Syndig1 (synapse differentiation inducing 1) - Rat Genome Database

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Gene: Syndig1 (synapse differentiation inducing 1) Ictidomys tridecemlineatus
Analyze
Symbol: Syndig1
Name: synapse differentiation inducing 1
RGD ID: 12492778
Description: ENCODES a protein that exhibits glutamate receptor binding (inferred); protein homodimerization activity (inferred); INVOLVED IN regulation of postsynapse assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell body (ortholog); dendritic shaft (ortholog); glutamatergic synapse (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: synapse differentiation-inducing gene protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: SpeTri2.0 - Squirrel SpeTri2.0 Assembly
Position:
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640147,745,538 - 147,938,240 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366201,165,709 - 1,359,179 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366201,165,312 - 1,359,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
Syndig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640147,745,538 - 147,938,240 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366201,165,709 - 1,359,179 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366201,165,312 - 1,359,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNDIG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382024,469,629 - 24,666,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2024,469,629 - 24,666,616 (+)EnsemblGRCh38hg38GRCh38
GRCh372024,450,265 - 24,647,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362024,397,835 - 24,595,167 (+)NCBINCBI36Build 36hg18NCBI36
Build 342024,397,834 - 24,595,167NCBI
Celera2024,524,151 - 24,721,487 (+)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2024,405,607 - 24,604,629 (+)NCBIHuRef
CHM1_12024,450,308 - 24,648,495 (+)NCBICHM1_1
T2T-CHM13v2.02024,531,610 - 24,729,659 (+)NCBIT2T-CHM13v2.0
Syndig1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392149,672,703 - 149,846,312 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2149,671,131 - 149,846,312 (+)EnsemblGRCm39 Ensembl
GRCm382149,830,783 - 150,004,392 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2149,829,211 - 150,004,392 (+)EnsemblGRCm38mm10GRCm38
MGSCv372149,656,519 - 149,830,128 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362149,522,238 - 149,695,833 (+)NCBIMGSCv36mm8
Celera2151,074,984 - 151,248,632 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.8NCBI
Syndig1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83158,491,474 - 158,695,174 (+)NCBIGRCr8
mRatBN7.23138,030,995 - 138,234,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3138,031,769 - 138,198,122 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3141,965,844 - 142,132,031 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03150,549,574 - 150,715,761 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03148,264,722 - 148,431,040 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03145,031,427 - 145,199,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3145,032,200 - 145,199,356 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03151,405,855 - 151,571,801 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43139,434,170 - 139,834,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13139,339,742 - 139,740,488 (+)NCBI
Celera3136,716,149 - 136,879,658 (+)NCBICelera
Cytogenetic Map3q41NCBI
Syndig1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,909,014 - 31,005,533 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541530,909,654 - 31,005,421 (+)NCBIChiLan1.0ChiLan1.0
SYNDIG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22125,333,573 - 25,559,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12025,330,408 - 25,563,465 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02024,402,471 - 24,629,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12024,751,062 - 24,947,280 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2024,825,380 - 24,947,370 (+)Ensemblpanpan1.1panPan2
SYNDIG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.123759,787 - 865,659 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl23685,782 - 865,359 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha23707,338 - 896,758 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.023919,502 - 1,109,045 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl23918,789 - 1,108,951 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.123819,974 - 925,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.023859,317 - 1,048,759 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.023848,398 - 1,037,785 (+)NCBIUU_Cfam_GSD_1.0
SYNDIG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,638,039 - 30,709,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,621,622 - 30,709,387 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,684,454 - 34,720,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNDIG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,532,455 - 53,682,063 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,533,174 - 53,682,056 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605092,177,743 - 92,250,156 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syndig1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624939560,106 - 661,570 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624939560,192 - 698,100 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSSTOT00000025668   ⟹   ENSSTOP00000016341
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
SpeTri2.0 EnsemblNW_0049366201,165,709 - 1,359,179 (-)Ensembl
RefSeq Acc Id: XM_005334593   ⟹   XP_005334650
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640147,745,538 - 147,938,240 (-)NCBI
SpeTri2.0NW_0049366201,165,312 - 1,359,127 (-)NCBI
Sequence:
RefSeq Acc Id: XM_040274514   ⟹   XP_040130448
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640147,745,538 - 147,937,747 (-)NCBI
RefSeq Acc Id: XM_040274515   ⟹   XP_040130449
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640147,745,538 - 147,938,236 (-)NCBI
RefSeq Acc Id: XM_040274516   ⟹   XP_040130450
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640147,745,538 - 147,938,061 (-)NCBI
RefSeq Acc Id: XM_040274517   ⟹   XP_040130451
Type: CODING
Position:
Squirrel AssemblyChrPosition (strand)Source
HiC_Itri_2NW_024408640147,807,640 - 147,938,240 (-)NCBI
Protein Sequences
Protein RefSeqs XP_005334650 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130448 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130449 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130450 (Get FASTA)   NCBI Sequence Viewer  
  XP_040130451 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSTOP00000016341.1
GenBank Protein KAG3262739 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_005334650   ⟸   XM_005334593
- Peptide Label: isoform X1
- UniProtKB: I3MW46 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_040130449   ⟸   XM_040274515
- Peptide Label: isoform X1
- UniProtKB: I3MW46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130450   ⟸   XM_040274516
- Peptide Label: isoform X1
- UniProtKB: I3MW46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130448   ⟸   XM_040274514
- Peptide Label: isoform X1
- UniProtKB: I3MW46 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_040130451   ⟸   XM_040274517
- Peptide Label: isoform X2
RefSeq Acc Id: ENSSTOP00000016341   ⟸   ENSSTOT00000025668


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSTOG00000021952 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSTOT00000025668.2 UniProtKB/TrEMBL
InterPro CD225/Dispanin_fam UniProtKB/TrEMBL
NCBI Gene Syndig1 ENTREZGENE
PANTHER SYNAPSE DIFFERENTIATION-INDUCING GENE PROTEIN 1 UniProtKB/TrEMBL
  UPF0338 PROTEIN UniProtKB/TrEMBL
Pfam CD225 UniProtKB/TrEMBL
UniProt I3MW46 ENTREZGENE, UniProtKB/TrEMBL