Galk2 (galactokinase 2) - Rat Genome Database

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Gene: Galk2 (galactokinase 2) Mus musculus
Analyze
Symbol: Galk2
Name: galactokinase 2
RGD ID: 1318612
MGI Page MGI
Description: Predicted to enable galactokinase activity. Predicted to be involved in galactose metabolic process. Predicted to be located in cytoplasm. Predicted to be active in cytosol. Is expressed in several structures, including alimentary system; brain; cardiovascular system; ear; and genitourinary system. Orthologous to human GALK2 (galactokinase 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2810017M24Rik; AI327030; galNAc kinase; Gk2; N-acetylgalactosamine kinase
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392125,701,029 - 125,826,218 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2125,701,029 - 125,826,219 (+)EnsemblGRCm39 Ensembl
GRCm382125,859,109 - 125,984,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,859,109 - 125,984,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv372125,684,954 - 125,810,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362125,550,659 - 125,675,739 (+)NCBIMGSCv36mm8
Celera2127,103,240 - 127,227,668 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IBA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
2. MGDs mouse GO annotations MGD data from the GO Consortium
3. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10834841   PMID:11042159   PMID:11076861   PMID:12477932   PMID:14610273   PMID:14681479   PMID:15489334   PMID:15782199   PMID:16141072   PMID:16141073  
PMID:18799693   PMID:21267068   PMID:21873635   PMID:28245920   PMID:38355793  


Genomics

Comparative Map Data
Galk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392125,701,029 - 125,826,218 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2125,701,029 - 125,826,219 (+)EnsemblGRCm39 Ensembl
GRCm382125,859,109 - 125,984,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,859,109 - 125,984,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv372125,684,954 - 125,810,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362125,550,659 - 125,675,739 (+)NCBIMGSCv36mm8
Celera2127,103,240 - 127,227,668 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
GALK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381549,155,774 - 49,367,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1549,155,656 - 49,367,869 (+)EnsemblGRCh38hg38GRCh38
GRCh371549,447,971 - 49,624,079 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361547,235,268 - 47,409,294 (+)NCBINCBI36Build 36hg18NCBI36
Build 341547,249,713 - 47,409,294NCBI
Celera1526,341,552 - 26,515,592 (+)NCBICelera
Cytogenetic Map15q21.1-q21.2NCBI
HuRef1526,280,047 - 26,453,966 (+)NCBIHuRef
CHM1_11549,566,269 - 49,740,116 (+)NCBICHM1_1
T2T-CHM13v2.01546,963,986 - 47,175,984 (+)NCBIT2T-CHM13v2.0
Galk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83133,563,524 - 133,696,423 (+)NCBIGRCr8
mRatBN7.23113,110,057 - 113,243,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,110,030 - 113,233,306 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3116,983,472 - 117,108,681 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03125,578,994 - 125,704,199 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03123,239,365 - 123,364,567 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03118,137,097 - 118,268,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,136,838 - 118,268,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03124,661,798 - 124,793,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43113,173,734 - 113,418,061 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3111,972,145 - 112,085,987 (+)NCBICelera
Cytogenetic Map3q36NCBI
Galk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,751,764 - 4,860,584 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,751,764 - 4,852,395 (-)NCBIChiLan1.0ChiLan1.0
GALK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21638,395,302 - 38,570,415 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11542,579,383 - 42,754,295 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01528,103,719 - 28,278,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11546,426,500 - 46,601,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1546,440,759 - 46,600,440 (+)Ensemblpanpan1.1panPan2
GALK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13015,365,659 - 15,494,681 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3015,365,690 - 15,494,307 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3015,289,459 - 15,419,903 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03015,501,612 - 15,638,828 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3015,501,581 - 15,752,197 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13015,425,107 - 15,562,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03015,546,581 - 15,677,191 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03015,652,501 - 15,781,917 (+)NCBIUU_Cfam_GSD_1.0
Galk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864093,589,122 - 93,724,080 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647111,437,384 - 11,572,237 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647111,448,689 - 11,572,102 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,369,545 - 122,542,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,370,616 - 122,542,287 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21136,147,563 - 136,319,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12633,973,843 - 34,136,345 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2633,969,657 - 34,122,115 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048106,992,233 - 107,155,570 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Galk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473110,533,174 - 10,642,836 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473110,533,443 - 10,642,561 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Galk2
3813 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1063
Count of miRNA genes:610
Interacting mature miRNAs:724
Transcripts:ENSMUST00000028636, ENSMUST00000094604, ENSMUST00000110454, ENSMUST00000125084, ENSMUST00000131643, ENSMUST00000134337, ENSMUST00000134798, ENSMUST00000135782, ENSMUST00000140873
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302174Dssc2_mdextran sodium sulfate induced colitis QTL2 (mouse)Not determined224224632148700377Mouse
4141854T2dm2sa_mtype 2 diabetes mellitus 2 in SMXA RI mice (mouse)Not determined229307947148374934Mouse
1301344Lith1_mlithogenic gene 1 (mouse)Not determined245347635145312647Mouse
13824983Vclq1_mcurvilinear velocity QTL 1 (mouse)261830344136841920Mouse
5491197Mobq5_mmultigenic obesity QTL 5 (mouse)Not determined265269746162518926Mouse
11528549Sluc31_msusceptibility to lung cancer 31 (mouse)274524117129213005Mouse
4141155Plast2b_mplasma plant sterol 2b (mouse)Not determined284013198148522175Mouse
10412082Hylaq1_mHyperlocomotor activity related QTL 1 (mouse)Not determined284013198148667470Mouse
5491196Mobq6_mmultigenic obesity QTL 6 (mouse)Not determined285724269180896594Mouse
1301909Smdq2_msegregation of mitochondrial DNA QTL 2 (mouse)Not determined292778465126778607Mouse
27226761Feml18_mfemur length 18, 16 week (mouse)294230345154241920Mouse
11049569Lmr28d_mleishmaniasis resistance 28d (mouse)297123370131123532Mouse
11049568Lmr28c_mleishmaniasis resistance 28c (mouse)297123370131123532Mouse
12904935Edlmmq2_mextensor digitorum longus muscle mass QTL 2 (mouse)297210364131210364Mouse
12904954Gmmq2_mgastrocnemius muscle mass QTL 2 (mouse)297210364131210364Mouse
4141802Ignpq1_mIgA nephropathy QTL 1 (mouse)Not determined2100824060134824269Mouse
1302203Gvhd3_mgraft-versus host disease 3 (mouse)Not determined2100942930134943090Mouse
1301330Tbbmd2_mtotal body bone mineral density 2 (mouse)Not determined2100942930134943090Mouse
1302071Fembrs1_mfemur breaking strength 1 (mouse)Not determined2100942930134943090Mouse
27226788Feml13_mfemur length 13, 10 week (mouse)2102630345159941920Mouse
11041906Lmr28a_mleishmaniasis resistance 28a (mouse)2103095716129213005Mouse
11038702Ltpr2_mLeishmania tropica response 2 (mouse)2103095716167212356Mouse
1301825Pbrgcsf1_mperipheral blood stem cell response to granulocyte colony stimulating factor 1 (mouse)Not determined2106233580140233729Mouse
10043875Bw25_mbody weight QTL 25 (mouse)Not determined2107255676141255676Mouse
1301087Bbaa15_mB.burgdorferi-associated arthritis 15 (mouse)Not determined2110489658144489807Mouse
10045885Cplaq15_mcircadian period of locomotor activity 15 (mouse)Not determined2110916118154354667Mouse
1558990Skmw9_mskeletal muscle weight 9 (mouse)Not determined2111173704145173821Mouse
1300793Pcfm2_mperiosteal circumference and femur length 2 (mouse)Not determined2111173704145173821Mouse
1301905Lgth2_mbody length 2 (mouse)Not determined2111173704145173821Mouse
1301755Hrq1_mheart rate quantitative locus 1 (mouse)Not determined2111173704145173821Mouse
1301201Chab1_mcholesterol absorption 1 (mouse)Not determined2111551028145551163Mouse
1302033Nsv1_mNeuroadapted Sindbis viral RNA level 1 (mouse)Not determined2111623386145623526Mouse
1300798Actre3_mactivity response to ethanol 3 (mouse)Not determined2112024987128173821Mouse
1301415Actre4_mactivity response to ethanol 4 (mouse)Not determined2112024987128173821Mouse
11039520Ltpr2h_mLeishmania tropica response 2h (mouse)2112212746146213005Mouse
11038699Ltpr2b_mLeishmania tropica response 2b (mouse)2112212746146213005Mouse
11038700Ltpr2a_mLeishmania tropica response 2a (mouse)2112212746146213005Mouse
1301029T2dm3_mtype 2 diabetes mellitus 3 (mouse)Not determined2114288075132714157Mouse
11039521Ltpr2g_mLeishmania tropica response 2g (mouse)2115212857149212994Mouse
11038696Ltpr2f_mLeishmania tropica response 2f (mouse)2115212857149212994Mouse
1301295Prdt1_mprion disease incubation time 1 (mouse)Not determined2116077623150077741Mouse
1558881Ses7_msalmonella enteritidis susceptibility 7 (mouse)Not determined2116306330150306474Mouse
1301618Bglu1_mblood glucose level 1 (mouse)Not determined2117942930174324863Mouse
12910795Pwbwq5_mpost-weaning body weight QTL 5 (mouse)2118589253160611165Mouse
12910799Pwgrq2_mpre-weaning growth rate QTL 2 (mouse)2118589253160611165Mouse
12910812Pwgrq1_mpre-weaning growth rate QTL 1 (mouse)2118589253160611165Mouse
12910814Pwbwq1_mpre-weaning body weight QTL 1 (mouse)2118589253160611165Mouse
1300712El2_mepilepsy 2 (mouse)Not determined2122207146142532135Mouse
1301294Hrtfm5_mheart failure modifier 5 (mouse)Not determined2122883015156883131Mouse
1301066Otx2m2_morthodenticle homolog 2 (Drosophila) modifier 2 (mouse)Not determined2123231973148700377Mouse
1301822Pgia2_mproteoglycan induced arthritis 2 (mouse)Not determined2123937311157937424Mouse
27226749Femd10_mfemur midshaft diameter 10, 16 week (mouse)2124441920168241920Mouse

Markers in Region
32.MHAa42g8.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382125,926,858 - 125,927,049UniSTSGRCm38
MGSCv372125,752,594 - 125,752,785UniSTSGRCm37
Celera2127,169,532 - 127,169,723UniSTS
Cytogenetic Map2F1UniSTS
Whitehead/MRC_RH21570.94UniSTS
AI327030  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm382125,983,292 - 125,983,371UniSTSGRCm38
MGSCv372125,809,028 - 125,809,107UniSTSGRCm37
Celera2127,226,660 - 127,226,739UniSTS
Cytogenetic Map2F1UniSTS
Whitehead/MRC_RH21570.77UniSTS
Galk2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map2F1UniSTS
cM Map2 UniSTS
AFMa066ya9  
Mouse AssemblyChrPosition (strand)SourceJBrowse
MGSCv372125,741,837 - 125,742,200UniSTSGRCm37
MGSCv37498,536,293 - 98,536,707UniSTSGRCm37
Celera497,229,800 - 97,230,214UniSTS
Celera2127,158,867 - 127,159,230UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001291002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_175154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500153 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006500154 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011239772 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252059 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030252060 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK012757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK053002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK082521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK152851 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK154762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK171939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK176923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK179543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK187716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK189714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK191983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK194301 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK209145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL844580 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL845292 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC079843 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU698705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX293543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000028636   ⟹   ENSMUSP00000028636
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,701,054 - 125,826,219 (+)Ensembl
GRCm38.p6 Ensembl2125,859,134 - 125,984,299 (+)Ensembl
RefSeq Acc Id: ENSMUST00000094604   ⟹   ENSMUSP00000092186
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,708,027 - 125,825,507 (+)Ensembl
GRCm38.p6 Ensembl2125,866,107 - 125,983,587 (+)Ensembl
RefSeq Acc Id: ENSMUST00000110454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,708,188 - 125,789,270 (+)Ensembl
GRCm38.p6 Ensembl2125,866,268 - 125,947,350 (+)Ensembl
RefSeq Acc Id: ENSMUST00000125084   ⟹   ENSMUSP00000119902
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,701,068 - 125,735,351 (+)Ensembl
GRCm38.p6 Ensembl2125,859,148 - 125,893,431 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131643   ⟹   ENSMUSP00000121752
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,708,174 - 125,771,546 (+)Ensembl
GRCm38.p6 Ensembl2125,866,254 - 125,929,626 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134337   ⟹   ENSMUSP00000120728
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,708,027 - 125,771,490 (+)Ensembl
GRCm38.p6 Ensembl2125,866,107 - 125,929,570 (+)Ensembl
RefSeq Acc Id: ENSMUST00000134798   ⟹   ENSMUSP00000118930
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,708,170 - 125,738,573 (+)Ensembl
GRCm38.p6 Ensembl2125,866,250 - 125,896,653 (+)Ensembl
RefSeq Acc Id: ENSMUST00000135782
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,701,029 - 125,702,207 (+)Ensembl
GRCm38.p6 Ensembl2125,859,109 - 125,860,287 (+)Ensembl
RefSeq Acc Id: ENSMUST00000140873
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl2125,708,163 - 125,753,364 (+)Ensembl
GRCm38.p6 Ensembl2125,866,243 - 125,911,444 (+)Ensembl
RefSeq Acc Id: NM_001291002   ⟹   NP_001277931
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,708,143 - 125,826,218 (+)NCBI
GRCm382125,866,223 - 125,984,298 (+)NCBI
Celera2127,103,131 - 127,227,668 (+)NCBI
Sequence:
RefSeq Acc Id: NM_175154   ⟹   NP_780363
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,701,029 - 125,826,218 (+)NCBI
GRCm382125,859,109 - 125,984,298 (+)NCBI
MGSCv372125,684,954 - 125,810,034 (+)RGD
Celera2127,103,131 - 127,227,668 (+)NCBI
cM Map2 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006500153   ⟹   XP_006500216
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,701,180 - 125,825,507 (+)NCBI
GRCm382125,859,243 - 125,983,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006500154   ⟹   XP_006500217
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,706,926 - 125,825,507 (+)NCBI
GRCm382125,865,755 - 125,983,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239770   ⟹   XP_011238072
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,708,136 - 125,825,507 (+)NCBI
GRCm382125,866,219 - 125,983,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011239772   ⟹   XP_011238074
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,708,140 - 125,825,507 (+)NCBI
GRCm382125,866,220 - 125,983,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252059   ⟹   XP_030107919
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,710,773 - 125,825,507 (+)NCBI
GRCm382125,868,853 - 125,983,587 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030252060   ⟹   XP_030107920
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm392125,701,066 - 125,825,507 (+)NCBI
GRCm382125,859,146 - 125,983,587 (+)NCBI
Sequence:
RefSeq Acc Id: NP_780363   ⟸   NM_175154
- Peptide Label: isoform b
- UniProtKB: Q8BUU7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500216   ⟸   XM_006500153
- Peptide Label: isoform X1
- UniProtKB: Q3U728 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006500217   ⟸   XM_006500154
- Peptide Label: isoform X2
- UniProtKB: Q8BWB2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001277931   ⟸   NM_001291002
- Peptide Label: isoform a
- UniProtKB: Q68FH4 (UniProtKB/Swiss-Prot),   Q3U3H5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238072   ⟸   XM_011239770
- Peptide Label: isoform X1
- UniProtKB: Q3U728 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011238074   ⟸   XM_011239772
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030107920   ⟸   XM_030252060
- Peptide Label: isoform X3
- UniProtKB: Q8BWB2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030107919   ⟸   XM_030252059
- Peptide Label: isoform X1
- UniProtKB: Q3U728 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSMUSP00000119902   ⟸   ENSMUST00000125084
RefSeq Acc Id: ENSMUSP00000028636   ⟸   ENSMUST00000028636
RefSeq Acc Id: ENSMUSP00000121752   ⟸   ENSMUST00000131643
RefSeq Acc Id: ENSMUSP00000118930   ⟸   ENSMUST00000134798
RefSeq Acc Id: ENSMUSP00000120728   ⟸   ENSMUST00000134337
RefSeq Acc Id: ENSMUSP00000092186   ⟸   ENSMUST00000094604
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q68FH4-F1-model_v2 AlphaFold Q68FH4 1-458 view protein structure

Promoters
RGD ID:6831419
Promoter ID:MM_KWN:31533
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   ES_Cell,   Kidney,   Lung,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000083530,   OTTMUST00000083532,   OTTMUST00000083533,   OTTMUST00000083534,   UC008MDF.1,   UC008MDG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv362125,691,816 - 125,692,316 (+)MPROMDB
RGD ID:6878586
Promoter ID:EPDNEW_M2744
Type:initiation region
Name:Galk2_1
Description:Mus musculus galactokinase 2 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm382125,866,260 - 125,866,320EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1917226 AgrOrtholog
Ensembl Genes ENSMUSG00000027207 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000028636 ENTREZGENE
  ENSMUST00000028636.13 UniProtKB/TrEMBL
  ENSMUST00000094604 ENTREZGENE
  ENSMUST00000094604.9 UniProtKB/Swiss-Prot
  ENSMUST00000125084.8 UniProtKB/TrEMBL
  ENSMUST00000131643.8 UniProtKB/TrEMBL
  ENSMUST00000134337.8 UniProtKB/TrEMBL
  ENSMUST00000134798.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.340 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.3170 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.70.890 UniProtKB/TrEMBL
InterPro Galactokinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Galactokinase_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GalKase_gal-bd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinase_C_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinase_C_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinase_N_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_knse_ATP-bd_CS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Mevalonate/galactokinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:69976 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1917226 ENTREZGENE
NCBI Gene 69976 ENTREZGENE
PANTHER GALACTOKINASE-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MEVALONATE KINASE/GALACTOKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam GalKase_gal_bdg UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinases_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_kinases_N UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Galk2 PhenoGen
PIRSF Galactokinase UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PRINTS GALCTOKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MEVGALKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE GALACTOKINASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  GHMP_KINASES_ATP UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54211 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF55060 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt B7ZCT3_MOUSE UniProtKB/TrEMBL
  B7ZCT4_MOUSE UniProtKB/TrEMBL
  B7ZCT5_MOUSE UniProtKB/TrEMBL
  D6RJ57_MOUSE UniProtKB/TrEMBL
  GALK2_MOUSE UniProtKB/Swiss-Prot
  Q3U3H5 ENTREZGENE, UniProtKB/TrEMBL
  Q3U728 ENTREZGENE, UniProtKB/TrEMBL
  Q68FH4 ENTREZGENE
  Q8BMX0_MOUSE UniProtKB/TrEMBL
  Q8BUU7 ENTREZGENE, UniProtKB/TrEMBL
  Q8BWB2 ENTREZGENE, UniProtKB/TrEMBL