ARCN1 (archain 1) - Rat Genome Database

Name: ARCN1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: ARCN1 (archain 1) Sus scrofa

Analyze

Symbol:

ARCN1

Name:

archain 1

RGD ID:

14211010

Description:

INVOLVED IN adult locomotory behavior (ortholog); cerebellar Purkinje cell layer maturation (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Ataxia (ortholog); CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); FOUND IN COPI vesicle coat (inferred); COPI-coated vesicle (inferred); COPI-coated vesicle membrane (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coatomer subunit delta

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	ARCN1 (archain 1)	HGNC	Ensembl, Inparanoid, NCBI, OMA, OrthoDB, Panther, Treefam
Mus musculus (house mouse):	Arcn1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Arcn1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Arcn1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	ARCN1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	ARCN1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Arcn1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	ARCN1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Arcn1 (archain 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	45,863,559 - 45,897,613 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	45,863,772 - 45,897,525 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	50,815,863 - 50,842,076 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Ataxia (ISO)

CD3epsilon deficiency (ISO)

Chromosome 11, Partial Trisomy 11q (ISO)

Dwarfism (ISO)

genetic disease (ISO)

glycogen storage disease Ib (ISO)

immunodeficiency 17 (ISO)

immunodeficiency 18 (ISO)

immunodeficiency 19 (ISO)

inflammatory bowel disease 28 (ISO)

isolated microphthalmia 5 (ISO)

long QT syndrome 10 (ISO)

microcephaly (ISO)

RASopathy (ISO)

SHORT STATURE-MICROGNATHIA SYNDROME (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

adult locomotory behavior (IEA,ISO)

cerebellar Purkinje cell layer maturation (IEA,ISO)

endoplasmic reticulum to Golgi vesicle-mediated transport (IBA,IEA)

establishment of localization in cell (IEA,ISO)

Golgi localization (IBA,IEA)

Golgi vesicle transport (IEA,ISO)

pigmentation (IEA,ISO)

protein transport (IEA)

retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum (IBA,IEA)

vesicle-mediated transport (IEA)

Cellular Component

COPI vesicle coat (IBA,IEA)

COPI-coated vesicle (IEA)

COPI-coated vesicle membrane (IEA)

cytoplasm (IEA)

cytoplasmic vesicle (IEA)

endoplasmic reticulum (IEA)

Golgi apparatus (IEA)

Golgi membrane (IEA)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

Additional References at PubMed

PMID:14681463	PMID:17145712	PMID:30032202

Genomics

Comparative Map Data

ARCN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	45,863,559 - 45,897,613 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	45,863,772 - 45,897,525 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	50,815,863 - 50,842,076 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ARCN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	118,572,409 - 118,603,033 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	118,572,390 - 118,603,033 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	118,443,124 - 118,473,748 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	117,948,321 - 117,978,855 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	117,948,320 - 117,978,854	NCBI
Celera	11	115,603,886 - 115,634,520 (+)	NCBI		Celera
Cytogenetic Map	11	q23.3	NCBI
HuRef	11	114,380,702 - 114,411,245 (+)	NCBI		HuRef
CHM1_1	11	118,329,760 - 118,360,405 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	118,591,694 - 118,622,309 (+)	NCBI		T2T-CHM13v2.0

Arcn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	44,653,440 - 44,679,105 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	44,652,861 - 44,679,142 (-)	Ensembl		GRCm39 Ensembl
GRCm38	9	44,742,143 - 44,767,808 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	44,741,564 - 44,767,845 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	9	44,550,226 - 44,575,891 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	9	44,492,563 - 44,518,792 (-)	NCBI		MGSCv36	mm8
Celera	9	42,006,873 - 42,032,888 (-)	NCBI		Celera
Cytogenetic Map	9	A5.2	NCBI
cM Map	9	24.84	NCBI

Arcn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	53,954,401 - 53,979,005 (-)	NCBI		GRCr8
mRatBN7.2	8	45,057,617 - 45,082,224 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	45,057,619 - 45,082,247 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	8	50,552,579 - 50,577,205 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	48,831,299 - 48,855,922 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	46,701,905 - 46,726,513 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	49,051,257 - 49,075,861 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	49,051,246 - 49,075,892 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	8	47,670,182 - 47,694,935 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	8	47,699,348 - 47,725,337 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	8	47,708,114 - 47,734,103 (-)	NCBI
Celera	8	44,642,433 - 44,667,152 (-)	NCBI		Celera
Cytogenetic Map	8	q22	NCBI

Arcn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955412	19,718,132 - 19,753,361 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955412	19,718,534 - 19,750,340 (+)	NCBI	ChiLan1.0	ChiLan1.0

ARCN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	119,277,722 - 119,308,264 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	120,382,734 - 120,413,256 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	113,411,166 - 113,441,792 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	117,341,427 - 117,371,589 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	117,341,427 - 117,371,589 (+)	Ensembl	panpan1.1		panPan2

ARCN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	15,141,861 - 15,171,642 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	15,143,499 - 15,171,586 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	15,193,398 - 15,222,886 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	15,084,158 - 15,113,634 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	15,084,172 - 15,113,604 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	15,222,595 - 15,252,358 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	15,126,100 - 15,155,561 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	15,166,586 - 15,196,066 (-)	NCBI		UU_Cfam_GSD_1.0

Arcn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	100,684,134 - 100,713,480 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936542	3,617,051 - 3,633,132 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936542	3,605,553 - 3,634,889 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ARCN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	109,964,123 - 109,997,888 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	109,964,120 - 109,998,290 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666043	16,037,795 - 16,073,884 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Arcn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624784	13,973,551 - 14,013,693 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624784	13,973,631 - 14,011,921 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in ARCN1
565 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium	10	4	3	5	2	23	2	3	3
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003357318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000070	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK348707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01114237	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000028599 ⟹ ENSSSCP00000021552

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	45,863,559 - 45,897,510 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000053716 ⟹ ENSSSCP00000044654

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	45,863,559 - 45,897,510 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000061951 ⟹ ENSSSCP00000038767

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	45,863,818 - 45,897,613 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000070527 ⟹ ENSSSCP00000062305

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	45,863,574 - 45,896,354 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000075413 ⟹ ENSSSCP00000066118

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	45,873,316 - 45,897,511 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000078766 ⟹ ENSSSCP00000067775

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	45,877,107 - 45,897,510 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000091398 ⟹ ENSSSCP00000066552

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	9	45,865,035 - 45,897,510 (+)	Ensembl

RefSeq Acc Id:

XM_003357318 ⟹ XP_003357366

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	45,863,772 - 45,897,525 (+)	NCBI

Sequence:

show sequence

TTCCGGTTGGAGACGTGGCTCGAGGCCGCCATCTTGGCAGGAGGCGAAGCGGCCGGCGCTCCTG
TCAGGGGGGCAGCAGGTTCTGAGCGGCGGGTGCTCCCCTTCCTCCCACCCCAGCCGGAGTCGCA
GTGGAGCTGGAGCGCGGGAGCGCCTCACCACCGCCCTCACCATGGTGTTGTTGGCAGCAGCGGT
CTGCACGAAAGCAGGAAAGGCTATTGTTTCTCGACAATTTGTAGAGATGACCCGAACTCGGATT
GAGGGCTTGTTAGCAGCTTTTCCAAAGCTCATGAACACTGGAAAACAACATACATTTGTTGAAA
CAGAGAGCGTCAGATATGTTTACCAACCTATGGAGAAACTGTACATGGTACTGATCACTACCAA
AAACAGCAATATCTTAGAAGATCTGGAGACTCTAAGGCTCTTTTCAAGAGTGATTCCTGAATAT
TGCCGAGCCTTGGAAGAGAATGAAATATCTGAGCACTGTTTTGATTTGATTTTTGCATTTGATG
AAATTGTTGCCCTCGGATACCGGGAGAATGTTAACCTGGCACAGATCAGAACTTTCACAGAAAT
GGATTCTCATGAGGAGAAGGTGTTCAGAGCAGTGAGAGAGACTCAAGAACGTGAAGCCAAGGCT
GAGATGCGGCGTAAAGCAAAGGAGTTACAACAGGCCCGAAGAGATGCAGAAAGACAGGGCAAAA
AAGCACCAGGATTTGGGGGATTTGGAAGCTCCACAGTATCTGGAAGCAGCACAGCTGCTATGAT
CACAGAGACCATCATTGAAACTGATAAACCAAAAGTGGCACCTGCACCAGCCAGGCCTTCAGGC
CCTAGCAAAGCTTTGAAACTGGGAGCCAAAGGAAAGGAAGTAGATAACTTTGTGGACAAATTGA
AATCTGAAGGTGAAACTATCATGTCCTCCAATATGGGCAAGCGTACCTCTGATGCAACCAAAGT
GCATGCTCCTCCCATTAATATGGAAAGTGTGCACATGAAGATTGAGGAAAAGATCACACTAACC
TGTGGGCGAGATGGAGGATTACAGAATATGGAGTTGCACGGCATGATCATGCTTAGGATCTCAG
ATGATAAATTTGGCCGAATTCGACTTCATGTGGAAAATGAAGATAAGAAAGGGGTGCAACTACA
GACCCATCCAAATGTGGATAAAAAACTTTTCACTGCAGAATCTCTCATTGGCTTGAAGAATCCA
GAGAAGTCATTTCCAGTCAACAGTGATGTAGGAGTGCTAAAGTGGAGACTACAAACCACAGAGG
AATCTTTTATTCCACTGACAATCAATTGCTGGCCCTCGGAAAGTGGAAATGGTTGTGATGTCAA
CATAGAATATGAACTGCAAGAAGATAATTTAGAACTGAATGATGTGATTATCACCATCCCACTC
CCATCTGGTGTTGGTGCACCGGTGATTGGCGAAATTGATGGCGAGTATCGACATGACAGTCGAC
GAAATACTTTGGAGTGGTGCCTGCCAGTGATTGATGCCAAAAATAAGAGCGGCAGCCTTGAGTT
CAGCATTGCTGGGCAGCCCAACGATTTCTTCCCTGTTCAAGTCTCCTTCGTCTCCAAAAAAAAT
TACTGTAACATACAGGTTACCAAAGTGACCCAGGTAGATGGAAACAGCCCTGTAAGGTTTTCCA
CAGAGACCACTTTCCTAGTGGATAAGTATGAAATTCTGTAATACCAAGAAGAAGGAACCGAAAA
GGAACATTTTCAAATTAATAAAGAAGAAGCCAACAGTGGCTGAAGTTTTTTCCAAATCTACAAG
CCATTGGAGACCCTTTTTTTCAAATACAGTGCACGATTCTCTGAGCGCAAAGGACCCTCAACTC
ATCCCCAGTGTTTCAGTGTCACAGAGACATTCTTTGGCAAAGAAATGACACAAAACATAAAAGG
AAAGGCTGCTGATTTCTTTGGCAGATTTTACTGGCCAGCAGGATAGCAAGCTCTCCAGAGACTG
CCCCCAGTTAAAAACTTTCTCTGCCTTCTCCTGAGTTGCTCTTTTATTTTAATCTCTAAATGTA
TTTCATAGTTTGTTTTTTAAAAGTTTTCTCTGTGGAAGATTTTAATCTTTCATACTCTTTTCTT
TTACCTTCATTTTTTTTCTTTCCGTATATCCAATCAAGCACTGGACTCATCTGCAAATAGGTAT
TGCATTTGGCACTCCAGGAACAGGTTGAGCTAATCCGTTTTTGATTTTTGGACTATACAGCTGA
ACTATTTGAGGAGTATGGGATCTAGAAGTTAAAAGCTTAGGCTGTCTAGTGTCTTTTTCCTATA
TCTGTTCATCCCTCCATTCCTTTGCCAAGCTGTCTTTCTTTCAGGCCTGTCCCTCCAGATTAGA
ACACTACTGTGAATCCCATTTGTGTCCATATTAACAGACAGCTGAGAAGCACTTTTCAACTATT
TGGGAGGAAAATGGTCACATTCAGTTAGGGATTTCACACCCATAGGTAATCATGTCTGTGGCTG
GTGCTCCCCAGTCTTCCATTCTCCATATTTTGGGTACTTCGGCAAAAGCATGAAGCTCATGGTC
TTAATAATCCATTCCTTCCCTGAGATTCACCACCTCCCTCTTCCTGGATGTTCTCTATGTCATC
AGTTTTCTCCTTTCTGTCAGAGATGAGGTTATAATATTGGCCCTAAAGTGTCAAGGAGACTCCA
TTTTTTTGCCACCAGGTTTTTAGCATTTCAACATGCAGCTGATTATATTGCTATGTAGGGATTA
CTGATACATACTCCATTTAACCTTCTAGCCTGCCCAACATTTTTTCAGCAGCCTGTCTATCCCT
GTCTCTGAAATCCTTCCTTTTTTTGCCCTAAGGCTTTTCTGTCAAGTGTCGTCATATAGTGGTT
GTTTCTCAACTCCATCTTATTCATTACTTTTTTTCAGTGAAGAAGACATCAGCCAGCCCATCAT
TGGCTTTTAACCCAGTATTGGACTGGTGGTTGGTGGAGTAGCTGTCAGGCTGCAGCCACAGGCC
AGGGGAAGAGACAGGTGACTGTAGATGATCTCCTGCACTTTCAGCAGGTTAGAGGGAACCACTC
CTACTCTGAGTGACATCTGGCCTTCCCTGCAAAGAGTGTACTTACTGTACTTGAAGCAAAGCAG
TCACATACAAATGACCATGGATGGAATTGTTTGCCAAAGAAATTTTTGGCCTTTCCCTTTCCCT
TAACTGCATCAGGGAAGAATACTTACTTATCTCTAGCTTGGTTTCCACATAAGGTTTTTTTGAG
GAAGGGGACTGGGACAAGAAATCTGTCATGTAGTTAAGTAGGTAAGAAATCTTATTAATTCAGT
TTTGTTTGAGAGTTGCTTGTCCATATGATTTTTTAAAAGTGAAGGTTTCACAAAAACTTTTTTT
TCTGAAATTGTTTTTGGGGTAATATTTAAAATGAGAGACATTTTGTAACCCTGTAAAATACATA
GGGAATATAACATTCCAGTGTACACAAAGAAGGCAAATTCTTTAATCAAATAAAGAATATTATA
AAGTGAATGTTTTTCAGA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003357366	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000021552.4
	ENSSSCP00000038767
	ENSSSCP00000038767.3
	ENSSSCP00000044654.3
	ENSSSCP00000062305.1
	ENSSSCP00005024438.1
	ENSSSCP00005024465.1
	ENSSSCP00015016726.1
	ENSSSCP00015016780.1
	ENSSSCP00015016901.1
	ENSSSCP00015017068.1
	ENSSSCP00015017238.1
	ENSSSCP00015017333.1
	ENSSSCP00015017444.1
	ENSSSCP00025006476.1
	ENSSSCP00025006511.1
	ENSSSCP00025006524.1
	ENSSSCP00025006553.1
	ENSSSCP00025006581.1
	ENSSSCP00030037732.1
	ENSSSCP00030037758.1
	ENSSSCP00030037767.1
	ENSSSCP00030037791.1
	ENSSSCP00030037806.1
	ENSSSCP00035003056.1
	ENSSSCP00035003064.1
	ENSSSCP00035003065.1
	ENSSSCP00035003070.1
	ENSSSCP00035003075.1
	ENSSSCP00040035875.1
	ENSSSCP00040035951.1
	ENSSSCP00040036023.1
	ENSSSCP00040036055.1
	ENSSSCP00040036098.1
	ENSSSCP00040036161.1
	ENSSSCP00045021151.1
	ENSSSCP00045021231.1
	ENSSSCP00045021268.1
	ENSSSCP00045021335.1
	ENSSSCP00045021410.1
	ENSSSCP00050044422.1
	ENSSSCP00050044424.1
	ENSSSCP00050044425.1
	ENSSSCP00050044426.1
	ENSSSCP00050044429.1
	ENSSSCP00050044434.1
	ENSSSCP00055035478.1
	ENSSSCP00055035573.1
	ENSSSCP00055035620.1
	ENSSSCP00055035716.1
	ENSSSCP00055035822.1
	ENSSSCP00060006508.1
	ENSSSCP00060006513.1
	ENSSSCP00060006515.1
	ENSSSCP00060006519.1
	ENSSSCP00060006522.1
	ENSSSCP00060006528.1
	ENSSSCP00060006534.1
	ENSSSCP00065045422.1
	ENSSSCP00065045433.1
	ENSSSCP00065045441.1
	ENSSSCP00065045459.1
	ENSSSCP00065045479.1
	ENSSSCP00070004440.1
	ENSSSCP00070004455.1
	ENSSSCP00070004476.1
	ENSSSCP00070004481.1
	ENSSSCP00070004498.1
	ENSSSCP00070004502.1

RefSeq Acc Id:

XP_003357366 ⟸ XM_003357318

- UniProtKB:

A0A4X1SPY8 (UniProtKB/TrEMBL), A0A287A480 (UniProtKB/TrEMBL), A0A8D0QU81 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MVLLAAAVCTKAGKAIVSRQFVEMTRTRIEGLLAAFPKLMNTGKQHTFVETESVRYVYQPMEKL
YMVLITTKNSNILEDLETLRLFSRVIPEYCRALEENEISEHCFDLIFAFDEIVALGYRENVNLA
QIRTFTEMDSHEEKVFRAVRETQEREAKAEMRRKAKELQQARRDAERQGKKAPGFGGFGSSTVS
GSSTAAMITETIIETDKPKVAPAPARPSGPSKALKLGAKGKEVDNFVDKLKSEGETIMSSNMGK
RTSDATKVHAPPINMESVHMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIRLHVENE
DKKGVQLQTHPNVDKKLFTAESLIGLKNPEKSFPVNSDVGVLKWRLQTTEESFIPLTINCWPSE
SGNGCDVNIEYELQEDNLELNDVIITIPLPSGVGAPVIGEIDGEYRHDSRRNTLEWCLPVIDAK
NKSGSLEFSIAGQPNDFFPVQVSFVSKKNYCNIQVTKVTQVDGNSPVRFSTETTFLVDKYEIL

hide sequence

RefSeq Acc Id:

ENSSSCP00000067775 ⟸ ENSSSCT00000078766

RefSeq Acc Id:

ENSSSCP00000066118 ⟸ ENSSSCT00000075413

RefSeq Acc Id:

ENSSSCP00000062305 ⟸ ENSSSCT00000070527

RefSeq Acc Id:

ENSSSCP00000066552 ⟸ ENSSSCT00000091398

RefSeq Acc Id:

ENSSSCP00000038767 ⟸ ENSSSCT00000061951

RefSeq Acc Id:

ENSSSCP00000021552 ⟸ ENSSSCT00000028599

RefSeq Acc Id:

ENSSSCP00000044654 ⟸ ENSSSCT00000053716

Protein Domains

MHD

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000030053	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005024780	UniProtKB/TrEMBL
	ENSSSCG00015030999	UniProtKB/TrEMBL
	ENSSSCG00025012299	UniProtKB/TrEMBL
	ENSSSCG00030058881	UniProtKB/TrEMBL
	ENSSSCG00035007327	UniProtKB/TrEMBL
	ENSSSCG00040060535	UniProtKB/TrEMBL
	ENSSSCG00045017904	UniProtKB/TrEMBL
	ENSSSCG00050074514	UniProtKB/TrEMBL
	ENSSSCG00055022636	UniProtKB/TrEMBL
	ENSSSCG00060012538	UniProtKB/TrEMBL
	ENSSSCG00065074696	UniProtKB/TrEMBL
	ENSSSCG00070002914	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000028599.4	UniProtKB/TrEMBL
	ENSSSCT00000053716.3	UniProtKB/TrEMBL
	ENSSSCT00000061951	ENTREZGENE
	ENSSSCT00000061951.3	UniProtKB/TrEMBL
	ENSSSCT00000070527.1	UniProtKB/TrEMBL
	ENSSSCT00005039885.1	UniProtKB/TrEMBL
	ENSSSCT00005039945.1	UniProtKB/TrEMBL
	ENSSSCT00015042313.1	UniProtKB/TrEMBL
	ENSSSCT00015042454.1	UniProtKB/TrEMBL
	ENSSSCT00015042773.1	UniProtKB/TrEMBL
	ENSSSCT00015043212.1	UniProtKB/TrEMBL
	ENSSSCT00015043675.1	UniProtKB/TrEMBL
	ENSSSCT00015043867.1	UniProtKB/TrEMBL
	ENSSSCT00015044111.1	UniProtKB/TrEMBL
	ENSSSCT00025016287.1	UniProtKB/TrEMBL
	ENSSSCT00025016374.1	UniProtKB/TrEMBL
	ENSSSCT00025016403.1	UniProtKB/TrEMBL
	ENSSSCT00025016461.1	UniProtKB/TrEMBL
	ENSSSCT00025016508.1	UniProtKB/TrEMBL
	ENSSSCT00030082194.1	UniProtKB/TrEMBL
	ENSSSCT00030082237.1	UniProtKB/TrEMBL
	ENSSSCT00030082260.1	UniProtKB/TrEMBL
	ENSSSCT00030082300.1	UniProtKB/TrEMBL
	ENSSSCT00030082330.1	UniProtKB/TrEMBL
	ENSSSCT00035009110.1	UniProtKB/TrEMBL
	ENSSSCT00035009126.1	UniProtKB/TrEMBL
	ENSSSCT00035009129.1	UniProtKB/TrEMBL
	ENSSSCT00035009142.1	UniProtKB/TrEMBL
	ENSSSCT00035009153.1	UniProtKB/TrEMBL
	ENSSSCT00040082389.1	UniProtKB/TrEMBL
	ENSSSCT00040082561.1	UniProtKB/TrEMBL
	ENSSSCT00040082716.1	UniProtKB/TrEMBL
	ENSSSCT00040082783.1	UniProtKB/TrEMBL
	ENSSSCT00040082875.1	UniProtKB/TrEMBL
	ENSSSCT00040083006.1	UniProtKB/TrEMBL
	ENSSSCT00045030523.1	UniProtKB/TrEMBL
	ENSSSCT00045030633.1	UniProtKB/TrEMBL
	ENSSSCT00045030679.1	UniProtKB/TrEMBL
	ENSSSCT00045030766.1	UniProtKB/TrEMBL
	ENSSSCT00045030875.1	UniProtKB/TrEMBL
	ENSSSCT00050102013.1	UniProtKB/TrEMBL
	ENSSSCT00050102019.1	UniProtKB/TrEMBL
	ENSSSCT00050102021.1	UniProtKB/TrEMBL
	ENSSSCT00050102023.1	UniProtKB/TrEMBL
	ENSSSCT00050102028.1	UniProtKB/TrEMBL
	ENSSSCT00050102035.1	UniProtKB/TrEMBL
	ENSSSCT00055044519.1	UniProtKB/TrEMBL
	ENSSSCT00055044647.1	UniProtKB/TrEMBL
	ENSSSCT00055044701.1	UniProtKB/TrEMBL
	ENSSSCT00055044826.1	UniProtKB/TrEMBL
	ENSSSCT00055044969.1	UniProtKB/TrEMBL
	ENSSSCT00060016455.1	UniProtKB/TrEMBL
	ENSSSCT00060016464.1	UniProtKB/TrEMBL
	ENSSSCT00060016468.1	UniProtKB/TrEMBL
	ENSSSCT00060016473.1	UniProtKB/TrEMBL
	ENSSSCT00060016482.1	UniProtKB/TrEMBL
	ENSSSCT00060016499.1	UniProtKB/TrEMBL
	ENSSSCT00060016513.1	UniProtKB/TrEMBL
	ENSSSCT00065102920.1	UniProtKB/TrEMBL
	ENSSSCT00065102939.1	UniProtKB/TrEMBL
	ENSSSCT00065102954.1	UniProtKB/TrEMBL
	ENSSSCT00065102985.1	UniProtKB/TrEMBL
	ENSSSCT00065103029.1	UniProtKB/TrEMBL
	ENSSSCT00070005454.1	UniProtKB/TrEMBL
	ENSSSCT00070005469.1	UniProtKB/TrEMBL
	ENSSSCT00070005494.1	UniProtKB/TrEMBL
	ENSSSCT00070005500.1	UniProtKB/TrEMBL
	ENSSSCT00070005517.1	UniProtKB/TrEMBL
	ENSSSCT00070005521.1	UniProtKB/TrEMBL
Gene3D-CATH	3.30.450.60	UniProtKB/TrEMBL
	Mu homology domain, subdomain B	UniProtKB/TrEMBL
InterPro	AP2_Mu_C_sf	UniProtKB/TrEMBL
	AP_mu_sigma_su	UniProtKB/TrEMBL
	Coatomer_dsu	UniProtKB/TrEMBL
	Longin-like_dom_sf	UniProtKB/TrEMBL
	MHD	UniProtKB/TrEMBL
KEGG Report	ssc:100622860	UniProtKB/TrEMBL
NCBI Gene	ARCN1	ENTREZGENE
PANTHER	COATOMER SUBUNIT DELTA	UniProtKB/TrEMBL
	PTHR10121	UniProtKB/TrEMBL
Pfam	Adap_comp_sub	UniProtKB/TrEMBL
	Clat_adaptor_s	UniProtKB/TrEMBL
PROSITE	MHD	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49447	UniProtKB/TrEMBL
	SSF64356	UniProtKB/TrEMBL
UniProt	A0A287A480	ENTREZGENE, UniProtKB/TrEMBL
	A0A287AL76_PIG	UniProtKB/TrEMBL
	A0A4X1SP78_PIG	UniProtKB/TrEMBL
	A0A4X1SPF9_PIG	UniProtKB/TrEMBL
	A0A4X1SPY8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SQ23_PIG	UniProtKB/TrEMBL
	A0A4X1SQ45_PIG	UniProtKB/TrEMBL
	A0A5G2QF14_PIG	UniProtKB/TrEMBL
	A0A8D0JJE2_PIG	UniProtKB/TrEMBL
	A0A8D0NE38_PIG	UniProtKB/TrEMBL
	A0A8D0QU81	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0QUC4_PIG	UniProtKB/TrEMBL
	A0A8D0XHK1_PIG	UniProtKB/TrEMBL
	A0A8D0YIB0_PIG	UniProtKB/TrEMBL
	A0A8D1UII7_PIG	UniProtKB/TrEMBL
	I3LBY0_PIG	UniProtKB/TrEMBL
VGNC ID	VGNC:85443	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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