Galk2 (galactokinase 2) - Rat Genome Database

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Gene: Galk2 (galactokinase 2) Heterocephalus glaber
Analyze
Symbol: Galk2
Name: galactokinase 2
RGD ID: 18911643
Description: ENCODES a protein that exhibits ATP binding (inferred); galactokinase activity (inferred); kinase activity (inferred); INVOLVED IN carbohydrate phosphorylation (inferred); galactose metabolic process (inferred); ASSOCIATED WITH Bloom syndrome (ortholog); colorectal cancer (ortholog); FOUND IN cytoplasm (inferred); cytosol (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: N-acetylgalactosamine kinase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473110,533,174 - 10,642,836 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473110,533,443 - 10,642,561 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
cytosol  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Galk2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473110,533,174 - 10,642,836 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473110,533,443 - 10,642,561 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2
GALK2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381549,155,774 - 49,367,740 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1549,155,656 - 49,367,869 (+)EnsemblGRCh38hg38GRCh38
GRCh371549,447,971 - 49,624,079 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361547,235,268 - 47,409,294 (+)NCBINCBI36Build 36hg18NCBI36
Build 341547,249,713 - 47,409,294NCBI
Celera1526,341,552 - 26,515,592 (+)NCBICelera
Cytogenetic Map15q21.1-q21.2NCBI
HuRef1526,280,047 - 26,453,966 (+)NCBIHuRef
CHM1_11549,566,269 - 49,740,116 (+)NCBICHM1_1
T2T-CHM13v2.01546,963,986 - 47,175,984 (+)NCBIT2T-CHM13v2.0
Galk2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392125,701,029 - 125,826,218 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2125,701,029 - 125,826,219 (+)EnsemblGRCm39 Ensembl
GRCm382125,859,109 - 125,984,298 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2125,859,109 - 125,984,299 (+)EnsemblGRCm38mm10GRCm38
MGSCv372125,684,954 - 125,810,034 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362125,550,659 - 125,675,739 (+)NCBIMGSCv36mm8
Celera2127,103,240 - 127,227,668 (+)NCBICelera
Cytogenetic Map2F1NCBI
cM Map261.76NCBI
Galk2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83133,563,524 - 133,696,423 (+)NCBIGRCr8
mRatBN7.23113,110,057 - 113,243,014 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3113,110,030 - 113,233,306 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3116,983,472 - 117,108,681 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03125,578,994 - 125,704,199 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03123,239,365 - 123,364,567 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03118,137,097 - 118,268,838 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3118,136,838 - 118,268,836 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03124,661,798 - 124,793,303 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43113,173,734 - 113,418,061 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3111,972,145 - 112,085,987 (+)NCBICelera
Cytogenetic Map3q36NCBI
Galk2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554094,751,764 - 4,860,584 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554094,751,764 - 4,852,395 (-)NCBIChiLan1.0ChiLan1.0
GALK2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21638,395,302 - 38,570,415 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11542,579,383 - 42,754,295 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01528,103,719 - 28,278,718 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11546,426,500 - 46,601,713 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1546,440,759 - 46,600,440 (+)Ensemblpanpan1.1panPan2
GALK2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13015,365,659 - 15,494,681 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3015,365,690 - 15,494,307 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3015,289,459 - 15,419,903 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03015,501,612 - 15,638,828 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3015,501,581 - 15,752,197 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13015,425,107 - 15,562,222 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03015,546,581 - 15,677,191 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03015,652,501 - 15,781,917 (+)NCBIUU_Cfam_GSD_1.0
Galk2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864093,589,122 - 93,724,080 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647111,437,384 - 11,572,237 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647111,448,689 - 11,572,102 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GALK2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1122,369,545 - 122,542,222 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11122,370,616 - 122,542,287 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21136,147,563 - 136,319,400 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GALK2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12633,973,843 - 34,136,345 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2633,969,657 - 34,122,115 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666048106,992,233 - 107,155,570 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSHGLT00000022729   ⟹   ENSHGLP00000022517
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462473110,533,174 - 10,642,836 (-)Ensembl
RefSeq Acc Id: XM_004835432   ⟹   XP_004835489
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473110,533,443 - 10,642,561 (-)NCBI
RefSeq Acc Id: XM_004835433   ⟹   XP_004835490
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462473110,533,443 - 10,618,925 (-)NCBI
Protein Sequences
Protein RefSeqs XP_004835489 (Get FASTA)   NCBI Sequence Viewer  
  XP_004835490 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSHGLP00000022517
  ENSHGLP00100055347
GenBank Protein JAO03394 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_004835489   ⟸   XM_004835432
- Peptide Label: isoform X1
- UniProtKB: A0A0P6K8W4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_004835490   ⟸   XM_004835433
- Peptide Label: isoform X2
RefSeq Acc Id: ENSHGLP00000022517   ⟸   ENSHGLT00000022729


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000016057 Ensembl, ENTREZGENE
  ENSHGLG00100017035 UniProtKB/TrEMBL
Ensembl Transcript ENSHGLT00000022729 ENTREZGENE
  ENSHGLT00100073966 UniProtKB/TrEMBL
Gene3D-CATH 1.20.1440.340 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
  3.30.70.3170 UniProtKB/TrEMBL
InterPro Galactokinase UniProtKB/TrEMBL
  Galactokinase_CS UniProtKB/TrEMBL
  GalKase_N UniProtKB/TrEMBL
  GHMP_kinase_C_dom UniProtKB/TrEMBL
  GHMP_kinase_C_sf UniProtKB/TrEMBL
  GHMP_kinase_N_dom UniProtKB/TrEMBL
  GHMP_knse_ATP-bd_CS UniProtKB/TrEMBL
  Mevalonate/galactokinase UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold UniProtKB/TrEMBL
  Ribosomal_S5_D2-typ_fold_subgr UniProtKB/TrEMBL
KEGG Report hgl:101714414 UniProtKB/TrEMBL
NCBI Gene Galk2 ENTREZGENE
PANTHER GALACTOKINASE-RELATED UniProtKB/TrEMBL
  MEVALONATE KINASE/GALACTOKINASE UniProtKB/TrEMBL
Pfam GalKase_gal_bdg UniProtKB/TrEMBL
  GHMP_kinases_C UniProtKB/TrEMBL
  GHMP_kinases_N UniProtKB/TrEMBL
PIRSF Galactokinase UniProtKB/TrEMBL
PRINTS GALCTOKINASE UniProtKB/TrEMBL
  MEVGALKINASE UniProtKB/TrEMBL
PROSITE GALACTOKINASE UniProtKB/TrEMBL
  GHMP_KINASES_ATP UniProtKB/TrEMBL
Superfamily-SCOP SSF54211 UniProtKB/TrEMBL
  SSF55060 UniProtKB/TrEMBL
UniProt A0A0P6K8W4 ENTREZGENE, UniProtKB/TrEMBL