera2145,716,589 - 145,716,789UniSTS
Cytogenetic Map2H1UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000028914   ⟹   ENSMUSP00000028914
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2144,369,638 - 144,383,915 (+)Ensembl
GRCm38.p6 Ensembl2144,527,718 - 144,541,995 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110017   ⟹   ENSMUSP00000105644
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2144,369,668 - 144,377,093 (+)Ensembl
GRCm38.p6 Ensembl2144,527,748 - 144,535,173 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134051
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2144,378,096 - 144,380,814 (+)Ensembl
GRCm38.p6 Ensembl2144,536,176 - 144,538,894 (+)Ensembl
RefSeq Acc Id: ENSMUST00000136999
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2144,369,662 - 144,372,615 (+)Ensembl
GRCm38.p6 Ensembl2144,527,742 - 144,530,695 (+)Ensembl
RefSeq Acc Id: ENSMUST00000143292
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2144,374,280 - 144,380,714 (+)Ensembl
GRCm38.p6 Ensembl2144,532,360 - 144,538,794 (+)Ensembl
RefSeq Acc Id: ENSMUST00000152311
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2144,377,861 - 144,378,548 (+)Ensembl
GRCm38.p6 Ensembl2144,535,941 - 144,536,628 (+)Ensembl
RefSeq Acc Id: ENSMUST00000155567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2144,369,700 - 144,376,610 (+)Ensembl
GRCm38.p6 Ensembl2144,527,780 - 144,534,690 (+)Ensembl
RefSeq Acc Id: NM_029763   ⟹   NP_084039
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392144,369,665 - 144,383,699 (+)NCBI
GRCm382144,527,745 - 144,541,779 (+)ENTREZGENE
MGSCv372144,353,481 - 144,367,515 (+)RGD
Celera2145,713,880 - 145,727,891 (+)RGD
cM Map2 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_084039   ⟸   NM_029763
- UniProtKB: Q544K6 (UniProtKB/Swiss-Prot),   Q921X6 (UniProtKB/Swiss-Prot),   Q8C108 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000105644   ⟸   ENSMUST00000110017
RefSeq Acc Id: ENSMUSP00000028914   ⟸   ENSMUST00000028914

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q921X6-F1-model_v2 AlphaFold Q921X6 1-316 view protein structure

Promoters
RGD ID:6832583
Promoter ID:MM_KWN:32044
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day2,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000009562,   OTTMUST00000009563,   OTTMUST00000009565,   OTTMUST00000009567,   OTTMUST00000014896,   UC008MRE.1,   UC008MRF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362144,353,134 - 144,353,634 (-)MPROMDB
RGD ID:6832093
Promoter ID:MM_KWN:32046
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Liver
Transcripts:OTTMUST00000009564,   OTTMUST00000014895,   UC008MRH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362144,361,811 - 144,362,311 (+)MPROMDB
RGD ID:6878992
Promoter ID:EPDNEW_M2947
Type:multiple initiation site
Name:Polr3f_1
Description:Mus musculus polymerase III polypeptide F , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382144,527,759 - 144,527,819EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1924086 AgrOrtholog
Ensembl Genes ENSMUSG00000027427 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028914 ENTREZGENE
  ENSMUST00000028914.9 UniProtKB/Swiss-Prot
  ENSMUST00000110017.3 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RNA_pol_Rpc34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RNA_pol_Rpc34-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:70408 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1924086 ENTREZGENE
NCBI Gene 70408 ENTREZGENE
PANTHER DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12780 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RNA_pol_Rpc34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Polr3f PhenoGen
PIRSF RNA_pol_Rpc34 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt Q544K6 ENTREZGENE
  Q8C108 ENTREZGENE, UniProtKB/TrEMBL
  Q921X6 ENTREZGENE
  Q9CZ23_MOUSE UniProtKB/TrEMBL
  RPC6_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q544K6 UniProtKB/Swiss-Prot