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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription initiation at RNA polymerase I promoter
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Accession:GO:0006361 term browser browse the term
Definition:A transcription initiation process that takes place at a RNA polymerase I gene promoter. Ribosomal RNAs (rRNA) genes are transcribed by RNA polymerase I.
Comment:Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation.
Synonyms:exact_synonym: transcription initiation from Pol I promoter;   transcription initiation from RNA polymerase I promoter
 narrow_synonym: transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript
 alt_id: GO:0001180


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transcription initiation at RNA polymerase I promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CAVIN1 caveolae associated protein 1 involved_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr17:14,892,936...14,914,017
Ensembl chr17:15,117,091...15,139,223 		JBrowse link
G POLR1E RNA polymerase I subunit E involved_in IEA Ensembl GO_REF:0000107 NCBI chr 9:37,331,149...37,348,652
Ensembl chr 9:38,255,067...38,272,498 		JBrowse link
G POLR1G RNA polymerase I subunit G involved_in IEA Ensembl GO_REF:0000107 NCBI chr19:42,354,919...42,359,537
Ensembl chr19:50,951,038...50,953,826 		JBrowse link
G RRN3 RRN3 homolog, RNA polymerase I transcription factor involved_in
acts_upstream_of_or_within		 ISO (PMID:11250903)
(PMID:15989966)		 UniProt
MGI		 PMID:11250903 PMID:15989966 NCBI chr16:13,664,478...13,700,942 JBrowse link
G TAF1 TATA-box binding protein associated factor 1 involved_in IEA Ensembl GO_REF:0000107 NCBI chr  X:60,630,137...60,729,904
Ensembl chr  X:70,684,217...70,782,323 		JBrowse link
G TTF1 transcription termination factor 1 acts_upstream_of_or_within ISO (PMID:7720715) MGI PMID:7720715 NCBI chr 9:103,495,737...103,525,775
Ensembl chr 9:132,129,318...132,158,660 		JBrowse link
G UBTF upstream binding transcription factor involved_in IEA Ensembl GO_REF:0000107 NCBI chr17:13,176,228...13,191,283
Ensembl chr17:13,343,349...13,356,836 		JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G POLR1E RNA polymerase I subunit E involved_in
acts_upstream_of_or_within		 IEA
ISO		 (PMID:8641287) Ensembl
MGI
TreeGrafter		 PMID:8641287 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:37,331,149...37,348,652
Ensembl chr 9:38,255,067...38,272,498 		JBrowse link
G SMARCA4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IEA GOC GO_REF:0000108 NCBI chr19:10,515,216...10,616,155
Ensembl chr19:11,250,006...11,334,952 		JBrowse link
G SMARCB1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA GOC GO_REF:0000108 NCBI chr22:4,542,764...4,589,461
Ensembl chr22:22,627,982...22,673,921 		JBrowse link
G TAF1B TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in IEA Ensembl
InterPro		 GO_REF:0000002 GO_REF:0000107 NCBI chr2A:9,834,385...9,927,129
Ensembl chr2A:9,996,146...10,087,740 		JBrowse link
G TAF1C TATA-box binding protein associated factor, RNA polymerase I subunit C involved_in IEA GOC GO_REF:0000108 NCBI chr16:64,843,197...64,852,408
Ensembl chr16:84,184,928...84,194,147 		JBrowse link
G TBP TATA-box binding protein involved_in IEA GOC GO_REF:0000108 NCBI chr 6:168,714,214...168,732,744
Ensembl chr 6:173,800,240...173,826,909 		JBrowse link
G UBTF upstream binding transcription factor involved_in IEA GOC GO_REF:0000108 NCBI chr17:13,176,228...13,191,283
Ensembl chr17:13,343,349...13,356,836 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 16442
    metabolic process 10307
      organic substance metabolic process 9873
        macromolecule metabolic process 8344
          macromolecule biosynthetic process 6495
            RNA biosynthetic process 3182
              DNA-templated transcription initiation 178
                transcription initiation at RNA polymerase I promoter 12
                  RNA polymerase I preinitiation complex assembly 7
                  regulation of transcription initiation by RNA polymerase I 0
Path 2
Term Annotations click to browse term
  biological_process 16442
    metabolic process 10307
      organic substance metabolic process 9873
        organic cyclic compound metabolic process 5564
          nucleobase-containing compound metabolic process 5111
            nucleic acid metabolic process 4614
              nucleic acid biosynthetic process 3305
                RNA biosynthetic process 3182
                  DNA-templated transcription 3154
                    DNA-templated transcription initiation 178
                      transcription initiation at RNA polymerase I promoter 12
                        RNA polymerase I preinitiation complex assembly 7
                        regulation of transcription initiation by RNA polymerase I 0
paths to the root