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ONTOLOGY REPORT - ANNOTATIONS

Term:transcription initiation at RNA polymerase I promoter
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Accession:GO:0006361 term browser browse the term
Definition:A transcription initiation process that takes place at a RNA polymerase I gene promoter. Ribosomal RNAs (rRNA) genes are transcribed by RNA polymerase I.
Comment:Note that promoter clearance is represented as a separate step, not part_of either initiation or elongation.
Synonyms:exact_synonym: transcription initiation from Pol I promoter;   transcription initiation from RNA polymerase I promoter
 narrow_synonym: transcription initiation from RNA polymerase I promoter for nuclear large rRNA transcript
 alt_id: GO:0001180


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transcription initiation at RNA polymerase I promoter term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Cavin1 caveolae associated protein 1 involved_in ISS
ISO
IBA
IEA		 PMID:9582279
(PMID:9582279)
(MGI:3711373|PMID:11139612)
GO_REF:0000033
GO_REF:0000118		 RGD
GO_Central
TreeGrafter		 PMID:9582279 PMID:11139612 PMID:9582279 GO_REF:0000033 GO_REF:0000118 MGI:3711373, RGD:8554461 NCBI chr10:85,884,100...85,896,136
Ensembl chr10:85,889,036...85,896,120 		JBrowse link
G Lipe lipase E, hormone sensitive type involved_in ISS PMID:9582279 UniProt PMID:9582279 RGD:8554461 NCBI chr 1:80,965,612...80,984,313
Ensembl chr 1:80,965,627...80,984,310 		JBrowse link
G Polr1e RNA polymerase I subunit E involved_in ISO (PMID:16809778) RGD PMID:16809778 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369 		JBrowse link
G Polr1g RNA polymerase I subunit G involved_in IEA
ISO		 GO_REF:0000107
(PMID:16809778)		 Ensembl
RGD		 PMID:16809778 GO_REF:0000107 NCBI chr 1:79,007,490...79,010,766
Ensembl chr 1:79,007,490...79,010,766 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:11250903)
MGI:3584037 (PMID:15989966)		 GO_Central
RGD		 PMID:11250903 PMID:15989966 GO_REF:0000033 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Taf1 TATA-box binding protein associated factor 1 involved_in ISO UniProtKB:P17480|UniProtKB:Q15572 (PMID:12498690) RGD PMID:12498690 NCBI chr  X:66,640,915...66,716,543
Ensembl chr  X:66,640,982...66,716,543 		JBrowse link
G Ttf1 transcription termination factor 1 acts_upstream_of_or_within ISO (PMID:7720715) RGD PMID:7720715 NCBI chr 3:12,384,626...12,409,257
Ensembl chr 3:12,384,655...12,409,257 		JBrowse link
G Ubtf upstream binding transcription factor involved_in ISS
ISO		 GO_REF:0000024
(PMID:12498690), (PMID:16809778), (PMID:16858408)		 UniProt
RGD		 PMID:12498690 PMID:16809778 PMID:16858408 GO_REF:0000024 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
RNA polymerase I preinitiation complex assembly term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Baz2a bromodomain adjacent to zinc finger domain, 2A involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 7:523,204...560,911
Ensembl chr 7:523,265...560,659 		JBrowse link
G Polr1e RNA polymerase I subunit E involved_in
acts_upstream_of_or_within		 IBA
ISO		 GO_REF:0000033
(PMID:8641287)		 GO_Central
RGD		 PMID:8641287 GO_REF:0000033 NCBI chr 5:59,279,456...59,295,346
Ensembl chr 5:59,279,460...59,295,369 		JBrowse link
G Rrn3 RRN3 homolog, RNA polymerase I transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:2,129,949...2,165,381
Ensembl chr10:2,129,978...2,165,663 		JBrowse link
G Smarca4 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 8:20,167,717...20,258,975
Ensembl chr 8:20,167,717...20,258,975 		JBrowse link
G Smarcb1 SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1 involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr20:12,741,164...12,763,616
Ensembl chr20:12,741,477...12,763,620 		JBrowse link
G Taf1b TATA-box binding protein associated factor, RNA polymerase I subunit B involved_in ISO
IEA
ISS		 (PMID:21921199)
GO_REF:0000107
GO_REF:0000024		 RGD
Ensembl
UniProt		 PMID:21921199 GO_REF:0000024 GO_REF:0000107 NCBI chr 6:41,116,980...41,194,593
Ensembl chr 6:41,117,420...41,194,593 		JBrowse link
G Taf1c TATA-box binding protein associated factor, RNA polymerase 1 subunit C involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr19:47,652,451...47,658,971
Ensembl chr19:47,652,452...47,658,971 		JBrowse link
G Tbp TATA box binding protein involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr 1:56,463,330...56,480,430
Ensembl chr 1:56,463,618...56,510,016 		JBrowse link
G Ubtf upstream binding transcription factor involved_in IEA GO_REF:0000108 GOC GO_REF:0000108 NCBI chr10:87,258,217...87,274,291
Ensembl chr10:87,258,217...87,272,969 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        macromolecule metabolic process 9578
          macromolecule biosynthetic process 7463
            RNA biosynthetic process 3411
              DNA-templated transcription initiation 183
                transcription initiation at RNA polymerase I promoter 14
                  RNA polymerase I preinitiation complex assembly 9
                  regulation of transcription initiation by RNA polymerase I 0
Path 2
Term Annotations click to browse term
  biological_process 20413
    metabolic process 11835
      organic substance metabolic process 11328
        organic cyclic compound metabolic process 6260
          nucleobase-containing compound metabolic process 5743
            nucleic acid metabolic process 5144
              nucleic acid biosynthetic process 3542
                RNA biosynthetic process 3411
                  DNA-templated transcription 3388
                    DNA-templated transcription initiation 183
                      transcription initiation at RNA polymerase I promoter 14
                        RNA polymerase I preinitiation complex assembly 9
                        regulation of transcription initiation by RNA polymerase I 0
paths to the root