Arcn1 (archain 1) - Rat Genome Database

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Gene: Arcn1 (archain 1) Mus musculus
Analyze
Symbol: Arcn1
Name: archain 1
RGD ID: 1551466
MGI Page MGI
Description: Acts upstream of or within several processes, including Golgi vesicle transport; adult locomotory behavior; and cerebellar Purkinje cell layer maturation. Located in COPI-coated vesicle; Golgi apparatus; and endoplasmic reticulum. Is expressed in several structures, including genitourinary system. Orthologous to human ARCN1 (archain 1).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4632432M07Rik; coatomer subunit delta; delta; delta-coat protein; delta-COP; MGC102316; MGC27546; nur; nur17; pale coat neuro
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm8750   Gm8752  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,653,440 - 44,679,105 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,652,861 - 44,679,142 (-)EnsemblGRCm39 Ensembl
GRCm38944,742,143 - 44,767,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,741,564 - 44,767,845 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,550,226 - 44,575,891 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,492,563 - 44,518,792 (-)NCBIMGSCv36mm8
Celera942,006,873 - 42,032,888 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. MGDs mouse GO annotations MGD data from the GO Consortium
2. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12477932   PMID:12520002   PMID:12904583   PMID:12955145   PMID:14610273   PMID:15489334  
PMID:15782199   PMID:16141072   PMID:16141073   PMID:16476741   PMID:18287559   PMID:18307411   PMID:18799693   PMID:18973680   PMID:20502676   PMID:21267068   PMID:21873635   PMID:22922362  
PMID:24457600   PMID:25044020   PMID:27114526   PMID:28378742   PMID:30013108   PMID:30457570   PMID:30550785   PMID:31162944   PMID:32325033   PMID:32554809   PMID:36114006   PMID:36417873  
PMID:38355793  


Genomics

Comparative Map Data
Arcn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,653,440 - 44,679,105 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,652,861 - 44,679,142 (-)EnsemblGRCm39 Ensembl
GRCm38944,742,143 - 44,767,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,741,564 - 44,767,845 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,550,226 - 44,575,891 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,492,563 - 44,518,792 (-)NCBIMGSCv36mm8
Celera942,006,873 - 42,032,888 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
ARCN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,572,409 - 118,603,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,572,390 - 118,603,033 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,443,124 - 118,473,748 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,948,321 - 117,978,855 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411117,948,320 - 117,978,854NCBI
Celera11115,603,886 - 115,634,520 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,380,702 - 114,411,245 (+)NCBIHuRef
CHM1_111118,329,760 - 118,360,405 (+)NCBICHM1_1
T2T-CHM13v2.011118,591,694 - 118,622,309 (+)NCBIT2T-CHM13v2.0
Arcn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,954,401 - 53,979,005 (-)NCBIGRCr8
mRatBN7.2845,057,617 - 45,082,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,057,619 - 45,082,247 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,552,579 - 50,577,205 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,831,299 - 48,855,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,701,905 - 46,726,513 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,051,257 - 49,075,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,051,246 - 49,075,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,670,182 - 47,694,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,699,348 - 47,725,337 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,708,114 - 47,734,103 (-)NCBI
Celera844,642,433 - 44,667,152 (-)NCBICelera
Cytogenetic Map8q22NCBI
Arcn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,718,132 - 19,753,361 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,718,534 - 19,750,340 (+)NCBIChiLan1.0ChiLan1.0
ARCN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,277,722 - 119,308,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,382,734 - 120,413,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,411,166 - 113,441,792 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,341,427 - 117,371,589 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,341,427 - 117,371,589 (+)Ensemblpanpan1.1panPan2
ARCN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,141,861 - 15,171,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,143,499 - 15,171,586 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,193,398 - 15,222,886 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,084,158 - 15,113,634 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,084,172 - 15,113,604 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,222,595 - 15,252,358 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,126,100 - 15,155,561 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,166,586 - 15,196,066 (-)NCBIUU_Cfam_GSD_1.0
Arcn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,684,134 - 100,713,480 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,617,051 - 3,633,132 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,605,553 - 3,634,889 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,863,559 - 45,897,613 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,863,772 - 45,897,525 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,815,863 - 50,842,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARCN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,964,123 - 109,997,888 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,964,120 - 109,998,290 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,037,795 - 16,073,884 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arcn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,973,551 - 14,013,693 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,973,631 - 14,011,921 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Arcn1
1019 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1086
Count of miRNA genes:579
Interacting mature miRNAs:709
Transcripts:ENSMUST00000034607, ENSMUST00000125164, ENSMUST00000150160
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300532Tbs2_mtuberculosis severity 2 (mouse)Not determined91236997046370114Mouse
10043917Obq37_mobesity QTL 37 (mouse)Not determined91339117547391175Mouse
1357637Si5lq2_mserum IGFBP-5 level QTL 2 (mouse)Not determined91541175149411890Mouse
4141591Cq4_mcholesterol QTL 4 (mouse)Not determined91541175149411890Mouse
1301421Lgth4_mbody length 4 (mouse)Not determined91541175149411890Mouse
4141447Cfmq2_mcystic fibrosis modifier QTL 2 (mouse)Not determined91541175149411890Mouse
12790993Adq1_maortic diameter QTL 1 (mouse)91574962749749627Mouse
11354951Pdcc3_mplasmacytoid dentritic cell compartment 3 (mouse)91574962749749627Mouse
12790997Adq2_maortic diameter QTL 2 (mouse)91574962749749627Mouse
12880415V125Dq7_mvitamin D active form serum level QTL 7 (mouse)91601129650011296Mouse
12880416V125Dq8_mvitamin D active form serum level QTL 8 (mouse)91601129650011296Mouse
13504834Hdlq109_mHDL QTL 109 (mouse)91670964150709641Mouse
1357465Vtbt6_mvertebral trabecular bone trait 6 (mouse)Not determined91697884050978943Mouse
1300643Pvcan2_mprotection against vaginal candidiasis 2 (mouse)Not determined91994340653943525Mouse
1301439Morph2_mmorphine antinociception 2 (mouse)Not determined92015336254153492Mouse
1301883Skull12_mskull morphology 12 (mouse)Not determined92030619754306370Mouse
1301045Sluc10_msusceptibility to lung cancer 10 (mouse)Not determined92030619754306370Mouse
10043950Pbft5_mpercent body fat 5 (mouse)Not determined92030619754306370Mouse
4142352Lmr17_mleishmaniasis resistance 17 (mouse)Not determined92030619754306370Mouse
12904939Edlmmq8_mextensor digitorum longus muscle mass QTL 8 (mouse)92085274054852740Mouse
13208563Bmiq8_mbody mass index QTL 8 (mouse)92491129668907282Mouse
11532712Sluc39d_msusceptibility to lung cancer 39d (mouse)92558748559587581Mouse
11532696Sluc39c_msusceptibility to lung cancer 39c (mouse)92558748559587581Mouse
11532694Sluc39a_msusceptibility to lung cancer 39a (mouse)92558748559587581Mouse
11532695Sluc39b_msusceptibility to lung cancer 39b (mouse)92558748559587581Mouse
10043987Stheal13_msoft tissue heal 13 (mouse)Not determined92679642160796552Mouse
1300932Hdlq17_mHDL QTL 17 (mouse)Not determined92679642160796552Mouse
10043867Mtbcq9_mmultiple trait body composition QTL 9 (mouse)Not determined92679642160796552Mouse
10043878Adip20_madiposity 20 (mouse)Not determined92725119461251323Mouse
10043847Hdlq89_mHDL QTL 89 (mouse)Not determined92929292963293072Mouse
1301782Chol11_mcholesterol 11 (mouse)Not determined92929292963293072Mouse
1301365Ap5q_malcohol preference 5 QTL (mouse)Not determined93005316464053277Mouse
1357746Vtbt7_mvertebral trabecular bone trait 7 (mouse)Not determined93073991564740021Mouse
1302180Actd4_mactivity-distance traveled 4 (mouse)Not determined93243456366434857Mouse
4141148Cq5_mcholesterol QTL 5 (mouse)Not determined93245242166452546Mouse
1301692Hts_mhypothermia sensitivity (mouse)Not determined93251117266511421Mouse
4141323Ptnu3_mproteinuria 3 (mouse)Not determined93288970266889836Mouse
1357709Si5lq3_mserum IGFBP-5 level QTL 3 (mouse)Not determined93311102567111140Mouse
1558872Ibdq1_minflammatory bowel disease QTL 1 (mouse)Not determined93397884073439255Mouse
1301252Etohc3_methanol consumption 3 (mouse)Not determined93503447869034599Mouse
1301972Cocrb8_mcocaine related behavior 8 (mouse)Not determined93503447869034599Mouse
1558968Tbdr1_mbody temperature response to dietary restriction, QTL 1 (mouse)Not determined93503447869034599Mouse
10045613Rapop7_mradiation-induced apoptosis 6 (mouse)Not determined93673624349420511Mouse
1301501Lmr2_mleishmaniasis resistance 2 (mouse)Not determined93694340650111140Mouse
4142042Alpq3_malcohol preference QTL 3 (mouse)Not determined93730619798701707Mouse
10043971Obq32_mobesity QTL 32 (mouse)Not determined93781952871819528Mouse
12790986Pcho9_mplasma cholesterol 9 (mouse)93809957572099575Mouse
12790992Arlsq1_maortic root lesion size QTL 1 (mouse)93809957572099575Mouse
12791002Arlsq2_maortic root lesion size QTL 2 (mouse)93809957572099575Mouse
12738449Spcq2_msperm count QTL 2 (mouse)93939988573399885Mouse
1558993Tdmq1_mtype 2 diabetes modifying QTL 1 (mouse)Not determined94041959451808670Mouse
4141071Ath29_matherosclerosis 29 (mouse)Not determined94041959474607925Mouse
11532693Sluc39_msusceptibility to lung cancer 39 (mouse)94064537448351476Mouse
1301702Brm1_mbrachyury modifier 1 (mouse)Not determined94080504774805204Mouse
12738415Lfibq8_mliver fibrosis QTL 8 (mouse)94140216245343743Mouse
1301558Stheal8_msoft tissue heal 8 (mouse)Not determined94348071477480860Mouse
10045639Heal28_mwound healing/regeneration 28 (mouse)Not determined94348071477480860Mouse
13432191Actrse4_mactivity response to saline/ethanol 4 (mouse)94370321448603195Mouse
1301435Trigq1_mtriglyceride QTL 1 (mouse)Not determined94442817478428262Mouse

Markers in Region
D11Bhm20  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map12D1UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map4E1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map13D2UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map16C4UniSTS
Cytogenetic Map3G1UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map7B1-B2UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic Map10D2UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map11A3.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map19BUniSTS
cM Map1144.15UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_145985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC142113 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028556 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK031385 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK128973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK147747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK170005 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK182325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK204777 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK213335 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK215107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK219764 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008236 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC017124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC023728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC024127 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC034754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050874 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083152 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSMUST00000034607   ⟹   ENSMUSP00000034607
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,652,861 - 44,679,142 (-)Ensembl
GRCm38.p6 Ensembl944,741,564 - 44,767,845 (-)Ensembl
RefSeq Acc Id: ENSMUST00000125164
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,667,324 - 44,671,389 (-)Ensembl
GRCm38.p6 Ensembl944,756,027 - 44,760,092 (-)Ensembl
RefSeq Acc Id: ENSMUST00000150160
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,666,405 - 44,679,095 (-)Ensembl
GRCm38.p6 Ensembl944,755,108 - 44,767,798 (-)Ensembl
RefSeq Acc Id: ENSMUST00000215140
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,675,599 - 44,679,095 (-)Ensembl
GRCm38.p6 Ensembl944,764,302 - 44,767,798 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217194
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,659,190 - 44,661,805 (-)Ensembl
GRCm38.p6 Ensembl944,747,893 - 44,750,508 (-)Ensembl
RefSeq Acc Id: ENSMUST00000217199
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl944,672,643 - 44,675,853 (-)Ensembl
GRCm38.p6 Ensembl944,761,346 - 44,764,556 (-)Ensembl
RefSeq Acc Id: NM_145985   ⟹   NP_666097
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39944,653,440 - 44,679,105 (-)NCBI
GRCm38944,742,143 - 44,767,808 (-)ENTREZGENE
MGSCv37944,550,226 - 44,575,891 (-)RGD
Celera942,006,873 - 42,032,888 (-)RGD
cM Map9 ENTREZGENE
Sequence:
Reference Protein Sequences
RefSeq Acc Id: NP_666097   ⟸   NM_145985
- UniProtKB: Q91W48 (UniProtKB/Swiss-Prot),   Q5XJY5 (UniProtKB/Swiss-Prot),   Q3U4S9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000034607   ⟸   ENSMUST00000034607
Protein Domains
AP complex mu/sigma subunit   MHD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q5XJY5-F1-model_v2 AlphaFold Q5XJY5 1-511 view protein structure

Promoters
RGD ID:6844188
Promoter ID:MM_KWN:57151
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:OTTMUST00000065901,   OTTMUST00000076178,   UC009PEJ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36944,574,826 - 44,575,957 (-)MPROMDB
RGD ID:8669408
Promoter ID:EPDNEW_M12735
Type:initiation region
Name:Arcn1_1
Description:Mus musculus archain 1 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38944,767,813 - 44,767,873EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2387591 AgrOrtholog
Ensembl Genes ENSMUSG00000032096 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000034607 ENTREZGENE
  ENSMUST00000034607.10 UniProtKB/Swiss-Prot
Gene3D-CATH 3.30.450.60 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mu homology domain, subdomain B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AP2_Mu_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  AP_mu_sigma_su UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Coatomer_dsu UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:213827 UniProtKB/Swiss-Prot
MGD MGI:2387591 ENTREZGENE
NCBI Gene 213827 ENTREZGENE
PANTHER COATOMER SUBUNIT DELTA UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR10121 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Adap_comp_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Clat_adaptor_s UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Arcn1 PhenoGen
PROSITE MHD UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49447 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF64356 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt COPD_MOUSE UniProtKB/Swiss-Prot
  Q3TDU1_MOUSE UniProtKB/TrEMBL
  Q3U4S9 ENTREZGENE, UniProtKB/TrEMBL
  Q5XJY5 ENTREZGENE
  Q8C0G7_MOUSE UniProtKB/TrEMBL
  Q8R1S6_MOUSE UniProtKB/TrEMBL
  Q91W48 ENTREZGENE
UniProt Secondary Q91W48 UniProtKB/Swiss-Prot