CXCL5 (C-X-C motif chemokine ligand 5) - Rat Genome Database

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Gene: CXCL5 (C-X-C motif chemokine ligand 5) Pan paniscus
Analyze
Symbol: CXCL5
Name: C-X-C motif chemokine ligand 5
RGD ID: 11697176
Description: ENCODES a protein that exhibits chemokine activity (inferred); cytokine activity (inferred); identical protein binding (inferred); INVOLVED IN cell chemotaxis (inferred); chemotaxis (inferred); defense response (inferred); ASSOCIATED WITH adult respiratory distress syndrome (ortholog); allergic disease (ortholog); asthma (ortholog); FOUND IN extracellular region (inferred); extracellular space (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C-X-C motif chemokine 5
RGD Orthologs
Human
Dog
Alliance Genes
More Info more info ...
Latest Assembly: Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly
Position:
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2356,060,084 - 56,063,392 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1456,249,771 - 56,252,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0450,192,665 - 50,195,642 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1456,024,848 - 56,027,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl456,024,848 - 56,027,989 (+)Ensemblpanpan1.1panPan2
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CXCL5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2356,060,084 - 56,063,392 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1456,249,771 - 56,252,734 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0450,192,665 - 50,195,642 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1456,024,848 - 56,027,989 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl456,024,848 - 56,027,989 (+)Ensemblpanpan1.1panPan2
CXCL5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38473,995,642 - 73,998,677 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl473,995,642 - 73,998,677 (-)EnsemblGRCh38hg38GRCh38
GRCh37474,861,359 - 74,864,394 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36475,080,223 - 75,083,280 (-)NCBINCBI36Build 36hg18NCBI36
Build 34475,226,394 - 75,229,451NCBI
Celera472,221,508 - 72,224,565 (-)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef470,672,284 - 70,675,371 (-)NCBIHuRef
CHM1_1474,897,244 - 74,900,331 (-)NCBICHM1_1
T2T-CHM13v2.0477,339,277 - 77,342,312 (-)NCBIT2T-CHM13v2.0
LOC106557449
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11362,514,244 - 62,516,439 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1362,513,898 - 62,515,218 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1362,182,710 - 62,184,937 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01363,324,944 - 63,327,170 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1363,324,875 - 63,327,104 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11362,934,785 - 62,937,011 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01362,424,715 - 62,426,946 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01363,565,344 - 63,567,573 (+)NCBIUU_Cfam_GSD_1.0


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSPPAT00000045690   ⟹   ENSPPAP00000022876
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
PanPan1.1 Ensembl456,024,848 - 56,027,989 (+)Ensembl
RefSeq Acc Id: XM_003832329   ⟹   XP_003832377
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2356,060,084 - 56,063,392 (+)NCBI
NHGRI_mPanPan1456,249,771 - 56,252,734 (+)NCBI
Mhudiblu_PPA_v0450,192,665 - 50,195,642 (+)NCBI
PanPan1.1456,024,848 - 56,027,989 (+)NCBI
Sequence:
RefSeq Acc Id: XM_055111435   ⟹   XP_054967410
Type: CODING
Position:
Bonobo AssemblyChrPosition (strand)Source
NHGRI_mPanPan1-v2356,060,084 - 56,063,392 (+)NCBI
NHGRI_mPanPan1456,249,908 - 56,252,676 (+)NCBI
Protein Sequences
Protein RefSeqs XP_003832377 (Get FASTA)   NCBI Sequence Viewer  
  XP_054967410 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSPPAP00000022876
  ENSPPAP00000022876.1
Reference Protein Sequences
RefSeq Acc Id: XP_003832377   ⟸   XM_003832329
- Peptide Label: isoform X2
- UniProtKB: A0A2R9B6D2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSPPAP00000022876   ⟸   ENSPPAT00000045690
RefSeq Acc Id: XP_054967410   ⟸   XM_055111435
- Peptide Label: isoform X1
Protein Domains
Chemokine interleukin-8-like


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSPPAG00000034610 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSPPAT00000045690.1 UniProtKB/TrEMBL
Gene3D-CATH 2.40.50.40 UniProtKB/TrEMBL
InterPro Chemokine_b/g/d UniProtKB/TrEMBL
  Chemokine_CXC UniProtKB/TrEMBL
  Chemokine_CXC_CS UniProtKB/TrEMBL
  Chemokine_IL8-like_dom UniProtKB/TrEMBL
  CXC_Chemokine_domain UniProtKB/TrEMBL
  Interleukin_8-like_sf UniProtKB/TrEMBL
KEGG Report pps:100975892 UniProtKB/TrEMBL
NCBI Gene CXCL5 ENTREZGENE
PANTHER C-X-C MOTIF CHEMOKINE 5 UniProtKB/TrEMBL
  SMALL INDUCIBLE CYTOKINE A UniProtKB/TrEMBL
Pfam IL8 UniProtKB/TrEMBL
PRINTS INTERLEUKIN8 UniProtKB/TrEMBL
  SMALLCYTKCXC UniProtKB/TrEMBL
PROSITE SMALL_CYTOKINES_CXC UniProtKB/TrEMBL
SMART SCY UniProtKB/TrEMBL
Superfamily-SCOP SSF54117 UniProtKB/TrEMBL
UniProt A0A2R9B6D2 ENTREZGENE, UniProtKB/TrEMBL