Gene: Syndig1 (synapse differentiation inducing 1) Rattus norvegicus
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Symbol: Syndig1
Name: synapse differentiation inducing 1
Description: ENCODES a protein that exhibits glutamate receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN positive regulation of synapse assembly; synaptic vesicle clustering; intracellular protein transport (ortholog); FOUND IN cell body; dendritic shaft; dendritic spine; INTERACTS WITH bisphenol A; furan; Soman
Type: protein-coding
RefSeq Status: PROVISIONAL
Also known as: dispanin subfamily C member 2; DSPC2; LOC362235; RGD1310753; similar to chromosome 20 open reading frame 39; synapse differentiation-inducing gene protein 1; Tmem90b; transmembrane protein 90B
Orthologs:
Homo sapiens (human) : SYNDIG1 (synapse differentiation inducing 1)  HGNC  AGR
Mus musculus (house mouse) : Syndig1 (synapse differentiation inducing 1)  MGI  AGR
Chinchilla lanigera (long-tailed chinchilla) : Syndig1 (synapse differentiation inducing 1)
Pan paniscus (bonobo/pygmy chimpanzee) : SYNDIG1 (synapse differentiation inducing 1)
Canis lupus familiaris (dog) : SYNDIG1 (synapse differentiation inducing 1)
Ictidomys tridecemlineatus (thirteen-lined ground squirrel) : Syndig1 (synapse differentiation inducing 1)
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Allele / Splice: Syndig1Tn(sb-T2/Bart3)2.171Mcwi  
Genetic Models: F344-Syndig1Tn(sb-T2/Bart3)2.171Mcwi
Latest Assembly: Rnor_6.0 - RGSC Genome Assembly v6.0
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03145,031,427 - 145,199,273 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.03151,405,855 - 151,571,801 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43139,434,170 - 139,834,916 (+)NCBIRGSC3.4rn4RGSC3.4
RGSC_v3.13139,339,742 - 139,740,488 (+)NCBI
Celera3136,716,149 - 136,879,658 (+)NCBICelera
Cytogenetic Map3q41NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations
Gene Ontology Annotations
References - curated
References - uncurated
RGD Disease Portals

Genomics

Comparative Map Data
QTLs in Region (Rnor_6.0)
Genetic Models
miRNA Target Status

Sequence

Nucleotide Sequences
Protein Sequences
Transcriptome

Strain Variation

Strain Sequence Variants

Additional Information

External Database Links
Nomenclature History
 
More on Syndig1
AGR Gene
NCBI Gene
Ensembl Gene
JBrowse: rn5 rn6
NCBI Genome Data Viewer

RGD Object Information
RGD ID: 1310753
Created: 2005-01-12
Species: Rattus norvegicus
Last Modified: 2017-09-26
Status: ACTIVE