ZNF571 (zinc finger protein 571) - Rat Genome Database

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Gene: ZNF571 (zinc finger protein 571) Homo sapiens
Analyze
Symbol: ZNF571
Name: zinc finger protein 571
RGD ID: 1345171
HGNC Page HGNC:25000
Description: Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Located in nucleus.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: FLJ16374; HSPC059; MGC138690
RGD Orthologs
Bonobo
Green Monkey
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381937,564,260 - 37,594,792 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1937,554,782 - 37,594,792 (-)EnsemblGRCh38hg38GRCh38
GRCh371938,055,162 - 38,085,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361942,746,995 - 42,777,513 (-)NCBINCBI36Build 36hg18NCBI36
Build 341942,745,131 - 42,777,531NCBI
Celera1934,855,837 - 34,886,363 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1934,505,248 - 34,535,776 (-)NCBIHuRef
CHM1_11938,055,608 - 38,086,131 (-)NCBICHM1_1
T2T-CHM13v2.01940,366,017 - 40,396,556 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IBA,IDA,IEA)

References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11042152   PMID:11076863   PMID:11230166   PMID:11256614   PMID:12477932   PMID:14702039   PMID:15342556   PMID:15489334   PMID:15489336   PMID:16381901   PMID:21873635   PMID:28514442  
PMID:29507755   PMID:32513696   PMID:33961781   PMID:36168627  


Genomics

Comparative Map Data
ZNF571
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381937,564,260 - 37,594,792 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1937,554,782 - 37,594,792 (-)EnsemblGRCh38hg38GRCh38
GRCh371938,055,162 - 38,085,693 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361942,746,995 - 42,777,513 (-)NCBINCBI36Build 36hg18NCBI36
Build 341942,745,131 - 42,777,531NCBI
Celera1934,855,837 - 34,886,363 (-)NCBICelera
Cytogenetic Map19q13.12NCBI
HuRef1934,505,248 - 34,535,776 (-)NCBIHuRef
CHM1_11938,055,608 - 38,086,131 (-)NCBICHM1_1
T2T-CHM13v2.01940,366,017 - 40,396,556 (-)NCBIT2T-CHM13v2.0
LOC103784476
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22043,693,613 - 43,723,869 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11945,572,166 - 45,602,400 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01934,506,461 - 34,536,700 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11942,231,514 - 42,261,641 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1942,231,514 - 42,269,421 (+)Ensemblpanpan1.1panPan2
ZNF571
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1632,245,180 - 32,272,530 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607310,177,975 - 10,209,715 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in ZNF571
33 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 19q13.12-13.2(chr19:37319377-42738688)x3 copy number gain See cases [RCV000050636] Chr19:37319377..42738688 [GRCh38]
Chr19:37810279..43242840 [GRCh37]
Chr19:42502119..47934680 [NCBI36]
Chr19:19q13.12-13.2		 pathogenic
NM_016536.5(ZNF571):c.389G>A (p.Arg130Gln) single nucleotide variant not specified [RCV004248194] Chr19:37566039 [GRCh38]
Chr19:38056941 [GRCh37]
Chr19:19q13.12		 likely benign
GRCh38/hg38 19p13.2-q13.31(chr19:11227942-44626354)x3 copy number gain See cases [RCV000133888] Chr19:11227942..44626354 [GRCh38]
Chr19:11338618..45129651 [GRCh37]
Chr19:11199618..49821491 [NCBI36]
Chr19:19p13.2-q13.31		 pathogenic
GRCh38/hg38 19q12-13.13(chr19:29661858-38114723)x1 copy number loss See cases [RCV000135879] Chr19:29661858..38114723 [GRCh38]
Chr19:30152765..38605363 [GRCh37]
Chr19:34844605..43297203 [NCBI36]
Chr19:19q12-13.13		 pathogenic
GRCh38/hg38 19q12-13.13(chr19:29671324-37902990)x1 copy number loss See cases [RCV000136794] Chr19:29671324..37902990 [GRCh38]
Chr19:30162231..38393630 [GRCh37]
Chr19:34854071..43085470 [NCBI36]
Chr19:19q12-13.13		 pathogenic
GRCh38/hg38 19q13.12(chr19:37107396-37679721)x1 copy number loss See cases [RCV000141764] Chr19:37107396..37679721 [GRCh38]
Chr19:37598298..38170622 [GRCh37]
Chr19:42290138..42862462 [NCBI36]
Chr19:19q13.12		 uncertain significance
GRCh37/hg19 19q13.12-13.2(chr19:37582250-41630908)x3 copy number gain See cases [RCV000239839] Chr19:37582250..41630908 [GRCh37]
Chr19:19q13.12-13.2		 pathogenic
GRCh37/hg19 19q13.12-13.2(chr19:36685995-38708166)x1 copy number loss Breast ductal adenocarcinoma [RCV000207200] Chr19:36685995..38708166 [GRCh37]
Chr19:19q13.12-13.2		 uncertain significance
chr19:36674305-38652962 complex variant complex Breast ductal adenocarcinoma [RCV000207036] Chr19:36674305..38652962 [GRCh37]
Chr19:19q13.12-13.13		 uncertain significance
GRCh37/hg19 19q13.12-13.13(chr19:36475577-38399402)x3 copy number gain See cases [RCV000240597] Chr19:36475577..38399402 [GRCh37]
Chr19:19q13.12-13.13		 uncertain significance
GRCh37/hg19 19q13.12(chr19:37667443-38079378)x3 copy number gain See cases [RCV000447798] Chr19:37667443..38079378 [GRCh37]
Chr19:19q13.12		 likely benign
NM_016536.5(ZNF571):c.14T>C (p.Leu5Ser) single nucleotide variant not specified [RCV004296712] Chr19:37584093 [GRCh38]
Chr19:38074994 [GRCh37]
Chr19:19q13.12		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888)x3 copy number gain See cases [RCV000511289] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic|uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-58956888) copy number gain See cases [RCV000512296] Chr19:260912..58956888 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
NM_016536.5(ZNF571):c.545A>G (p.Tyr182Cys) single nucleotide variant not specified [RCV004307592] Chr19:37565883 [GRCh38]
Chr19:38056785 [GRCh37]
Chr19:19q13.12		 uncertain significance
GRCh37/hg19 19p13.3-q13.43(chr19:260912-59097160)x3 copy number gain not provided [RCV000752444] Chr19:260912..59097160 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19p13.3-q13.43(chr19:68029-59110290)x3 copy number gain not provided [RCV000752439] Chr19:68029..59110290 [GRCh37]
Chr19:19p13.3-q13.43		 pathogenic
GRCh37/hg19 19q11-13.33(chr19:28271106-49213832)x3 copy number gain not provided [RCV000845733] Chr19:28271106..49213832 [GRCh37]
Chr19:19q11-13.33		 pathogenic
NM_016536.5(ZNF571):c.807T>G (p.His269Gln) single nucleotide variant not specified [RCV004281555] Chr19:37565621 [GRCh38]
Chr19:38056523 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.956G>A (p.Gly319Asp) single nucleotide variant not provided [RCV000969732] Chr19:37565472 [GRCh38]
Chr19:38056374 [GRCh37]
Chr19:19q13.12		 benign
GRCh37/hg19 19q13.12(chr19:37820245-38150396)x3 copy number gain not provided [RCV001007045] Chr19:37820245..38150396 [GRCh37]
Chr19:19q13.12		 likely benign
GRCh37/hg19 19q13.12(chr19:37820377-38083967)x1 copy number loss not provided [RCV001259938] Chr19:37820377..38083967 [GRCh37]
Chr19:19q13.12		 uncertain significance
GRCh37/hg19 19p13.11-q13.2(chr19:19546923-41313229)x3 copy number gain Specific learning disability [RCV001801194] Chr19:19546923..41313229 [GRCh37]
Chr19:19p13.11-q13.2		 pathogenic
GRCh37/hg19 19q13.12-13.13(chr19:37389799-38562489)x3 copy number gain not provided [RCV002472711] Chr19:37389799..38562489 [GRCh37]
Chr19:19q13.12-13.13		 uncertain significance
NM_016536.5(ZNF571):c.1621C>T (p.Arg541Cys) single nucleotide variant Inborn genetic diseases [RCV002749059] Chr19:37564807 [GRCh38]
Chr19:38055709 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1120C>T (p.Arg374Cys) single nucleotide variant not specified [RCV004206625] Chr19:37565308 [GRCh38]
Chr19:38056210 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1160G>C (p.Gly387Ala) single nucleotide variant not specified [RCV004219487] Chr19:37565268 [GRCh38]
Chr19:38056170 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.704G>T (p.Gly235Val) single nucleotide variant not specified [RCV004182285] Chr19:37565724 [GRCh38]
Chr19:38056626 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1649G>A (p.Arg550Lys) single nucleotide variant not specified [RCV004120347] Chr19:37564779 [GRCh38]
Chr19:38055681 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1439G>T (p.Gly480Val) single nucleotide variant not specified [RCV004218628] Chr19:37564989 [GRCh38]
Chr19:38055891 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1706G>A (p.Arg569His) single nucleotide variant not specified [RCV004208761] Chr19:37564722 [GRCh38]
Chr19:38055624 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1561C>A (p.Gln521Lys) single nucleotide variant not specified [RCV004127448] Chr19:37564867 [GRCh38]
Chr19:38055769 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1675G>C (p.Glu559Gln) single nucleotide variant not specified [RCV004119862] Chr19:37564753 [GRCh38]
Chr19:38055655 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.105G>C (p.Met35Ile) single nucleotide variant not specified [RCV004126735] Chr19:37584002 [GRCh38]
Chr19:38074903 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.468A>C (p.Gln156His) single nucleotide variant not specified [RCV004201213] Chr19:37565960 [GRCh38]
Chr19:38056862 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1770G>C (p.Gln590His) single nucleotide variant not specified [RCV004162220] Chr19:37564658 [GRCh38]
Chr19:38055560 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1426T>C (p.Cys476Arg) single nucleotide variant not specified [RCV004179901] Chr19:37565002 [GRCh38]
Chr19:38055904 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1454G>A (p.Arg485His) single nucleotide variant not specified [RCV004159349] Chr19:37564974 [GRCh38]
Chr19:38055876 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.766T>C (p.Cys256Arg) single nucleotide variant not specified [RCV004172498] Chr19:37565662 [GRCh38]
Chr19:38056564 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1702A>G (p.Ser568Gly) single nucleotide variant not specified [RCV004189780] Chr19:37564726 [GRCh38]
Chr19:38055628 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1753C>T (p.Pro585Ser) single nucleotide variant not specified [RCV004153443] Chr19:37564675 [GRCh38]
Chr19:38055577 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1234A>G (p.Ile412Val) single nucleotide variant not specified [RCV004192306] Chr19:37565194 [GRCh38]
Chr19:38056096 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1117T>C (p.Phe373Leu) single nucleotide variant not specified [RCV004185229] Chr19:37565311 [GRCh38]
Chr19:38056213 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.226C>T (p.Arg76Cys) single nucleotide variant not specified [RCV004224082] Chr19:37566202 [GRCh38]
Chr19:38057104 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1808A>C (p.Gln603Pro) single nucleotide variant not specified [RCV004165367] Chr19:37564620 [GRCh38]
Chr19:38055522 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.538C>T (p.Pro180Ser) single nucleotide variant not specified [RCV004086406] Chr19:37565890 [GRCh38]
Chr19:38056792 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.219G>A (p.Met73Ile) single nucleotide variant not specified [RCV004176217] Chr19:37566209 [GRCh38]
Chr19:38057111 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1555G>A (p.Glu519Lys) single nucleotide variant not specified [RCV004265903] Chr19:37564873 [GRCh38]
Chr19:38055775 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.752A>G (p.Tyr251Cys) single nucleotide variant not specified [RCV004280257] Chr19:37565676 [GRCh38]
Chr19:38056578 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.278A>T (p.Lys93Ile) single nucleotide variant not specified [RCV004257219] Chr19:37566150 [GRCh38]
Chr19:38057052 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1016A>G (p.Glu339Gly) single nucleotide variant not specified [RCV004334915] Chr19:37565412 [GRCh38]
Chr19:38056314 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1394A>C (p.His465Pro) single nucleotide variant not specified [RCV004343967] Chr19:37565034 [GRCh38]
Chr19:38055936 [GRCh37]
Chr19:19q13.12		 uncertain significance
GRCh37/hg19 19q11-13.2(chr19:28271146-41508851)x3 copy number gain not specified [RCV003986115] Chr19:28271146..41508851 [GRCh37]
Chr19:19q11-13.2		 pathogenic
NM_016536.5(ZNF571):c.1105G>A (p.Gly369Arg) single nucleotide variant not specified [RCV004494680] Chr19:37565323 [GRCh38]
Chr19:38056225 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1115T>G (p.Phe372Cys) single nucleotide variant not specified [RCV004494681] Chr19:37565313 [GRCh38]
Chr19:38056215 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.853G>A (p.Gly285Arg) single nucleotide variant not specified [RCV004494696] Chr19:37565575 [GRCh38]
Chr19:38056477 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.347A>G (p.Glu116Gly) single nucleotide variant not specified [RCV004494691] Chr19:37566081 [GRCh38]
Chr19:38056983 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.926G>C (p.Cys309Ser) single nucleotide variant not specified [RCV004494697] Chr19:37565502 [GRCh38]
Chr19:38056404 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.700C>T (p.Arg234Cys) single nucleotide variant not specified [RCV004494694] Chr19:37565728 [GRCh38]
Chr19:38056630 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.610T>C (p.Phe204Leu) single nucleotide variant not specified [RCV004494693] Chr19:37565818 [GRCh38]
Chr19:38056720 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.566A>C (p.Gln189Pro) single nucleotide variant not specified [RCV004494692] Chr19:37565862 [GRCh38]
Chr19:38056764 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.328G>A (p.Val110Ile) single nucleotide variant not specified [RCV004494690] Chr19:37566100 [GRCh38]
Chr19:38057002 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.278A>G (p.Lys93Arg) single nucleotide variant not specified [RCV004494688] Chr19:37566150 [GRCh38]
Chr19:38057052 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.242T>A (p.Leu81His) single nucleotide variant not specified [RCV004494687] Chr19:37566186 [GRCh38]
Chr19:38057088 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.227G>A (p.Arg76His) single nucleotide variant not specified [RCV004494686] Chr19:37566201 [GRCh38]
Chr19:38057103 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1372C>T (p.Arg458Cys) single nucleotide variant not specified [RCV004494684] Chr19:37565056 [GRCh38]
Chr19:38055958 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1203T>G (p.Ile401Met) single nucleotide variant not specified [RCV004494683] Chr19:37565225 [GRCh38]
Chr19:38056127 [GRCh37]
Chr19:19q13.12		 uncertain significance
NM_016536.5(ZNF571):c.1172A>G (p.Tyr391Cys) single nucleotide variant not specified [RCV004494682] Chr19:37565256 [GRCh38]
Chr19:38056158 [GRCh37]
Chr19:19q13.12		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1427
Count of miRNA genes:698
Interacting mature miRNAs:772
Transcripts:ENST00000328550, ENST00000358744, ENST00000451802, ENST00000590390, ENST00000590751, ENST00000593133
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
ZBTB16_8745  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh3711114,121,046 - 114,121,560UniSTSGRCh37
GRCh371938,055,082 - 38,056,004UniSTSGRCh37
Build 3611113,626,256 - 113,626,770RGDNCBI36
Celera1934,855,764 - 34,856,686UniSTS
Celera11111,273,948 - 111,274,462RGD
HuRef11110,049,598 - 110,050,112UniSTS
HuRef1934,505,175 - 34,506,097UniSTS
ZNF571__4886  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371938,053,361 - 38,053,886UniSTSGRCh37
Build 361942,745,201 - 42,745,726RGDNCBI36
Celera1934,854,043 - 34,854,568RGD
HuRef1934,503,454 - 34,503,979UniSTS
RH12326  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371938,077,970 - 38,078,128UniSTSGRCh37
Build 361942,769,810 - 42,769,968RGDNCBI36
Celera1934,878,656 - 34,878,814RGD
Cytogenetic Map19q13.12UniSTS
HuRef1934,528,068 - 34,528,226UniSTS
GeneMap99-GB4 RH Map19219.59UniSTS
G34327  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map19q13.12UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component pharyngeal arch
High
Medium 2 1 27 43 8 1 22 32 12 1
Low 2405 2221 1639 564 1310 405 4111 1795 3624 414 1414 1581 171 1 1186 2572 6 2
Below cutoff 31 765 60 60 589 60 237 401 88 5 12 20 3 18 215

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001290314 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001321272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016536 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011527024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026855 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026856 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026857 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026858 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026859 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017026860 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024451531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054321162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC022148 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF161544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK055039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK131351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC040591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113870 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC114479 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP312315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX537401 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471126 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068259 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KF573660 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT585093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000328550   ⟹   ENSP00000333660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1937,562,392 - 37,594,790 (-)Ensembl
RefSeq Acc Id: ENST00000358744   ⟹   ENSP00000351594
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1937,564,569 - 37,594,761 (-)Ensembl
RefSeq Acc Id: ENST00000451802   ⟹   ENSP00000392638
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1937,564,260 - 37,594,792 (-)Ensembl
RefSeq Acc Id: ENST00000590390   ⟹   ENSP00000466225
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1937,566,185 - 37,584,156 (-)Ensembl
RefSeq Acc Id: ENST00000590751   ⟹   ENSP00000468192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1937,554,782 - 37,594,755 (-)Ensembl
RefSeq Acc Id: ENST00000593133   ⟹   ENSP00000467572
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1937,564,253 - 37,594,746 (-)Ensembl
RefSeq Acc Id: NM_001290314   ⟹   NP_001277243
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381937,564,260 - 37,594,792 (-)NCBI
CHM1_11938,055,608 - 38,086,151 (-)NCBI
T2T-CHM13v2.01940,366,017 - 40,396,556 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001321272   ⟹   NP_001308201
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381937,564,260 - 37,594,792 (-)NCBI
CHM1_11938,055,608 - 38,086,105 (-)NCBI
T2T-CHM13v2.01940,366,017 - 40,396,556 (-)NCBI
Sequence:
RefSeq Acc Id: NM_016536   ⟹   NP_057620
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381937,564,260 - 37,594,792 (-)NCBI
GRCh371938,055,155 - 38,085,673 (-)RGD
Build 361942,746,995 - 42,777,513 (-)NCBI Archive
Celera1934,855,837 - 34,886,363 (-)RGD
HuRef1934,505,248 - 34,535,776 (-)RGD
CHM1_11938,055,608 - 38,086,151 (-)NCBI
T2T-CHM13v2.01940,366,017 - 40,396,556 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017026858   ⟹   XP_016882347
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381937,564,260 - 37,594,792 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054321162   ⟹   XP_054177137
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01940,366,017 - 40,396,556 (-)NCBI
Reference Protein Sequences
RefSeq Acc Id: NP_057620   ⟸   NM_016536
- UniProtKB: Q3ZCU3 (UniProtKB/Swiss-Prot),   Q2HIY0 (UniProtKB/Swiss-Prot),   Q9NZX7 (UniProtKB/Swiss-Prot),   Q7Z3V5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001277243   ⟸   NM_001290314
- UniProtKB: Q3ZCU3 (UniProtKB/Swiss-Prot),   Q2HIY0 (UniProtKB/Swiss-Prot),   Q9NZX7 (UniProtKB/Swiss-Prot),   Q7Z3V5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001308201   ⟸   NM_001321272
- UniProtKB: Q3ZCU3 (UniProtKB/Swiss-Prot),   Q2HIY0 (UniProtKB/Swiss-Prot),   Q9NZX7 (UniProtKB/Swiss-Prot),   Q7Z3V5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016882347   ⟸   XM_017026858
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: ENSP00000392638   ⟸   ENST00000451802
RefSeq Acc Id: ENSP00000333660   ⟸   ENST00000328550
RefSeq Acc Id: ENSP00000466225   ⟸   ENST00000590390
RefSeq Acc Id: ENSP00000468192   ⟸   ENST00000590751
RefSeq Acc Id: ENSP00000467572   ⟸   ENST00000593133
RefSeq Acc Id: ENSP00000351594   ⟸   ENST00000358744
RefSeq Acc Id: XP_054177137   ⟸   XM_054321162
- Peptide Label: isoform X1
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q7Z3V5-F1-model_v2 AlphaFold Q7Z3V5 1-609 view protein structure

Promoters
RGD ID:7239755
Promoter ID:EPDNEW_H25621
Type:initiation region
Name:ZNF571_1
Description:zinc finger protein 571
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H25623  EPDNEW_H25625  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381937,594,792 - 37,594,852EPDNEW
RGD ID:7239753
Promoter ID:EPDNEW_H25623
Type:initiation region
Name:ZNF571_2
Description:zinc finger protein 571
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H25621  EPDNEW_H25625  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381937,595,155 - 37,595,215EPDNEW
RGD ID:6796353
Promoter ID:HG_KWN:29798
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000328550,   NM_001172225,   NM_001172226,   NM_016536,   UC002OGR.1,   UC010EFP.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361942,777,081 - 42,777,832 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25000 AgrOrtholog
COSMIC ZNF571 COSMIC
Ensembl Genes ENSG00000180479 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000358744 ENTREZGENE
  ENST00000358744.3 UniProtKB/Swiss-Prot
  ENST00000451802 ENTREZGENE
  ENST00000451802.7 UniProtKB/Swiss-Prot
  ENST00000590390.1 UniProtKB/TrEMBL
  ENST00000590751.5 UniProtKB/TrEMBL
  ENST00000593133 ENTREZGENE
  ENST00000593133.5 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000180479 GTEx
HGNC ID HGNC:25000 ENTREZGENE
Human Proteome Map ZNF571 Human Proteome Map
InterPro FMuLV_rcpt-bd UniProtKB/TrEMBL
  KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:51276 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 51276 ENTREZGENE
PANTHER KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  KRAB DOMAIN-CONTAINING PROTEIN 5-RELATED UniProtKB/TrEMBL
  REDUCED EXPRESSION 2-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 200 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 566 UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 726 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134892585 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP FMuLVrecept-bind UniProtKB/TrEMBL
  SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K5U8_HUMAN UniProtKB/TrEMBL
  K7ELU5_HUMAN UniProtKB/TrEMBL
  K7ERB9_HUMAN UniProtKB/TrEMBL
  Q24JS6_HUMAN UniProtKB/TrEMBL
  Q2HIY0 ENTREZGENE
  Q3ZCU3 ENTREZGENE
  Q7Z3V5 ENTREZGENE
  Q9NZX7 ENTREZGENE
  ZN571_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary Q2HIY0 UniProtKB/Swiss-Prot
  Q3ZCU3 UniProtKB/Swiss-Prot
  Q9NZX7 UniProtKB/Swiss-Prot