ARCN1 (archain 1) - Rat Genome Database

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Gene: ARCN1 (archain 1) Pan paniscus
Analyze
Symbol: ARCN1
Name: archain 1
RGD ID: 11855587
Description: INVOLVED IN adult locomotory behavior (ortholog); cerebellar Purkinje cell layer maturation (ortholog); establishment of localization in cell (ortholog); ASSOCIATED WITH Ataxia (ortholog); CD3epsilon deficiency (ortholog); Chromosome 11, Partial Trisomy 11q (ortholog); FOUND IN COPI vesicle coat (inferred); COPI-coated vesicle (inferred); COPI-coated vesicle membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coatomer subunit delta
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,277,722 - 119,308,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,382,734 - 120,413,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,411,166 - 113,441,792 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,341,427 - 117,371,589 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,341,427 - 117,371,589 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
ARCN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29119,277,722 - 119,308,264 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111120,382,734 - 120,413,256 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011113,411,166 - 113,441,792 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111117,341,427 - 117,371,589 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11117,341,427 - 117,371,589 (+)Ensemblpanpan1.1panPan2
ARCN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811118,572,409 - 118,603,033 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11118,572,390 - 118,603,033 (+)EnsemblGRCh38hg38GRCh38
GRCh3711118,443,124 - 118,473,748 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611117,948,321 - 117,978,855 (+)NCBINCBI36Build 36hg18NCBI36
Build 3411117,948,320 - 117,978,854NCBI
Celera11115,603,886 - 115,634,520 (+)NCBICelera
Cytogenetic Map11q23.3NCBI
HuRef11114,380,702 - 114,411,245 (+)NCBIHuRef
CHM1_111118,329,760 - 118,360,405 (+)NCBICHM1_1
T2T-CHM13v2.011118,591,694 - 118,622,309 (+)NCBIT2T-CHM13v2.0
Arcn1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39944,653,440 - 44,679,105 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl944,652,861 - 44,679,142 (-)EnsemblGRCm39 Ensembl
GRCm38944,742,143 - 44,767,808 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl944,741,564 - 44,767,845 (-)EnsemblGRCm38mm10GRCm38
MGSCv37944,550,226 - 44,575,891 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36944,492,563 - 44,518,792 (-)NCBIMGSCv36mm8
Celera942,006,873 - 42,032,888 (-)NCBICelera
Cytogenetic Map9A5.2NCBI
cM Map924.84NCBI
Arcn1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8853,954,401 - 53,979,005 (-)NCBIGRCr8
mRatBN7.2845,057,617 - 45,082,224 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl845,057,619 - 45,082,247 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx850,552,579 - 50,577,205 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0848,831,299 - 48,855,922 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0846,701,905 - 46,726,513 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0849,051,257 - 49,075,861 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl849,051,246 - 49,075,892 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0847,670,182 - 47,694,935 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4847,699,348 - 47,725,337 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1847,708,114 - 47,734,103 (-)NCBI
Celera844,642,433 - 44,667,152 (-)NCBICelera
Cytogenetic Map8q22NCBI
Arcn1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541219,718,132 - 19,753,361 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541219,718,534 - 19,750,340 (+)NCBIChiLan1.0ChiLan1.0
ARCN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1515,141,861 - 15,171,642 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl515,143,499 - 15,171,586 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha515,193,398 - 15,222,886 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0515,084,158 - 15,113,634 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl515,084,172 - 15,113,604 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1515,222,595 - 15,252,358 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0515,126,100 - 15,155,561 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0515,166,586 - 15,196,066 (-)NCBIUU_Cfam_GSD_1.0
Arcn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947100,684,134 - 100,713,480 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365423,617,051 - 3,633,132 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365423,605,553 - 3,634,889 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARCN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl945,863,559 - 45,897,613 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1945,863,772 - 45,897,525 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2950,815,863 - 50,842,076 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARCN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11109,964,123 - 109,997,888 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1109,964,120 - 109,998,290 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604316,037,795 - 16,073,884 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arcn1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478413,973,551 - 14,013,693 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462478413,973,631 - 14,011,921 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003820039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JARIFH020000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSPPAT00000030159   ⟹   ENSPPAP00000007640
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11117,341,427 - 117,371,589 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030163   ⟹   ENSPPAP00000007642
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11117,341,612 - 117,370,388 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030170   ⟹   ENSPPAP00000007647
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11117,341,612 - 117,369,379 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030171   ⟹   ENSPPAP00000007648
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11117,342,722 - 117,369,379 (+)Ensembl
RefSeq Acc Id: ENSPPAT00000030172   ⟹   ENSPPAP00000007649
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl11117,350,261 - 117,370,043 (+)Ensembl
RefSeq Acc Id: XM_003820039   ⟹   XP_003820087
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v29119,277,722 - 119,308,264 (+)NCBI
NHGRI_mPanPan111120,382,734 - 120,413,256 (+)NCBI
Mhudiblu_PPA_v011113,411,166 - 113,441,792 (+)NCBI
PanPan1.111117,341,427 - 117,371,589 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003820087 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000007640.1
  ENSPPAP00000007642.1
  ENSPPAP00000007647.1
  ENSPPAP00000007648.1
  ENSPPAP00000007649.1
Reference Protein Sequences
RefSeq Acc Id: XP_003820087   ⟸   XM_003820039
- UniProtKB: A0A2R8ZXI8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000007640   ⟸   ENSPPAT00000030159
RefSeq Acc Id: ENSPPAP00000007649   ⟸   ENSPPAT00000030172
RefSeq Acc Id: ENSPPAP00000007647   ⟸   ENSPPAT00000030170
RefSeq Acc Id: ENSPPAP00000007648   ⟸   ENSPPAT00000030171
RefSeq Acc Id: ENSPPAP00000007642   ⟸   ENSPPAT00000030163
Protein Domains
AP complex mu/sigma subunit   MHD


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000026939 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000030159.1 UniProtKB/TrEMBL
  ENSPPAT00000030163.1 UniProtKB/TrEMBL
  ENSPPAT00000030170.1 UniProtKB/TrEMBL
  ENSPPAT00000030171.1 UniProtKB/TrEMBL
  ENSPPAT00000030172.1 UniProtKB/TrEMBL
Gene3D-CATH 3.30.450.60 UniProtKB/TrEMBL
  Mu homology domain, subdomain B UniProtKB/TrEMBL
InterPro AP2_Mu_C_sf UniProtKB/TrEMBL
  AP_mu_sigma_su UniProtKB/TrEMBL
  Coatomer_dsu UniProtKB/TrEMBL
  Longin-like_dom_sf UniProtKB/TrEMBL
  MHD UniProtKB/TrEMBL
KEGG Report pps:100974123 UniProtKB/TrEMBL
NCBI Gene ARCN1 ENTREZGENE
PANTHER COATOMER SUBUNIT DELTA UniProtKB/TrEMBL
  PTHR10121 UniProtKB/TrEMBL
Pfam Adap_comp_sub UniProtKB/TrEMBL
  Clat_adaptor_s UniProtKB/TrEMBL
PROSITE MHD UniProtKB/TrEMBL
Superfamily-SCOP SSF49447 UniProtKB/TrEMBL
  SSF64356 UniProtKB/TrEMBL
UniProt A0A2R8ZRQ3_PANPA UniProtKB/TrEMBL
  A0A2R8ZRQ8_PANPA UniProtKB/TrEMBL
  A0A2R8ZSY0_PANPA UniProtKB/TrEMBL
  A0A2R8ZUW4_PANPA UniProtKB/TrEMBL
  A0A2R8ZXI8 ENTREZGENE, UniProtKB/TrEMBL