SYNDIG1 (synapse differentiation inducing 1)

Gene: SYNDIG1 (synapse differentiation inducing 1) Pan paniscus

Analyze

Symbol:

SYNDIG1

Name:

synapse differentiation inducing 1

RGD ID:

11798930

Description:

ENCODES a protein that exhibits glutamate receptor binding (ortholog); protein homodimerization activity (ortholog); INVOLVED IN intracellular protein transport (ortholog); regulation of postsynapse assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cell body (ortholog); dendritic shaft (ortholog); early endosome membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

synapse differentiation-inducing gene protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	25,333,573 - 25,559,619 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	25,330,408 - 25,563,465 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	24,402,471 - 24,629,365 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	24,751,062 - 24,947,280 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	24,825,380 - 24,947,370 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

intracellular protein transport (ISO)

positive regulation of synapse assembly (IEA)

regulation of postsynapse assembly (ISO)

synaptic vesicle clustering (IEA)

Cellular Component

cell body (ISO)

cell projection (IEA)

dendrite (IEA)

dendritic shaft (ISO)

dendritic spine (IEA)

early endosome membrane (ISO)

excitatory synapse (IEA)

glutamatergic synapse (ISO)

Golgi membrane (ISO)

intracellular membrane-bounded organelle (IEA)

membrane (IEA)

plasma membrane (IEA)

postsynaptic density (ISO)

postsynaptic density membrane (IEA,ISO)

synapse (IEA)

synaptic vesicle membrane (IEA)

Molecular Function

glutamate receptor binding (ISO)

protein binding (ISO)

protein homodimerization activity (ISO)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

SYNDIG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	25,333,573 - 25,559,619 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	25,330,408 - 25,563,465 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	24,402,471 - 24,629,365 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	24,751,062 - 24,947,280 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	24,825,380 - 24,947,370 (+)	Ensembl	panpan1.1		panPan2

SYNDIG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	24,469,629 - 24,666,616 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	24,469,629 - 24,666,616 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	20	24,450,265 - 24,647,252 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	24,397,835 - 24,595,167 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	20	24,397,834 - 24,595,167	NCBI
Celera	20	24,524,151 - 24,721,487 (+)	NCBI		Celera
Cytogenetic Map	20	p11.21	NCBI
HuRef	20	24,405,607 - 24,604,629 (+)	NCBI		HuRef
CHM1_1	20	24,450,308 - 24,648,495 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	24,531,610 - 24,729,659 (+)	NCBI		T2T-CHM13v2.0

Syndig1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	149,672,703 - 149,846,312 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	149,671,131 - 149,846,312 (+)	Ensembl		GRCm39 Ensembl
GRCm38	2	149,830,783 - 150,004,392 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	149,829,211 - 150,004,392 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	149,656,519 - 149,830,128 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	149,522,238 - 149,695,833 (+)	NCBI		MGSCv36	mm8
Celera	2	151,074,984 - 151,248,632 (+)	NCBI		Celera
Cytogenetic Map	2	G3	NCBI
cM Map	2	73.8	NCBI

Syndig1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	158,491,474 - 158,695,174 (+)	NCBI		GRCr8
mRatBN7.2	3	138,030,995 - 138,234,646 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	138,031,769 - 138,198,122 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	141,965,844 - 142,132,031 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	150,549,574 - 150,715,761 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	148,264,722 - 148,431,040 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	145,031,427 - 145,199,273 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	145,032,200 - 145,199,356 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	151,405,855 - 151,571,801 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	139,434,170 - 139,834,916 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	3	139,339,742 - 139,740,488 (+)	NCBI
Celera	3	136,716,149 - 136,879,658 (+)	NCBI		Celera
Cytogenetic Map	3	q41	NCBI

Syndig1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	30,909,014 - 31,005,533 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	30,909,654 - 31,005,421 (+)	NCBI	ChiLan1.0	ChiLan1.0

SYNDIG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	23	759,787 - 865,659 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	23	685,782 - 865,359 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	23	707,338 - 896,758 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	23	919,502 - 1,109,045 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	23	918,789 - 1,108,951 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	23	819,974 - 925,587 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	23	859,317 - 1,048,759 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	23	848,398 - 1,037,785 (+)	NCBI		UU_Cfam_GSD_1.0

Syndig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	147,745,538 - 147,938,240 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936620	1,165,709 - 1,359,179 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936620	1,165,312 - 1,359,127 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SYNDIG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	30,638,039 - 30,709,382 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	17	30,621,622 - 30,709,387 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	34,684,454 - 34,720,447 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SYNDIG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	53,532,455 - 53,682,063 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	53,533,174 - 53,682,056 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666050	92,177,743 - 92,250,156 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Syndig1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624939	560,106 - 661,570 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624939	560,192 - 698,100 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003829360	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008954727	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947448	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947449	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947450	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947451	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947452	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947453	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947454	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947455	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034947456	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055104992	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055104994	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSPPAT00000037559 ⟹ ENSPPAP00000014871

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	20	24,825,380 - 24,947,370 (+)	Ensembl

RefSeq Acc Id:

XM_003829360 ⟹ XP_003829408

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	25,333,578 - 25,530,761 (+)	NCBI
NHGRI_mPanPan1	20	25,330,411 - 25,527,594 (+)	NCBI
Mhudiblu_PPA_v0	20	24,402,471 - 24,600,058 (+)	NCBI
PanPan1.1	20	24,751,062 - 24,947,280 (+)	NCBI

Sequence:

show sequence

AGACACTGGCCGCGGGCCACCATCTGGACGCGATCCCCCGCTAGGGCCTCCCTGGTCTGGGCCA
AAGTTGGTGGCCACCTTCGCGCGGGCTGCGCCCTCCTTCTCTTCCCTGCCCTCCTCCCCGGGGC
CCGCGCCCGCTGCCTCCAGCACGCGCGTCGGCAGGCTCGGCAAGCGAAGAGGAGCGGCTCGCCC
CTGAGCGCCCCTCGCCCAGCCTGCCAGCCAGGCGCGCGCGACGAGAGTCTCCCCGCACCCCTTC
CTCTCCCGGGGGCCGAGAGGGTTGGGCTCCGCCCCGGCGCCGCAGCTCCCGACTCCCCGCCGCT
CGGGCTGCCGCCGCTGCCCCGCGCCCGGCGCTCGGGGCAGCCGGGGGCGCAGGCTGAGAGCGCA
GGGCGGGGAGCGGCGTGGGGAGCAGAGCGGCGCTGAGGGGAGGGCAGAGGAGGAGAGAGCCTGG
CAGCGGAGGAGCAGAGGCGGGCGCCGCACCGCCCCGCACGCTCGCTCGCTCGGGAGACTCGCGG
GCGGCCGCTTGGGCGCACTTGCCGGGTCACCTTGTCCCGGAGGAGAAATGGCTTCCCTGAGACA
AGTGTAACCTACATTCCCAGCCCACCAGCCTGACGCCCAGCCAGGGAGAGAGTACCATGGATGG
CATCATTGAACAGAAGAGCATGCTGGTGCACAGTAAAATCAGTGATGCTGGCAAGAGGAATGGT
TTAATTAACACCAGAAACTTGATGGCCGAGAGCAGAGATGGTCTGGTGTCTGTTTACCCAGCAC
CCCAGTACCAGAGCCACCGGGTGGGGGCCAGCACAGTGCCGGCCAGCCTGGACAGCAGCAGGAG
TGAGCCGATGCAGCAGCTGCTGGACCCCAACACCCTGCAGCAGTCAGTGGAGTCCCGCTACCGG
CCCAACATCATCCTCTATTCAGAGGGCGTGCTGCGCTCCTGGGGGGACGGTGTGGCCGCCGACT
GCTGCGAGACCACCTTCATCGAGGACCGGTCGCCCACCAAAGACAGCCTCGAGTACCCGGATGG
GAAGTTCATTGACCTCTCAGCTGATGACATAAAAATCCACACCCTGTCCTATGATGTGGAGGAG
GAGGAGGAGTTCCAGGAGCTGGAGAGCGACTACTCAAGCGACACAGAGAGTGAGGACAATTTCC
TCATGATGCCCCCGCGGGACCACCTGGGCCTCAGTGTCTTCTCCATGCTCTGCTGCTTCTGGCC
TCTGGGCATCGCAGCCTTCTACTTGTCCCATGAGACCAACAAAGCCGTGGCCAAGGGGGACTTG
CACCAGGCCAGCACCAGCTCCCGGCGGGCCCTATTCCTGGCAGTGCTGTCCATCACCATTGGGA
CTGGCGTCTATGTGGGCGTGGCCGTGGCCCTCATCGCCTACCTCTCCAAGAACAACCACCTGTG
AGCTTCCTGCGAATGGAGGGGGAGCACCCGGGGCCAGGTCTGTGTGGACGTGGAGGAAGCAGGC
ATACCGCATGATGCTGTACAGTACAAATGATTGCCAAATGATGCCACGAAGCCCTGGGATTTCC
TACCCATGGATTTATTTTGTTTTTATCCTTTAATTTCATGTTCACAGCACTGTGTAGAGCACCA
GACAGACGGGCACTGCTAATCCTTCCAAAGGAAAGCTCCAAAGATCCCAGCCCGCAAGGCTGTC
TCTGGATGGATTCTGGTGGATGAATGGCAACGCGGCTCTCTGCAGCCTGCCAGTGCCCAGAGTG
CCACCGCATTAGCAATATACAAACAGTCGAAAAAAAGTGTTTATTTTTTATGGAATACGGTGCA
ATAGGCAGAGGACAAGGGACACGTCACTATTCTGTCTGTGGCCCTGCTGGAGTCCTTTGTGCCC
CCCCGAGTCCACACGCCTTCCCTGCAAGACGAGAATGGGGCTGGGAAGAAAGAGGCAACACCAC
GGCTGGCAGGAGCCCCGCTGCACTGCTCTGCAGACCCATTGGCCTGACCCTGAGAAGCAGAGCC
AGCAAAGCCCGGGACCTGCCCCTCTTTCTTTCCCTTCACACCACCCCAGCCTCAGGATGTCAAG
CCACCTCCGGAACGTGTCTACACTCCACAGCTACCCCGCAGCAATACGCACTCTTGGGACCTCG
CTGATCTAGGATGGGGAGGCAGGCCACCGCCCCTCCCAAGACTCCTCAAGAAAGAGCCCCGCGG
TTGCTCTGGAAACTCGAGGCACTGCAGCTATGGGCACTGCCTCAGCCTAAAGACACAGGGGCGC
CTCCCAATCACCGCGCTGGCGGATGCTCACCCCGTCATAAGCAGAAACTAGTGATCCTGGAAAC
GAGATGGGCCTTACTCTGTCGACTAAATGAATAGCTATTTTCTTGTCATTTTTTAAAGTGCAAC
TCTTGCTTCATGCTGCTTAAGTTACCAGATGAATGCTGAGAAATAAGTAATCACAGACATTTTA
ATACCATTTCA

hide sequence

RefSeq Acc Id:

XM_008954727 ⟹ XP_008952975

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	25,333,769 - 25,530,761 (+)	NCBI
NHGRI_mPanPan1	20	25,330,602 - 25,527,594 (+)	NCBI
Mhudiblu_PPA_v0	20	24,403,078 - 24,600,058 (+)	NCBI
PanPan1.1	20	24,751,668 - 24,947,280 (+)	NCBI

Sequence:

show sequence

GGGTCGCGGCAGGGGCCGCGAGCTGGCGGCGGGAGCTGGAGGCTGCCCTGCGCGGGCGGGTGTC
CTAGTCCTGGCTCCGCCTCGGAGCGCGCAGACCCGGCGGCGGCGTGGCGCCCGCGGAGAAATGG
CTTCCCTGAGACAAGTGTAACCTACATTCCCAGCCCACCAGCCTGACGCCCAGCCAGGGAGAGA
GTACCATGGATGGCATCATTGAACAGAAGAGCATGCTGGTGCACAGTAAAATCAGTGATGCTGG
CAAGAGGAATGGTTTAATTAACACCAGAAACTTGATGGCCGAGAGCAGAGATGGTCTGGTGTCT
GTTTACCCAGCACCCCAGTACCAGAGCCACCGGGTGGGGGCCAGCACAGTGCCGGCCAGCCTGG
ACAGCAGCAGGAGTGAGCCGATGCAGCAGCTGCTGGACCCCAACACCCTGCAGCAGTCAGTGGA
GTCCCGCTACCGGCCCAACATCATCCTCTATTCAGAGGGCGTGCTGCGCTCCTGGGGGGACGGT
GTGGCCGCCGACTGCTGCGAGACCACCTTCATCGAGGACCGGTCGCCCACCAAAGACAGCCTCG
AGTACCCGGATGGGAAGTTCATTGACCTCTCAGCTGATGACATAAAAATCCACACCCTGTCCTA
TGATGTGGAGGAGGAGGAGGAGTTCCAGGAGCTGGAGAGCGACTACTCAAGCGACACAGAGAGT
GAGGACAATTTCCTCATGATGCCCCCGCGGGACCACCTGGGCCTCAGTGTCTTCTCCATGCTCT
GCTGCTTCTGGCCTCTGGGCATCGCAGCCTTCTACTTGTCCCATGAGACCAACAAAGCCGTGGC
CAAGGGGGACTTGCACCAGGCCAGCACCAGCTCCCGGCGGGCCCTATTCCTGGCAGTGCTGTCC
ATCACCATTGGGACTGGCGTCTATGTGGGCGTGGCCGTGGCCCTCATCGCCTACCTCTCCAAGA
ACAACCACCTGTGAGCTTCCTGCGAATGGAGGGGGAGCACCCGGGGCCAGGTCTGTGTGGACGT
GGAGGAAGCAGGCATACCGCATGATGCTGTACAGTACAAATGATTGCCAAATGATGCCACGAAG
CCCTGGGATTTCCTACCCATGGATTTATTTTGTTTTTATCCTTTAATTTCATGTTCACAGCACT
GTGTAGAGCACCAGACAGACGGGCACTGCTAATCCTTCCAAAGGAAAGCTCCAAAGATCCCAGC
CCGCAAGGCTGTCTCTGGATGGATTCTGGTGGATGAATGGCAACGCGGCTCTCTGCAGCCTGCC
AGTGCCCAGAGTGCCACCGCATTAGCAATATACAAACAGTCGAAAAAAAGTGTTTATTTTTTAT
GGAATACGGTGCAATAGGCAGAGGACAAGGGACACGTCACTATTCTGTCTGTGGCCCTGCTGGA
GTCCTTTGTGCCCCCCCGAGTCCACACGCCTTCCCTGCAAGACGAGAATGGGGCTGGGAAGAAA
GAGGCAACACCACGGCTGGCAGGAGCCCCGCTGCACTGCTCTGCAGACCCATTGGCCTGACCCT
GAGAAGCAGAGCCAGCAAAGCCCGGGACCTGCCCCTCTTTCTTTCCCTTCACACCACCCCAGCC
TCAGGATGTCAAGCCACCTCCGGAACGTGTCTACACTCCACAGCTACCCCGCAGCAATACGCAC
TCTTGGGACCTCGCTGATCTAGGATGGGGAGGCAGGCCACCGCCCCTCCCAAGACTCCTCAAGA
AAGAGCCCCGCGGTTGCTCTGGAAACTCGAGGCACTGCAGCTATGGGCACTGCCTCAGCCTAAA
GACACAGGGGCGCCTCCCAATCACCGCGCTGGCGGATGCTCACCCCGTCATAAGCAGAAACTAG
TGATCCTGGAAACGAGATGGGCCTTACTCTGTCGACTAAATGAATAGCTATTTTCTTGTCATTT
TTTAAAGTGCAACTCTTGCTTCATGCTGCTTAAGTTACCAGATGAATGCTGAGAAATAAGTAAT
CACAGACATTTTAATACCATTTCA

hide sequence

RefSeq Acc Id:

XM_034947453 ⟹ XP_034803344

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	25,351,591 - 25,530,761 (+)	NCBI
NHGRI_mPanPan1	20	25,348,448 - 25,527,594 (+)	NCBI
Mhudiblu_PPA_v0	20	24,420,926 - 24,600,058 (+)	NCBI

RefSeq Acc Id:

XM_034947455 ⟹ XP_034803346

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	25,333,575 - 25,524,092 (+)	NCBI
NHGRI_mPanPan1	20	25,330,409 - 25,520,916 (+)	NCBI
Mhudiblu_PPA_v0	20	24,402,874 - 24,593,423 (+)	NCBI

RefSeq Acc Id:

XM_034947456 ⟹ XP_034803347

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	25,333,576 - 25,559,619 (+)	NCBI
NHGRI_mPanPan1	20	25,330,410 - 25,563,465 (+)	NCBI
Mhudiblu_PPA_v0	20	24,402,874 - 24,629,365 (+)	NCBI

RefSeq Acc Id:

XM_055104992 ⟹ XP_054960967

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	25,333,850 - 25,530,761 (+)	NCBI
NHGRI_mPanPan1	20	25,330,683 - 25,527,594 (+)	NCBI

RefSeq Acc Id:

XM_055104994 ⟹ XP_054960969

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	21	25,333,573 - 25,530,761 (+)	NCBI
NHGRI_mPanPan1	20	25,330,408 - 25,527,594 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_003829408	(Get FASTA)	NCBI Sequence Viewer
	XP_008952975	(Get FASTA)	NCBI Sequence Viewer
	XP_034803344	(Get FASTA)	NCBI Sequence Viewer
	XP_034803346	(Get FASTA)	NCBI Sequence Viewer
	XP_034803347	(Get FASTA)	NCBI Sequence Viewer
	XP_054960967	(Get FASTA)	NCBI Sequence Viewer
	XP_054960969	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000014871
	ENSPPAP00000014871.1

RefSeq Acc Id:	XP_003829408 ⟸ XM_003829360
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AD82 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIIEQKSMLVHSKISDAGKRNGLINTRNLMAESRDGLVSVYPAPQYQSHRVGASTVPASLDS SRSEPMQQLLDPNTLQQSVESRYRPNIILYSEGVLRSWGDGVAADCCETTFIEDRSPTKDSLEY PDGKFIDLSADDIKIHTLSYDVEEEEEFQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDLHQASTSSRRALFLAVLSITIGTGVYVGVAVALIAYLSKNN HL hide sequence

RefSeq Acc Id:	XP_008952975 ⟸ XM_008954727
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AD82 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDGIIEQKSMLVHSKISDAGKRNGLINTRNLMAESRDGLVSVYPAPQYQSHRVGASTVPASLDS SRSEPMQQLLDPNTLQQSVESRYRPNIILYSEGVLRSWGDGVAADCCETTFIEDRSPTKDSLEY PDGKFIDLSADDIKIHTLSYDVEEEEEFQELESDYSSDTESEDNFLMMPPRDHLGLSVFSMLCC FWPLGIAAFYLSHETNKAVAKGDLHQASTSSRRALFLAVLSITIGTGVYVGVAVALIAYLSKNN HL hide sequence

RefSeq Acc Id:	XP_034803347 ⟸ XM_034947456
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_034803346 ⟸ XM_034947455
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_034803344 ⟸ XM_034947453
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AD82 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSPPAP00000014871 ⟸ ENSPPAT00000037559

RefSeq Acc Id:	XP_054960969 ⟸ XM_055104994
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_054960967 ⟸ XM_055104992
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R9AD82 (UniProtKB/TrEMBL)

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000030602	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000037559.1	UniProtKB/TrEMBL
InterPro	CD225/Dispanin_fam	UniProtKB/TrEMBL
KEGG Report	pps:100992389	UniProtKB/TrEMBL
NCBI Gene	SYNDIG1	ENTREZGENE
PANTHER	SYNAPSE DIFFERENTIATION-INDUCING GENE PROTEIN 1	UniProtKB/TrEMBL
	UPF0338 PROTEIN	UniProtKB/TrEMBL
Pfam	CD225	UniProtKB/TrEMBL
UniProt	A0A2R9AD82	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar