Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:cytoplasmic side of endoplasmic reticulum membrane
go back to main search page
Accession:GO:0098554 term browser browse the term
Definition:The side (leaflet) of the plasma membrane that faces the cytoplasm.


show annotations for term's descendants           Sort by:
cytoplasmic side of endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg13 asparagine-linked glycosylation 13 is_active_in ISO (PMID:16100110) UniProt PMID:16100110 NCBI chr  X:143,100,962...143,157,446
Ensembl chr  X:143,100,800...143,157,446 		JBrowse link
G Alg14 asparagine-linked glycosylation 14 is_active_in ISO (PMID:16100110) UniProt PMID:16100110 NCBI chr 3:121,085,361...121,156,745
Ensembl chr 3:121,085,422...121,156,743 		JBrowse link
G Alg2 ALG2 alpha-1,3/1,6-mannosyltransferase is_active_in ISO (PMID:35136180) UniProt PMID:35136180 NCBI chr 4:47,469,833...47,474,367
Ensembl chr 4:47,465,067...47,474,333 		JBrowse link
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha located_in IDA (PMID:15102711) MGI PMID:15102711 NCBI chr10:11,218,435...11,335,408
Ensembl chr10:11,219,148...11,335,388 		JBrowse link
G Epm2aip1 EPM2A interacting protein 1 located_in IDA (PMID:15102711) MGI PMID:15102711 NCBI chr 9:111,100,913...111,108,161
Ensembl chr 9:111,100,997...111,108,161 		JBrowse link
G H13 histocompatibility 13 located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:152,511,292...152,550,590
Ensembl chr 2:152,511,381...152,550,590 		JBrowse link
G Itpr3 inositol 1,4,5-triphosphate receptor 3 located_in IDA (MGI:4849347|PMID:21030605) UniProt PMID:21030605 MGI:4849347 NCBI chr17:27,275,976...27,341,197
Ensembl chr17:27,276,278...27,341,197 		JBrowse link
G Otulinl OTU deubiquitinase with linear linkage specificity like located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:27,655,154...27,681,630
Ensembl chr15:27,655,155...27,681,665 		JBrowse link
G Pkd2 polycystin 2, transient receptor potential cation channel located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:104,599,379...104,653,685
Ensembl chr 5:104,607,316...104,653,685 		JBrowse link
G Ptpn1 protein tyrosine phosphatase, non-receptor type 1 located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:167,772,670...167,821,305
Ensembl chr 2:167,773,977...167,821,305 		JBrowse link
G Sppl2a signal peptide peptidase like 2A located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:126,732,311...126,775,706
Ensembl chr 2:126,732,311...126,775,155 		JBrowse link
G Sppl2b signal peptide peptidase like 2B located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:80,691,067...80,704,542
Ensembl chr10:80,691,109...80,704,542 		JBrowse link
G Sppl2c signal peptide peptidase 2C located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:104,077,153...104,081,992
Ensembl chr11:104,077,153...104,081,989 		JBrowse link
G Sppl3 signal peptide peptidase 3 located_in
is_active_in		 ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 5:115,149,204...115,236,849
Ensembl chr 5:115,149,196...115,236,849 		JBrowse link
cytoplasmic side of rough endoplasmic reticulum membrane term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alg5 ALG5 dolichyl-phosphate beta-glucosyltransferase is_active_in ISO (PMID:10359825) UniProt PMID:10359825 NCBI chr 3:54,642,960...54,657,216
Ensembl chr 3:54,642,960...54,658,739 		JBrowse link
G Epm2a epilepsy, progressive myoclonic epilepsy, type 2 gene alpha located_in ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:11,218,435...11,335,408
Ensembl chr10:11,219,148...11,335,388 		JBrowse link
G Gnrh1 gonadotropin releasing hormone 1 located_in ISO gonadotropin-releasing hormone-associated peptide MGI
RGD		 PMID:2183089 GO_REF:0000096 MGI:4417868 RGD:9685146 NCBI chr14:67,982,717...67,986,889
Ensembl chr14:67,982,630...67,986,888 		JBrowse link
G Icmt isoprenylcysteine carboxyl methyltransferase located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:152,381,671...152,391,583
Ensembl chr 4:152,381,684...152,391,578 		JBrowse link
G Mgat2 mannoside acetylglucosaminyltransferase 2 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr12:69,230,932...69,233,547
Ensembl chr12:69,230,931...69,233,544 		JBrowse link
G Rpl10 ribosomal protein L10 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr  X:73,314,463...73,316,741
Ensembl chr  X:73,314,418...73,316,741 		JBrowse link
G Rpl11 ribosomal protein L11 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:135,776,665...135,780,704
Ensembl chr 4:135,755,576...135,780,739 		JBrowse link
G Rpl23 ribosomal protein L23 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr11:97,668,352...97,673,265
Ensembl chr11:97,668,353...97,673,263 		JBrowse link
G Rpl27 ribosomal protein L27 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr11:101,333,071...101,336,422
Ensembl chr11:101,333,124...101,336,355 		JBrowse link
G Rpl29 ribosomal protein L29 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 9:106,306,631...106,308,768
Ensembl chr 9:106,306,653...106,308,767 		JBrowse link
G Rpl31 ribosomal protein L31 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 1:39,406,987...39,410,992
Ensembl chr 1:39,406,923...39,410,992 		JBrowse link
G Rpl32 ribosomal protein L32 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 6:115,782,475...115,785,704
Ensembl chr 6:115,782,466...115,785,708 		JBrowse link
G Rpl35 ribosomal protein L35 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 2:38,891,593...38,895,143
Ensembl chr 2:38,891,592...38,895,636 		JBrowse link
G Rpl6 ribosomal protein L6 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 5:121,342,564...121,347,304
Ensembl chr 5:121,342,544...121,347,304 		JBrowse link
G Rps15 ribosomal protein S15 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr10:80,128,265...80,129,948
Ensembl chr10:80,128,287...80,129,948 		JBrowse link
G Rps16 ribosomal protein S16 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:28,050,114...28,052,123
Ensembl chr 7:28,050,077...28,052,580 		JBrowse link
G Rps17 ribosomal protein S17 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:80,992,481...80,994,982
Ensembl chr 7:80,992,480...80,995,002 		JBrowse link
G Rps18 ribosomal protein S18 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr17:34,170,972...34,174,639
Ensembl chr17:34,170,973...34,174,975 		JBrowse link
G Rps20 ribosomal protein S20 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 4:3,831,334...3,835,600
Ensembl chr 4:3,831,334...3,835,665 		JBrowse link
G Rps21 ribosomal protein S21 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 2:179,899,172...179,900,237
Ensembl chr 2:179,899,170...179,900,238 		JBrowse link
G Rps23 ribosomal protein S23 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr13:91,071,241...91,072,851
Ensembl chr13:91,071,077...91,073,069 		JBrowse link
G Rps26 ribosomal protein S26 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr10:128,460,398...128,462,375
Ensembl chr10:128,460,403...128,462,616 		JBrowse link
G Rps28 ribosomal protein S28 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr17:34,042,010...34,043,536
Ensembl chr17:34,038,001...34,043,536 		JBrowse link
G Rps29 ribosomal protein S29 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr12:69,204,495...69,205,891
Ensembl chr12:69,204,496...69,205,960 		JBrowse link
G Rps3 ribosomal protein S3 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 7:99,127,103...99,132,916
Ensembl chr 7:99,127,103...99,132,945 		JBrowse link
G Rpsa ribosomal protein SA located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 9:119,956,832...119,961,435
Ensembl chr 9:119,956,755...119,961,435 		JBrowse link
G Uba52 ubiquitin A-52 residue ribosomal protein fusion product 1 located_in ISO (PMID:24930395) UniProt PMID:24930395 NCBI chr 8:70,960,913...70,963,067
Ensembl chr 8:70,960,913...70,963,451 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28585
    cellular anatomical entity 19620
      side of membrane 888
        cytoplasmic side of membrane 231
          cytoplasmic side of endoplasmic reticulum membrane 40
            cytoplasmic side of rough endoplasmic reticulum membrane 27
            cytoplasmic side of smooth endoplasmic reticulum membrane 0
Path 2
Term Annotations click to browse term
  cellular_component 28585
    cellular anatomical entity 19620
      intracellular anatomical structure 14781
        intracellular organelle 13156
          intracellular membrane-bounded organelle 12012
            endoplasmic reticulum 1941
              endoplasmic reticulum subcompartment 755
                endoplasmic reticulum membrane 741
                  cytoplasmic side of endoplasmic reticulum membrane 40
                    cytoplasmic side of rough endoplasmic reticulum membrane 27
                    cytoplasmic side of smooth endoplasmic reticulum membrane 0
paths to the root