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ONTOLOGY REPORT - ANNOTATIONS

Term:detection of biotic stimulus
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Accession:GO:0009595 term browser browse the term
Definition:The series of events in which a biotic stimulus, one caused or produced by a living organism, is received and converted into a molecular signal.
Synonyms:related_synonym: perception of biotic stimulus
 alt_id: GO:0009596

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detection of biotic stimulus term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nlrp3 NLR family pyrin domain containing 3 involved_in ISO (PMID:18604214)
(MGI:7388221|PMID:18403674)		 UniProt PMID:18403674 PMID:18604214 MGI:7388221 NCBI chrNW_004955581:597,952...616,903
Ensembl chrNW_004955581:597,667...617,410 		JBrowse link
contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Smo smoothened, frizzled class receptor involved_in ISO (PMID:9422511) BHF-UCL PMID:9422511 NCBI chrNW_004955479:9,963,377...9,991,670
Ensembl chrNW_004955479:9,964,170...9,993,165 		JBrowse link
G Tspo translocator protein ISO RGD PMID:18190798 RGD:2317142 NCBI chrNW_004955413:28,309,105...28,315,075
Ensembl chrNW_004955413:28,308,658...28,315,075 		JBrowse link
detection of bacterial lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssc5d scavenger receptor cysteine rich family member with 5 domains involved_in ISO (MGI:4939978|PMID:21217009) UniProt PMID:21217009 MGI:4939978 NCBI chrNW_004955567:789,396...809,597
Ensembl chrNW_004955567:789,182...809,636 		JBrowse link
detection of bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Naip NLR family apoptosis inhibitory protein involved_in ISO (MGI:5289703|PMID:21874021) UniProt PMID:21874021 MGI:5289703 NCBI chrNW_004955575:249,659...283,378 JBrowse link
G Nlrc4 NLR family CARD domain containing 4 involved_in ISO (PMID:15107016)
(MGI:5444805|PMID:22885697)		 HGNC-UCL
UniProt		 PMID:15107016 PMID:22885697 MGI:5444805 NCBI chrNW_004955441:570,853...607,529
Ensembl chrNW_004955441:570,880...603,128 		JBrowse link
G Nod1 nucleotide binding oligomerization domain containing 1 involved_in ISO (PMID:15653568) HGNC-UCL PMID:15653568 NCBI chrNW_004955410:31,681,191...31,725,173
Ensembl chrNW_004955410:31,681,077...31,725,173 		JBrowse link
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in ISO (PMID:15653568) HGNC-UCL PMID:15653568 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710 		JBrowse link
G Parg poly(ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO (PMID:15282315) MGI PMID:15282315 NCBI chrNW_004955556:435,264...539,935
Ensembl chrNW_004955556:435,027...535,941 		JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in ISO (PMID:11461926) UniProt PMID:11461926 NCBI chrNW_004955574:424,046...427,675
Ensembl chrNW_004955574:424,142...427,540 		JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in ISO (PMID:11461926) UniProt PMID:11461926 NCBI chrNW_004955495:7,785,398...7,792,158
Ensembl chrNW_004955495:7,785,193...7,796,210 		JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in ISO (PMID:11461926) UniProt PMID:11461926 NCBI chrNW_004955592:100,022...111,609
Ensembl chrNW_004955592:100,088...111,610 		JBrowse link
detection of cell density term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Atf2 activating transcription factor 2 involved_in ISO (PMID:17189429) MGI PMID:17189429 NCBI chrNW_004955449:332,563...411,218
Ensembl chrNW_004955449:338,193...411,218 		JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258 		JBrowse link
G Tlr6 toll like receptor 6 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955443:8,401,461...8,427,175
Ensembl chrNW_004955443:8,422,534...8,424,942 		JBrowse link
detection of lipopolysaccharide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ly96 lymphocyte antigen 96 involved_in ISO (PMID:19252480) UniProt PMID:19252480 NCBI chrNW_004955444:6,356,121...6,387,350
Ensembl chrNW_004955444:6,356,154...6,387,529 		JBrowse link
G Nr4a1 nuclear receptor subfamily 4 group A member 1 involved_in ISO (MGI:7463870|PMID:37001519) UniProt PMID:37001519 MGI:7463870 NCBI chrNW_004955547:2,404,532...2,426,882
Ensembl chrNW_004955547:2,404,532...2,431,050 		JBrowse link
G Scarb1 scavenger receptor class B member 1 involved_in ISO (PMID:12651854) BHF-UCL PMID:12651854 NCBI chrNW_004955482:4,813,502...4,836,479
Ensembl chrNW_004955482:4,813,955...4,837,392 		JBrowse link
G Tlr4 toll like receptor 4 involved_in ISO (PMID:19252480)
(MGI:5913054|PMID:28098138)		 UniProt PMID:19252480 PMID:28098138 MGI:5913054 NCBI chrNW_004955419:10,190,937...10,201,896
Ensembl chrNW_004955419:10,191,120...10,202,135 		JBrowse link
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:5572888|PMID:12847223) BHF-UCL PMID:12847223 MGI:5572888 NCBI chrNW_004955437:7,780,886...7,785,597
Ensembl chrNW_004955437:7,780,679...7,785,697 		JBrowse link
detection of lipoteichoic acid term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:5572888|PMID:12847223) BHF-UCL PMID:12847223 MGI:5572888 NCBI chrNW_004955437:7,780,886...7,785,597
Ensembl chrNW_004955437:7,780,679...7,785,697 		JBrowse link
detection of molecule of bacterial origin term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr9 toll like receptor 9 involved_in ISO (PMID:17128265) BHF-UCL PMID:17128265 NCBI chrNW_004955532:3,828,645...3,832,699
Ensembl chrNW_004955532:3,828,775...3,832,582 		JBrowse link
detection of muramyl dipeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Nod2 nucleotide binding oligomerization domain containing 2 involved_in
acts_upstream_of_or_within		 ISO (PMID:15998797)
(PMID:12527755)		 HGNC-UCL
MGI		 PMID:12527755 PMID:15998797 NCBI chrNW_004955433:8,746,213...8,780,119
Ensembl chrNW_004955433:8,746,004...8,782,710 		JBrowse link
detection of peptidoglycan term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Trem2 triggering receptor expressed on myeloid cells 2 involved_in ISO (MGI:5572888|PMID:12847223) BHF-UCL PMID:12847223 MGI:5572888 NCBI chrNW_004955437:7,780,886...7,785,597
Ensembl chrNW_004955437:7,780,679...7,785,697 		JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll like receptor 1 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955443:8,442,419...8,450,318
Ensembl chrNW_004955443:8,447,956...8,450,382 		JBrowse link
G Tlr2 toll like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) MGI PMID:19931471 NCBI chrNW_004955471:8,011,710...8,019,063
Ensembl chrNW_004955471:8,014,910...8,017,258 		JBrowse link
detection of tumor cell term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Crtam cytotoxic and regulatory T cell molecule involved_in ISO (PMID:15811952)
(MGI:3689781|PMID:15811952)		 HGNC-UCL
UniProt		 PMID:15811952 MGI:3689781 NCBI chrNW_004955412:23,676,171...23,706,250
Ensembl chrNW_004955412:23,675,906...23,709,262 		JBrowse link
negative regulation of cell growth involved in contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cdhr2 cadherin related family member 2 involved_in ISO (PMID:12117771) UniProt PMID:12117771 NCBI chrNW_004955408:28,832,362...28,871,345
Ensembl chrNW_004955408:28,832,325...28,875,534 		JBrowse link
negative regulation of cell proliferation involved in contact inhibition term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Dach1 dachshund family transcription factor 1 acts_upstream_of_or_within ISO (PMID:17182846) MGI PMID:17182846 NCBI chrNW_004955404:34,739,780...35,118,037
Ensembl chrNW_004955404:34,740,026...35,137,490 		JBrowse link
G Fap fibroblast activation protein alpha involved_in ISO (MGI:3047166|PMID:15133496) UniProt PMID:15133496 MGI:3047166 NCBI chrNW_004955449:11,623,838...11,694,256
Ensembl chrNW_004955449:11,623,741...11,694,335 		JBrowse link
G Pak1 p21 (RAC1) activated kinase 1 involved_in ISO (PMID:12912914) UniProt PMID:12912914 NCBI chrNW_004955414:14,365,325...14,447,470
Ensembl chrNW_004955414:14,365,157...14,450,611 		JBrowse link
G Srpx sushi repeat containing protein X-linked acts_upstream_of_or_within ISO (PMID:12049817) MGI PMID:12049817 NCBI chrNW_004955601:286,092...364,235
Ensembl chrNW_004955601:286,069...364,235 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 12360
    response to stimulus 6685
      detection of stimulus 191
        detection of biotic stimulus 28
          detection of cell density + 8
          detection of endogenous biotic stimulus 0
          detection of endoplasmic reticulum overloading 0
          detection of external biotic stimulus + 18
          detection of tumor cell 1
paths to the root