SYNDIG1 (synapse differentiation inducing 1) - Rat Genome Database

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Gene: SYNDIG1 (synapse differentiation inducing 1) Homo sapiens
Analyze
Symbol: SYNDIG1
Name: synapse differentiation inducing 1
RGD ID: 1321842
HGNC Page HGNC:15885
Description: Predicted to enable glutamate receptor binding activity and protein homodimerization activity. Involved in positive regulation of synapse assembly. Located in intracellular membrane-bounded organelle.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: C20orf39; dispanin subfamily C member 2; DSPC2; FLJ14220; IFITMD5; interferon induced transmembrane protein domain containing 5; synapse differentiation induced gene 1; synapse differentiation-inducing gene protein 1; TMEM90B; transmembrane protein 90B
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382024,469,629 - 24,666,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2024,469,629 - 24,666,616 (+)EnsemblGRCh38hg38GRCh38
GRCh372024,450,265 - 24,647,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362024,397,835 - 24,595,167 (+)NCBINCBI36Build 36hg18NCBI36
Build 342024,397,834 - 24,595,167NCBI
Celera2024,524,151 - 24,721,487 (+)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2024,405,607 - 24,604,629 (+)NCBIHuRef
CHM1_12024,450,308 - 24,648,495 (+)NCBICHM1_1
T2T-CHM13v2.02024,531,610 - 24,729,659 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11780052   PMID:12477932   PMID:14702039   PMID:15489334   PMID:16169070   PMID:16344560   PMID:17207965   PMID:20152115   PMID:20379614   PMID:21873635   PMID:22363774   PMID:25416956  
PMID:26186194   PMID:32296183   PMID:33961781  


Genomics

Comparative Map Data
SYNDIG1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382024,469,629 - 24,666,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2024,469,629 - 24,666,616 (+)EnsemblGRCh38hg38GRCh38
GRCh372024,450,265 - 24,647,252 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362024,397,835 - 24,595,167 (+)NCBINCBI36Build 36hg18NCBI36
Build 342024,397,834 - 24,595,167NCBI
Celera2024,524,151 - 24,721,487 (+)NCBICelera
Cytogenetic Map20p11.21NCBI
HuRef2024,405,607 - 24,604,629 (+)NCBIHuRef
CHM1_12024,450,308 - 24,648,495 (+)NCBICHM1_1
T2T-CHM13v2.02024,531,610 - 24,729,659 (+)NCBIT2T-CHM13v2.0
Syndig1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392149,672,703 - 149,846,312 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2149,671,131 - 149,846,312 (+)EnsemblGRCm39 Ensembl
GRCm382149,830,783 - 150,004,392 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2149,829,211 - 150,004,392 (+)EnsemblGRCm38mm10GRCm38
MGSCv372149,656,519 - 149,830,128 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362149,522,238 - 149,695,833 (+)NCBIMGSCv36mm8
Celera2151,074,984 - 151,248,632 (+)NCBICelera
Cytogenetic Map2G3NCBI
cM Map273.8NCBI
Syndig1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83158,491,474 - 158,695,174 (+)NCBIGRCr8
mRatBN7.23138,030,995 - 138,234,646 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3138,031,769 - 138,198,122 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3141,965,844 - 142,132,031 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03150,549,574 - 150,715,761 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03148,264,722 - 148,431,040 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03145,031,427 - 145,199,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3145,032,200 - 145,199,356 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03151,405,855 - 151,571,801 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43139,434,170 - 139,834,916 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13139,339,742 - 139,740,488 (+)NCBI
Celera3136,716,149 - 136,879,658 (+)NCBICelera
Cytogenetic Map3q41NCBI
Syndig1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541530,909,014 - 31,005,533 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541530,909,654 - 31,005,421 (+)NCBIChiLan1.0ChiLan1.0
SYNDIG1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22125,333,573 - 25,559,619 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12025,330,408 - 25,563,465 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02024,402,471 - 24,629,365 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12024,751,062 - 24,947,280 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2024,825,380 - 24,947,370 (+)Ensemblpanpan1.1panPan2
SYNDIG1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.123759,787 - 865,659 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl23685,782 - 865,359 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha23707,338 - 896,758 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.023919,502 - 1,109,045 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl23918,789 - 1,108,951 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.123819,974 - 925,587 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.023859,317 - 1,048,759 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.023848,398 - 1,037,785 (+)NCBIUU_Cfam_GSD_1.0
Syndig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640147,745,538 - 147,938,240 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366201,165,709 - 1,359,179 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366201,165,312 - 1,359,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SYNDIG1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1730,638,039 - 30,709,382 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11730,621,622 - 30,709,387 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21734,684,454 - 34,720,447 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SYNDIG1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1253,532,455 - 53,682,063 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl253,533,174 - 53,682,056 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605092,177,743 - 92,250,156 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Syndig1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624939560,106 - 661,570 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624939560,192 - 698,100 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SYNDIG1
19 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 20p13-11.21(chr20:89939-25697564)x3 copy number gain See cases [RCV000051227] Chr20:89939..25697564 [GRCh38]
Chr20:70580..25678200 [GRCh37]
Chr20:18580..25626200 [NCBI36]
Chr20:20p13-11.21
pathogenic
GRCh38/hg38 20p12.2-q12(chr20:9811433-39316956)x3 copy number gain See cases [RCV000052999] Chr20:9811433..39316956 [GRCh38]
Chr20:9792081..37945599 [GRCh37]
Chr20:9740081..37379013 [NCBI36]
Chr20:20p12.2-q12
pathogenic
GRCh38/hg38 20p11.22-q11.1(chr20:22061586-30285812)x3 copy number gain See cases [RCV000053000] Chr20:22061586..30285812 [GRCh38]
Chr20:22042224..29520488 [GRCh37]
Chr20:21990224..28134149 [NCBI36]
Chr20:20p11.22-q11.1
pathogenic
GRCh38/hg38 20p11.21(chr20:23455796-24880833)x3 copy number gain See cases [RCV000053001] Chr20:23455796..24880833 [GRCh38]
Chr20:23436433..24861469 [GRCh37]
Chr20:23384433..24809469 [NCBI36]
Chr20:20p11.21
pathogenic
NM_024893.2(SYNDIG1):c.307G>A (p.Gly103Arg) single nucleotide variant Malignant melanoma [RCV000072553] Chr20:24543404 [GRCh38]
Chr20:24524040 [GRCh37]
Chr20:24472040 [NCBI36]
Chr20:20p11.21
not provided
NM_024893.2(SYNDIG1):c.-78-10155T>G single nucleotide variant Lung cancer [RCV000101515] Chr20:24532865 [GRCh38]
Chr20:24513501 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.2(SYNDIG1):c.-78-3787T>C single nucleotide variant Lung cancer [RCV000101516] Chr20:24539233 [GRCh38]
Chr20:24519869 [GRCh37]
Chr20:20p11.21
uncertain significance
GRCh38/hg38 20p13-q11.1(chr20:80106-30227427)x3 copy number gain See cases [RCV000133996] Chr20:80106..30227427 [GRCh38]
Chr20:60747..29462103 [GRCh37]
Chr20:8747..28075764 [NCBI36]
Chr20:20p13-q11.1
pathogenic
GRCh38/hg38 20p13-q13.33(chr20:99557-64277321)x3 copy number gain See cases [RCV000135859] Chr20:99557..64277321 [GRCh38]
Chr20:80198..62908674 [GRCh37]
Chr20:28198..62379118 [NCBI36]
Chr20:20p13-q13.33
pathogenic
GRCh38/hg38 20p13-11.1(chr20:80927-26324843)x3 copy number gain See cases [RCV000142017] Chr20:80927..26324843 [GRCh38]
Chr20:61568..26305479 [GRCh37]
Chr20:9568..26253479 [NCBI36]
Chr20:20p13-11.1
pathogenic
GRCh37/hg19 20p13-11.1(chr20:80198-26075841)x3 copy number gain See cases [RCV000239954] Chr20:80198..26075841 [GRCh37]
Chr20:20p13-11.1
pathogenic
GRCh37/hg19 20p12.1-q11.21(chr20:17705775-31600738)x3 copy number gain See cases [RCV000240436] Chr20:17705775..31600738 [GRCh37]
Chr20:20p12.1-q11.21
pathogenic
GRCh37/hg19 20p11.21-q11.21(chr20:24162775-31820857)x3 copy number gain See cases [RCV000448977] Chr20:24162775..31820857 [GRCh37]
Chr20:20p11.21-q11.21
likely pathogenic
GRCh37/hg19 20p13-q11.21(chr20:80198-26208081)x3 copy number gain not provided [RCV000487461] Chr20:80198..26208081 [GRCh37]
Chr20:20p13-q11.21
pathogenic
GRCh37/hg19 20p11.23-11.1(chr20:18500917-25847320)x1 copy number loss See cases [RCV000510621] Chr20:18500917..25847320 [GRCh37]
Chr20:20p11.23-11.1
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555)x3 copy number gain See cases [RCV000510832] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:61569-62915555) copy number gain See cases [RCV000512450] Chr20:61569..62915555 [GRCh37]
Chr20:20p13-q13.33
pathogenic
Single allele duplication not provided [RCV000677978] Chr20:17705775..31600738 [GRCh37]
Chr20:20p12.1-q11.21
pathogenic
GRCh37/hg19 20p11.21(chr20:23884744-24530547)x1 copy number loss not provided [RCV000684121] Chr20:23884744..24530547 [GRCh37]
Chr20:20p11.21
likely benign
GRCh37/hg19 20p13-q13.33(chr20:63244-62948788)x3 copy number gain not provided [RCV000741058] Chr20:63244..62948788 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62961294)x3 copy number gain not provided [RCV000741059] Chr20:63244..62961294 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20p13-q13.33(chr20:63244-62912463)x3 copy number gain not provided [RCV000741057] Chr20:63244..62912463 [GRCh37]
Chr20:20p13-q13.33
pathogenic
GRCh37/hg19 20p11.21(chr20:24079491-24681352)x3 copy number gain not provided [RCV001007087] Chr20:24079491..24681352 [GRCh37]
Chr20:20p11.21
uncertain significance
GRCh37/hg19 20p11.21(chr20:24232978-25520939)x3 copy number gain not provided [RCV000847453] Chr20:24232978..25520939 [GRCh37]
Chr20:20p11.21
uncertain significance
GRCh37/hg19 20p11.21(chr20:24365369-24488368)x1 copy number loss not provided [RCV001007088] Chr20:24365369..24488368 [GRCh37]
Chr20:20p11.21
likely benign
GRCh37/hg19 20p13-11.1(chr20:61568-26305479)x3 copy number gain not provided [RCV001007068] Chr20:61568..26305479 [GRCh37]
Chr20:20p13-11.1
pathogenic
NM_024893.2(SYNDIG1):c.-524C>T single nucleotide variant not provided [RCV003431281] Chr20:24469308 [GRCh38]
Chr20:24449944 [GRCh37]
Chr20:20p11.21
likely benign
GRCh37/hg19 20p11.23-q11.21(chr20:19750804-30479077)x3 copy number gain not provided [RCV001258738] Chr20:19750804..30479077 [GRCh37]
Chr20:20p11.23-q11.21
likely pathogenic
GRCh37/hg19 20p11.21-q11.21(chr20:24162775-31820857) copy number gain not specified [RCV002052707] Chr20:24162775..31820857 [GRCh37]
Chr20:20p11.21-q11.21
likely pathogenic
GRCh37/hg19 20p11.23-q11.22(chr20:18665879-33903216)x3 copy number gain not provided [RCV001829151] Chr20:18665879..33903216 [GRCh37]
Chr20:20p11.23-q11.22
likely pathogenic
GRCh37/hg19 20p11.21(chr20:23142478-24824349)x3 copy number gain not provided [RCV002474920] Chr20:23142478..24824349 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.595G>A (p.Ala199Thr) single nucleotide variant Inborn genetic diseases [RCV002776940] Chr20:24584970 [GRCh38]
Chr20:24565606 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.582G>C (p.Trp194Cys) single nucleotide variant Inborn genetic diseases [RCV002865596] Chr20:24584957 [GRCh38]
Chr20:24565593 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.764A>G (p.Asn255Ser) single nucleotide variant Inborn genetic diseases [RCV002818530] Chr20:24665491 [GRCh38]
Chr20:24646127 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.6T>G (p.Asp2Glu) single nucleotide variant Inborn genetic diseases [RCV002951914] Chr20:24543103 [GRCh38]
Chr20:24523739 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.226C>G (p.Pro76Ala) single nucleotide variant Inborn genetic diseases [RCV002641039] Chr20:24543323 [GRCh38]
Chr20:24523959 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.206C>T (p.Pro69Leu) single nucleotide variant Inborn genetic diseases [RCV002767845] Chr20:24543303 [GRCh38]
Chr20:24523939 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.637A>C (p.Lys213Gln) single nucleotide variant Inborn genetic diseases [RCV002921475] Chr20:24665364 [GRCh38]
Chr20:24646000 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.92T>C (p.Leu31Ser) single nucleotide variant Inborn genetic diseases [RCV003209725] Chr20:24543189 [GRCh38]
Chr20:24523825 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.524T>C (p.Met175Thr) single nucleotide variant Inborn genetic diseases [RCV003213339] Chr20:24584899 [GRCh38]
Chr20:24565535 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.281A>G (p.Tyr94Cys) single nucleotide variant Inborn genetic diseases [RCV003197309] Chr20:24543378 [GRCh38]
Chr20:24524014 [GRCh37]
Chr20:20p11.21
uncertain significance
NM_024893.3(SYNDIG1):c.536G>A (p.Arg179Gln) single nucleotide variant Inborn genetic diseases [RCV003359967] Chr20:24584911 [GRCh38]
Chr20:24565547 [GRCh37]
Chr20:20p11.21
uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:679
Count of miRNA genes:536
Interacting mature miRNAs:576
Transcripts:ENST00000376862, ENST00000482637
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
D20S844  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,448,342 - 24,448,543UniSTSGRCh37
Build 362024,396,342 - 24,396,543RGDNCBI36
Celera2024,522,658 - 24,522,859RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,404,104 - 24,404,315UniSTS
Marshfield Genetic Map2049.71RGD
Marshfield Genetic Map2049.71UniSTS
Genethon Genetic Map2049.2UniSTS
TNG Radiation Hybrid Map2013032.0UniSTS
Whitehead-YAC Contig Map20 UniSTS
D20S486  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,635,134 - 24,635,369UniSTSGRCh37
Build 362024,583,134 - 24,583,369RGDNCBI36
Celera2024,709,455 - 24,709,690RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,592,455 - 24,592,694UniSTS
Marshfield Genetic Map2049.22UniSTS
Marshfield Genetic Map2049.22RGD
Whitehead-YAC Contig Map20 UniSTS
D20S462  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,601,986 - 24,602,195UniSTSGRCh37
Build 362024,549,986 - 24,550,195RGDNCBI36
Celera2024,676,306 - 24,676,515RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,559,313 - 24,559,522UniSTS
Whitehead-RH Map20117.3UniSTS
Whitehead-YAC Contig Map20 UniSTS
NCBI RH Map20191.0UniSTS
RH98971  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,545,078 - 24,545,232UniSTSGRCh37
Build 362024,493,078 - 24,493,232RGDNCBI36
Celera2024,619,406 - 24,619,560RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,502,420 - 24,502,574UniSTS
GeneMap99-GB4 RH Map20128.21UniSTS
RH121314  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,589,848 - 24,590,121UniSTSGRCh37
Build 362024,537,848 - 24,538,121RGDNCBI36
Celera2024,664,168 - 24,664,441RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,547,175 - 24,547,448UniSTS
SHGC-142801  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,525,522 - 24,525,820UniSTSGRCh37
Build 362024,473,522 - 24,473,820RGDNCBI36
Celera2024,599,847 - 24,600,145RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,482,877 - 24,483,175UniSTS
TNG Radiation Hybrid Map2013063.0UniSTS
D20S558E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,646,996 - 24,647,112UniSTSGRCh37
Build 362024,594,996 - 24,595,112RGDNCBI36
Celera2024,721,316 - 24,721,432RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,604,372 - 24,604,488UniSTS
GeneMap99-GB4 RH Map20126.96UniSTS
NCBI RH Map20205.4UniSTS
D20S1035  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,646,992 - 24,647,199UniSTSGRCh37
Build 362024,594,992 - 24,595,199RGDNCBI36
Celera2024,721,312 - 24,721,519RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,604,368 - 24,604,575UniSTS
GeneMap99-GB4 RH Map20125.69UniSTS
Whitehead-YAC Contig Map20 UniSTS
NCBI RH Map20207.2UniSTS
RH48635  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,549,552 - 24,549,673UniSTSGRCh37
Build 362024,497,552 - 24,497,673RGDNCBI36
Celera2024,623,880 - 24,624,001RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,506,888 - 24,507,009UniSTS
GeneMap99-GB4 RH Map20128.43UniSTS
NCBI RH Map20199.4UniSTS
D20S754  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,626,378 - 24,626,627UniSTSGRCh37
Build 362024,574,378 - 24,574,627RGDNCBI36
Celera2024,700,698 - 24,700,947RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,583,698 - 24,583,947UniSTS
Whitehead-RH Map20110.9UniSTS
Whitehead-YAC Contig Map20 UniSTS
NCBI RH Map20207.2UniSTS
STS-AA019613  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,523,667 - 24,523,869UniSTSGRCh37
Build 362024,471,667 - 24,471,869RGDNCBI36
Celera2024,597,992 - 24,598,194RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,481,022 - 24,481,224UniSTS
GeneMap99-GB4 RH Map20125.26UniSTS
D20S954  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,615,036 - 24,615,185UniSTSGRCh37
Build 362024,563,036 - 24,563,185RGDNCBI36
Celera2024,689,356 - 24,689,505RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,572,364 - 24,572,513UniSTS
GeneMap99-GB4 RH Map20126.96UniSTS
Whitehead-RH Map20111.0UniSTS
Whitehead-YAC Contig Map20 UniSTS
NCBI RH Map20205.4UniSTS
G69455  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh372024,578,239 - 24,578,476UniSTSGRCh37
Build 362024,526,239 - 24,526,476RGDNCBI36
Celera2024,652,558 - 24,652,795RGD
Cytogenetic Map20p11.21UniSTS
HuRef2024,535,566 - 24,535,803UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system visual system adipose tissue appendage entire extraembryonic component
High
Medium 18 1088 288 1 18 2 805 230 2509 60 159 311 11 766
Low 1365 1122 792 90 456 29 1456 642 1046 269 1113 977 66 648 723 2
Below cutoff 932 475 447 342 563 242 1862 1162 153 61 118 181 104 1 538 1155 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001323606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323607 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_024893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_147606 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529347 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529353 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529354 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011529358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028064 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028068 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017028069 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047440496 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047440497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047440498 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047440499 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047440500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324015 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324023 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324024 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324026 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054324034 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_937144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AK024282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL034426 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL049594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL157413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX883820 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC030637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068258 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CR457325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB306704 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENST00000376862   ⟹   ENSP00000366058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2024,469,629 - 24,666,616 (+)Ensembl
RefSeq Acc Id: ENST00000482637
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl2024,584,902 - 24,597,153 (+)Ensembl
RefSeq Acc Id: NM_001323606   ⟹   NP_001310535
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,666,616 (+)NCBI
CHM1_12024,450,308 - 24,648,495 (+)NCBI
T2T-CHM13v2.02024,531,610 - 24,729,659 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001323607   ⟹   NP_001310536
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,666,616 (+)NCBI
CHM1_12024,450,915 - 24,648,495 (+)NCBI
T2T-CHM13v2.02024,531,854 - 24,729,659 (+)NCBI
Sequence:
RefSeq Acc Id: NM_024893   ⟹   NP_079169
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,666,616 (+)NCBI
GRCh372024,449,835 - 24,647,253 (+)NCBI
Build 362024,397,835 - 24,595,167 (+)NCBI Archive
Celera2024,524,151 - 24,721,487 (+)RGD
HuRef2024,405,607 - 24,604,629 (+)NCBI
CHM1_12024,450,308 - 24,648,495 (+)NCBI
T2T-CHM13v2.02024,531,610 - 24,729,659 (+)NCBI
Sequence:
RefSeq Acc Id: NR_147606
RefSeq Status: REVIEWED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,666,616 (+)NCBI
T2T-CHM13v2.02024,531,854 - 24,729,659 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529347   ⟹   XP_011527649
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,634,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529348   ⟹   XP_011527650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,634,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529350   ⟹   XP_011527652
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,634,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529351   ⟹   XP_011527653
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,634,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529353   ⟹   XP_011527655
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,634,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529354   ⟹   XP_011527656
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,634,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529356   ⟹   XP_011527658
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,660,267 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011529358   ⟹   XP_011527660
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,646,662 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017028064   ⟹   XP_016883553
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,488,664 - 24,634,588 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017028065   ⟹   XP_016883554
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,666,616 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017028066   ⟹   XP_016883555
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,666,616 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017028067   ⟹   XP_016883556
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,666,616 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017028068   ⟹   XP_016883557
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,488,670 - 24,666,616 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017028069   ⟹   XP_016883558
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,548,629 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047440496   ⟹   XP_047296452
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,634,588 (+)NCBI
RefSeq Acc Id: XM_047440497   ⟹   XP_047296453
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,634,588 (+)NCBI
RefSeq Acc Id: XM_047440498   ⟹   XP_047296454
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,634,588 (+)NCBI
RefSeq Acc Id: XM_047440499   ⟹   XP_047296455
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,629 - 24,663,067 (+)NCBI
RefSeq Acc Id: XM_047440500   ⟹   XP_047296456
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,873 - 24,548,629 (+)NCBI
RefSeq Acc Id: XM_054324015   ⟹   XP_054179990
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324016   ⟹   XP_054179991
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324017   ⟹   XP_054179992
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324018   ⟹   XP_054179993
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324019   ⟹   XP_054179994
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324020   ⟹   XP_054179995
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324021   ⟹   XP_054179996
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324022   ⟹   XP_054179997
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324023   ⟹   XP_054179998
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,906 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324024   ⟹   XP_054179999
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324025   ⟹   XP_054180000
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,550,647 - 24,697,409 (+)NCBI
RefSeq Acc Id: XM_054324026   ⟹   XP_054180001
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,729,659 (+)NCBI
RefSeq Acc Id: XM_054324027   ⟹   XP_054180002
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,729,659 (+)NCBI
RefSeq Acc Id: XM_054324028   ⟹   XP_054180003
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,550,653 - 24,729,659 (+)NCBI
RefSeq Acc Id: XM_054324029   ⟹   XP_054180004
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,904 - 24,729,659 (+)NCBI
RefSeq Acc Id: XM_054324030   ⟹   XP_054180005
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,726,110 (+)NCBI
RefSeq Acc Id: XM_054324031   ⟹   XP_054180006
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,724,042 (+)NCBI
RefSeq Acc Id: XM_054324032   ⟹   XP_054180007
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,709,478 (+)NCBI
RefSeq Acc Id: XM_054324033   ⟹   XP_054180008
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,610 - 24,613,377 (+)NCBI
RefSeq Acc Id: XM_054324034   ⟹   XP_054180009
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.02024,531,854 - 24,613,377 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001310535 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310536 (Get FASTA)   NCBI Sequence Viewer  
  NP_079169 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527649 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527650 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527652 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527653 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527655 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527656 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527658 (Get FASTA)   NCBI Sequence Viewer  
  XP_011527660 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883553 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883554 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883555 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883556 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883557 (Get FASTA)   NCBI Sequence Viewer  
  XP_016883558 (Get FASTA)   NCBI Sequence Viewer  
  XP_047296452 (Get FASTA)   NCBI Sequence Viewer  
  XP_047296453 (Get FASTA)   NCBI Sequence Viewer  
  XP_047296454 (Get FASTA)   NCBI Sequence Viewer  
  XP_047296455 (Get FASTA)   NCBI Sequence Viewer  
  XP_047296456 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179990 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179991 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179992 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179993 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179994 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179995 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179996 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179997 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179998 (Get FASTA)   NCBI Sequence Viewer  
  XP_054179999 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180000 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180001 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180002 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180003 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180004 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180005 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180006 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180007 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180008 (Get FASTA)   NCBI Sequence Viewer  
  XP_054180009 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH30637 (Get FASTA)   NCBI Sequence Viewer  
  BAB14872 (Get FASTA)   NCBI Sequence Viewer  
  CAE92125 (Get FASTA)   NCBI Sequence Viewer  
  CAG33606 (Get FASTA)   NCBI Sequence Viewer  
  EAX10117 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000366058
  ENSP00000366058.3
GenBank Protein Q9H7V2 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_079169   ⟸   NM_024893
- UniProtKB: Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot),   Q9H7V2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011527658   ⟸   XM_011529356
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_011527660   ⟸   XM_011529358
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_011527649   ⟸   XM_011529347
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011527650   ⟸   XM_011529348
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011527652   ⟸   XM_011529350
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011527653   ⟸   XM_011529351
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011527656   ⟸   XM_011529354
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_011527655   ⟸   XM_011529353
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: NP_001310535   ⟸   NM_001323606
- UniProtKB: Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot),   Q9H7V2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001310536   ⟸   NM_001323607
- UniProtKB: Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot),   Q9H7V2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016883558   ⟸   XM_017028069
- Peptide Label: isoform X6
- Sequence:
RefSeq Acc Id: XP_016883554   ⟸   XM_017028065
- Peptide Label: isoform X2
- UniProtKB: Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot),   Q9H7V2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016883556   ⟸   XM_017028067
- Peptide Label: isoform X2
- UniProtKB: Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot),   Q9H7V2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016883555   ⟸   XM_017028066
- Peptide Label: isoform X2
- UniProtKB: Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot),   Q9H7V2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_016883553   ⟸   XM_017028064
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_016883557   ⟸   XM_017028068
- Peptide Label: isoform X2
- UniProtKB: Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot),   Q9H7V2 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSP00000366058   ⟸   ENST00000376862
RefSeq Acc Id: XP_047296455   ⟸   XM_047440499
- Peptide Label: isoform X3
RefSeq Acc Id: XP_047296452   ⟸   XM_047440496
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047296453   ⟸   XM_047440497
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047296454   ⟸   XM_047440498
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047296456   ⟸   XM_047440500
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054180005   ⟸   XM_054324030
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054180006   ⟸   XM_054324031
- Peptide Label: isoform X4
RefSeq Acc Id: XP_054180007   ⟸   XM_054324032
- Peptide Label: isoform X5
RefSeq Acc Id: XP_054179992   ⟸   XM_054324017
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179993   ⟸   XM_054324018
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179990   ⟸   XM_054324015
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179991   ⟸   XM_054324016
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054180008   ⟸   XM_054324033
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054180002   ⟸   XM_054324027
- Peptide Label: isoform X2
- UniProtKB: Q9H7V2 (UniProtKB/Swiss-Prot),   Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054180001   ⟸   XM_054324026
- Peptide Label: isoform X2
- UniProtKB: Q9H7V2 (UniProtKB/Swiss-Prot),   Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054179999   ⟸   XM_054324024
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179994   ⟸   XM_054324019
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179995   ⟸   XM_054324020
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179996   ⟸   XM_054324021
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054179997   ⟸   XM_054324022
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054180009   ⟸   XM_054324034
- Peptide Label: isoform X6
RefSeq Acc Id: XP_054180004   ⟸   XM_054324029
- Peptide Label: isoform X2
- UniProtKB: Q9H7V2 (UniProtKB/Swiss-Prot),   Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054179998   ⟸   XM_054324023
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054180000   ⟸   XM_054324025
- Peptide Label: isoform X1
RefSeq Acc Id: XP_054180003   ⟸   XM_054324028
- Peptide Label: isoform X2
- UniProtKB: Q9H7V2 (UniProtKB/Swiss-Prot),   Q6IA30 (UniProtKB/Swiss-Prot),   Q9H514 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9H7V2-F1-model_v2 AlphaFold Q9H7V2 1-258 view protein structure

Promoters
RGD ID:13206555
Promoter ID:EPDNEW_H26858
Type:initiation region
Name:SYNDIG1_1
Description:synapse differentiation inducing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26859  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,469,192 - 24,469,252EPDNEW
RGD ID:13206559
Promoter ID:EPDNEW_H26859
Type:multiple initiation site
Name:SYNDIG1_2
Description:synapse differentiation inducing 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H26858  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh382024,528,954 - 24,529,014EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:15885 AgrOrtholog
COSMIC SYNDIG1 COSMIC
Ensembl Genes ENSG00000101463 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000376862 ENTREZGENE
  ENST00000376862.4 UniProtKB/Swiss-Prot
GTEx ENSG00000101463 GTEx
HGNC ID HGNC:15885 ENTREZGENE
Human Proteome Map SYNDIG1 Human Proteome Map
InterPro CD225/Dispanin_fam UniProtKB/Swiss-Prot
KEGG Report hsa:79953 UniProtKB/Swiss-Prot
NCBI Gene 79953 ENTREZGENE
OMIM 614311 OMIM
PANTHER SYNAPSE DIFFERENTIATION-INDUCING GENE PROTEIN 1 UniProtKB/Swiss-Prot
  UPF0338 PROTEIN UniProtKB/Swiss-Prot
Pfam CD225 UniProtKB/Swiss-Prot
PharmGKB PA25752 PharmGKB
UniProt Q6IA30 ENTREZGENE
  Q9H514 ENTREZGENE
  Q9H7V2 ENTREZGENE, UniProtKB/Swiss-Prot
UniProt Secondary Q6IA30 UniProtKB/Swiss-Prot
  Q9H514 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 SYNDIG1  synapse differentiation inducing 1  TMEM90B  transmembrane protein 90B  Symbol and/or name change 5135510 APPROVED