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ONTOLOGY REPORT - ANNOTATIONS

Term:catalytic step 2 spliceosome
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Accession:GO:0071013 term browser browse the term
Definition:A spliceosomal complex that contains three snRNPs, including U5, bound to a splicing intermediate in which the first catalytic cleavage of the 5' splice site has occurred. The precise subunit composition differs significantly from that of the catalytic step 1, or activated, spliceosome, and includes many proteins in addition to those found in the associated snRNPs.
Synonyms:narrow_synonym: mammalian spliceosomal complex C;   mammalian spliceosomal complex C1;   yeast spliceosomal complex A2-2


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catalytic step 2 spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Alyref Aly/REF export factor part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:120,485,330...120,489,342
Ensembl chr11:120,482,947...120,489,191 		JBrowse link
G Alyref2 Aly/REF export factor 2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:171,331,046...171,332,318
Ensembl chr 1:171,331,046...171,332,324 		JBrowse link
G Alyreffm1 Aly/REF export factor family member 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:31,180,159...31,261,737
Ensembl chr 1:31,036,933...31,261,765 		JBrowse link
G Alyreffm10 Aly/REF export factor family member 10 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:104,029,903...104,032,383
Ensembl chr10:104,029,903...104,032,383 		JBrowse link
G Alyreffm11 Aly/REF export factor family member 11 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:103,978,848...103,981,288
Ensembl chr10:103,978,848...103,981,317 		JBrowse link
G Alyreffm3 Aly/REF export factor family member 3 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:31,016,327...31,017,049
Ensembl chr 1:31,016,324...31,017,049 		JBrowse link
G Alyreffm4 Aly/REF export factor family member 4 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:100,171,538...100,172,451
Ensembl chr10:100,171,538...100,172,451 		JBrowse link
G Alyreffm5 Aly/REF export factor family member 5 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:100,176,698...100,177,624
Ensembl chr10:100,176,698...100,177,624 		JBrowse link
G Alyreffm6 Aly/REF export factor family member 6 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:100,181,834...100,182,743
Ensembl chr10:100,181,834...100,182,743 		JBrowse link
G Alyreffm7 Aly/REF export factor family member 7 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:100,186,955...100,187,864
Ensembl chr10:100,186,955...100,187,864 		JBrowse link
G Alyreffm8 Aly/REF export factor family member 8 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:100,197,200...100,198,109
Ensembl chr10:100,197,200...100,198,109 		JBrowse link
G Alyreffm9 Aly/REF export factor family member 9 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:100,217,509...100,218,422
Ensembl chr10:100,217,532...100,218,392 		JBrowse link
G Aqr aquarius part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:113,931,642...114,005,788
Ensembl chr 2:113,931,651...114,017,505 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor part_of IBA GO_Central GO_REF:0000033 NCBI chr 3:103,078,971...103,086,479
Ensembl chr 3:103,078,971...103,086,482 		JBrowse link
G Cactin cactin, spliceosome C complex subunit part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:81,156,937...81,162,085
Ensembl chr10:81,156,937...81,162,076 		JBrowse link
G Cdc40 cell division cycle 40 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:40,707,617...40,759,139
Ensembl chr10:40,707,617...40,759,307 		JBrowse link
G Cdc5l cell division cycle 5-like part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:45,702,809...45,744,633
Ensembl chr17:45,702,810...45,744,663 		JBrowse link
G Cdc5lrt1 cell division cycle 5 like, retrotransposed 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,074,241...118,076,700
Ensembl chr10:118,074,277...118,076,685 		JBrowse link
G Cdc5lrt10 cell division cycle 5 like, retrotransposed 10 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,187,324...118,190,025
Ensembl chr10:118,187,602...118,190,010 		JBrowse link
G Cdc5lrt4 cell division cycle 5 like, retrotransposed 4 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,094,577...118,097,037
Ensembl chr10:118,094,593...118,097,001 		JBrowse link
G Cdc5lrt5 cell division cycle 5 like, retrotransposed 5 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,160,141...118,162,889
Ensembl chr10:118,160,466...118,162,874 		JBrowse link
G Cdc5lrt6 cell division cycle 5 like, retrotransposed 6 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,165,876...118,168,330
Ensembl chr10:118,165,905...118,168,313 		JBrowse link
G Cdc5lrt7 cell division cycle 5 like, retrotransposed 7 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,171,007...118,173,751
Ensembl chr10:118,171,328...118,173,736 		JBrowse link
G Cdc5lrt8 cell division cycle 5 like, retrotransposed 8 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,176,721...118,179,175
Ensembl chr10:118,176,752...118,179,160 		JBrowse link
G Cdc5lrt9 cell division cycle 5 like, retrotransposed 9 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,182,150...118,184,599
Ensembl chr10:118,182,176...118,184,584 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:145,759,402...145,776,620
Ensembl chr 2:145,759,399...145,776,934 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 9:14,411,876...14,421,920
Ensembl chr 9:14,411,913...14,421,873 		JBrowse link
G Cwc22 CWC22 spliceosome-associated protein part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:77,706,312...77,776,705
Ensembl chr 2:77,711,503...77,776,719 		JBrowse link
G Cwc22rt1 CWC22 spliceosome-associated protein, retrotransposed 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,785,949...83,789,002
Ensembl chr 2:83,786,037...83,788,529 		JBrowse link
G Cwc22rt2 CWC22 spliceosome-associated protein, retrotransposed 2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,791,759...83,794,812
Ensembl chr 2:83,791,847...83,794,339 		JBrowse link
G Cwc22rt3 CWC22 spliceosome-associated protein, retrotransposed 3 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:83,797,569...83,800,622
Ensembl chr 2:83,797,657...83,800,149 		JBrowse link
G Cwc22rt4 CWC22 spliceosome-associated protein, retrotransposed 4 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,803,379...83,806,432
Ensembl chr 2:83,803,467...83,805,959 		JBrowse link
G Cwc22rt5 CWC22 spliceosome-associated protein, retrotransposed 5 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,809,189...83,812,242
Ensembl chr 2:83,809,277...83,811,769 		JBrowse link
G Cwc22rt6 CWC22 spliceosome-associated protein, retrotransposed 6 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:83,820,809...83,823,862
Ensembl chr 2:83,820,897...83,823,389 		JBrowse link
G Cwc22rt7 CWC22 spliceosome-associated protein, retrotransposed 7 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,814,999...83,818,052
Ensembl chr 2:83,815,087...83,817,579 		JBrowse link
G Cwc27 CWC27 spliceosome-associated protein part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr13:104,767,648...104,953,649
Ensembl chr13:104,767,648...104,953,650 		JBrowse link
G Ddx23 DEAD box helicase 23 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr15:98,543,012...98,560,808
Ensembl chr15:98,543,015...98,560,775 		JBrowse link
G Ddx41 DEAD box helicase 41 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:55,678,223...55,684,471
Ensembl chr13:55,678,223...55,684,471 		JBrowse link
G Ddx5 DEAD box helicase 5 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:106,671,181...106,680,011
Ensembl chr11:106,671,181...106,680,011 		JBrowse link
G Dhx35 DEAH-box helicase 35 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:158,636,674...158,700,141
Ensembl chr 2:158,636,727...158,700,134 		JBrowse link
G Dhx38 DEAH-box helicase 38 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:110,274,631...110,292,493
Ensembl chr 8:110,274,643...110,292,493 		JBrowse link
G Dhx8 DEAH-box helicase 8 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:101,623,782...101,658,184
Ensembl chr11:101,623,745...101,658,184 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:102,729,298...102,771,999
Ensembl chr11:102,729,299...102,771,811 		JBrowse link
G Eif4a3 eukaryotic translation initiation factor 4A3 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:119,179,189...119,190,869
Ensembl chr11:119,179,189...119,190,915 		JBrowse link
G Eif4a3l1 eukaryotic translation initiation factor 4A3 like 1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:136,304,537...136,306,981
Ensembl chr 6:136,304,537...136,306,981 		JBrowse link
G Eif4a3l2 eukaryotic translation initiation factor 4A3 like 2 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:116,527,132...116,529,563
Ensembl chr 6:116,528,102...116,529,463 		JBrowse link
G Ess2 ess-2 splicing factor part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr16:17,718,573...17,729,225
Ensembl chr16:17,718,573...17,729,212 		JBrowse link
G Frg1 FSHD region gene 1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 8:41,842,218...41,870,179
Ensembl chr 8:41,850,496...41,870,111 		JBrowse link
G Gpatch1 G patch domain containing 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:34,975,969...35,017,865
Ensembl chr 7:34,975,961...35,017,865 		JBrowse link
G Hnrnpa1 heterogeneous nuclear ribonucleoprotein A1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr15:103,148,840...103,155,119
Ensembl chr15:103,148,859...103,155,119 		JBrowse link
G Hnrnpa2b1 heterogeneous nuclear ribonucleoprotein A2/B1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:51,437,414...51,448,054
Ensembl chr 6:51,437,912...51,446,874 		JBrowse link
G Hnrnpa3 heterogeneous nuclear ribonucleoprotein A3 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:75,489,416...75,499,751
Ensembl chr 2:75,489,605...75,499,751 		JBrowse link
G Hnrnpc heterogeneous nuclear ribonucleoprotein C part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr14:52,310,834...52,341,462
Ensembl chr14:52,310,834...52,341,485 		JBrowse link
G Hnrnpf heterogeneous nuclear ribonucleoprotein F part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:117,877,301...117,902,583
Ensembl chr 6:117,877,285...117,902,583 		JBrowse link
G Hnrnph1 heterogeneous nuclear ribonucleoprotein H1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:50,266,084...50,277,355
Ensembl chr11:50,267,817...50,277,355 		JBrowse link
G Hnrnpk heterogeneous nuclear ribonucleoprotein K part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:58,538,946...58,551,157
Ensembl chr13:58,538,956...58,551,157 		JBrowse link
G Hnrnpm heterogeneous nuclear ribonucleoprotein M part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:33,865,207...33,904,432
Ensembl chr17:33,865,207...33,905,834 		JBrowse link
G Hnrnpr heterogeneous nuclear ribonucleoprotein R part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:136,038,230...136,086,758
Ensembl chr 4:136,038,253...136,086,758 		JBrowse link
G Hnrnpu heterogeneous nuclear ribonucleoprotein U part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:178,148,673...178,170,063
Ensembl chr 1:178,148,673...178,165,362 		JBrowse link
G Isy1 ISY1 splicing factor homolog part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:87,795,429...87,815,723
Ensembl chr 6:87,791,251...87,815,780 		JBrowse link
G Lsm2 LSM2 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr17:35,200,830...35,204,867
Ensembl chr17:35,200,838...35,204,867 		JBrowse link
G Lsm3 LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:91,493,017...91,499,602
Ensembl chr 6:91,492,910...91,499,607 		JBrowse link
G Lsm7 LSM7 homolog, U6 small nuclear RNA and mRNA degradation associated part_of IBA GO_Central GO_REF:0000033 NCBI chr10:80,688,659...80,691,043
Ensembl chr10:80,688,655...80,691,043 		JBrowse link
G Magoh mago homolog, exon junction complex core component part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:107,736,952...107,744,621
Ensembl chr 4:107,736,952...107,744,621 		JBrowse link
G Magohb mago homolog B, exon junction complex core component part_of IBA GO_Central GO_REF:0000033 NCBI chr 6:131,261,351...131,270,207
Ensembl chr 6:131,261,351...131,270,207 		JBrowse link
G Mtrex Mtr4 exosome RNA helicase part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:113,004,306...113,063,914
Ensembl chr13:113,003,952...113,063,932 		JBrowse link
G Pabpc1 poly(A) binding protein, cytoplasmic 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr15:36,595,902...36,609,825
Ensembl chr15:36,595,905...36,609,912 		JBrowse link
G Plrg1 pleiotropic regulator 1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 3:82,962,845...82,979,598
Ensembl chr 3:82,962,829...82,979,662 		JBrowse link
G Pnn pinin part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr12:59,113,705...59,120,803
Ensembl chr12:59,113,670...59,120,784 		JBrowse link
G Ppie peptidylprolyl isomerase E (cyclophilin E) part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:123,020,907...123,033,783
Ensembl chr 4:123,020,908...123,033,744 		JBrowse link
G Ppil1 peptidylprolyl isomerase (cyclophilin)-like 1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr17:29,469,809...29,482,945
Ensembl chr17:29,469,777...29,483,160 		JBrowse link
G Ppil2 peptidylprolyl isomerase (cyclophilin)-like 2 part_of IBA GO_Central GO_REF:0000033 NCBI chr16:16,904,419...16,929,126
Ensembl chr16:16,904,419...16,929,121 		JBrowse link
G Ppil3 peptidylprolyl isomerase (cyclophilin)-like 3 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:58,470,152...58,484,878
Ensembl chr 1:58,470,153...58,484,645 		JBrowse link
G Ppwd1 peptidylprolyl isomerase domain and WD repeat containing 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:104,340,102...104,365,378
Ensembl chr13:104,341,632...104,365,351 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:10,872,595...10,886,923
Ensembl chr19:10,872,595...10,886,923 		JBrowse link
G Prpf4b pre-mRNA processing factor 4B part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr13:35,058,803...35,090,047
Ensembl chr13:35,059,285...35,090,047 		JBrowse link
G Prpf6 pre-mRNA splicing factor 6 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:181,243,112...181,297,454
Ensembl chr 2:181,233,661...181,297,453 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:75,377,603...75,400,273
Ensembl chr11:75,377,642...75,400,275 		JBrowse link
G Raly hnRNP-associated with lethal yellow part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:154,632,989...154,712,930
Ensembl chr 2:154,633,016...154,709,181 		JBrowse link
G Rbm22 RNA binding motif protein 22 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:60,693,858...60,705,801
Ensembl chr18:60,693,808...60,705,882 		JBrowse link
G Rbm44 RNA binding motif protein 44 part_of IBA GO_Central GO_REF:0000033 NCBI chr 1:91,072,695...91,098,521
Ensembl chr 1:91,072,811...91,098,517 		JBrowse link
G Rbm8a RNA binding motif protein 8a part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:96,537,244...96,541,107
Ensembl chr 3:96,537,249...96,541,107 		JBrowse link
G Rbm8a2 RNA binding motif protein 8A2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:175,805,784...175,806,509
Ensembl chr 1:175,805,343...175,806,680 		JBrowse link
G Rbmx RNA binding motif protein, X chromosome part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr  X:56,428,708...56,438,405
Ensembl chr  X:56,428,890...56,438,396 		JBrowse link
G Sart1 squamous cell carcinoma antigen recognized by T cells 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:5,427,551...5,438,731
Ensembl chr19:5,427,551...5,438,731 		JBrowse link
G Sf3a1 splicing factor 3a, subunit 1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:4,110,354...4,132,541
Ensembl chr11:4,110,350...4,132,541 		JBrowse link
G Sf3a2 splicing factor 3a, subunit 2 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:80,634,569...80,640,756
Ensembl chr10:80,634,032...80,640,758 		JBrowse link
G Sf3a3 splicing factor 3a, subunit 3 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:124,602,966...124,626,234
Ensembl chr 4:124,608,569...124,626,253 		JBrowse link
G Sf3b1 splicing factor 3b, subunit 1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 1:55,024,328...55,066,660
Ensembl chr 1:55,024,328...55,066,640 		JBrowse link
G Sf3b2 splicing factor 3b, subunit 2 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr19:5,323,949...5,345,485
Ensembl chr19:5,323,960...5,345,483 		JBrowse link
G Sf3b3 splicing factor 3b, subunit 3 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:111,537,123...111,573,578
Ensembl chr 8:111,536,871...111,573,419 		JBrowse link
G Sf3b6 splicing factor 3B, subunit 6 part_of IBA GO_Central GO_REF:0000033 NCBI chr12:4,867,608...4,877,659
Ensembl chr12:4,867,544...4,877,659 		JBrowse link
G Slu7 SLU7 splicing factor homolog (S. cerevisiae) part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:43,324,550...43,338,809
Ensembl chr11:43,324,571...43,338,808 		JBrowse link
G Snrnp200 small nuclear ribonucleoprotein 200 (U5) part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:127,050,306...127,082,373
Ensembl chr 2:127,050,306...127,082,371 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein 40 (U5) part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:130,253,925...130,283,826
Ensembl chr 4:130,253,925...130,283,819 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:65,710,084...65,724,335
Ensembl chr 7:65,708,751...65,724,335 		JBrowse link
G Snrpb small nuclear ribonucleoprotein B part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323 		JBrowse link
G Snrpb2 U2 small nuclear ribonucleoprotein B part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:142,904,989...142,913,972
Ensembl chr 2:142,904,959...142,914,773 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr18:10,617,796...10,628,230
Ensembl chr18:10,617,775...10,642,079 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 7:18,883,370...18,886,659
Ensembl chr 7:18,883,647...18,887,467 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:75,353,852...75,371,300
Ensembl chr10:75,353,385...75,373,215 		JBrowse link
G Snrpe small nuclear ribonucleoprotein E part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:133,531,609...133,538,018
Ensembl chr 1:133,531,609...133,538,029 		JBrowse link
G Snrpert small nuclear ribonucleoprotein E, pseudogene part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:131,163,860...131,164,290
Ensembl chr 2:131,164,008...131,164,286 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr10:93,418,891...93,425,520
Ensembl chr10:93,418,891...93,425,568 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 6:86,348,522...86,355,884
Ensembl chr 6:86,348,286...86,356,310 		JBrowse link
G Snrpn small nuclear ribonucleoprotein N part_of IBA GO_Central GO_REF:0000033 NCBI chr 7:59,632,243...60,099,925
Ensembl chr 7:59,632,243...59,789,967 		JBrowse link
G Snw1 SNW domain containing 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:87,496,680...87,519,069
Ensembl chr12:87,495,845...87,519,044 		JBrowse link
G Srrm1 serine/arginine repetitive matrix 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:135,047,795...135,080,787
Ensembl chr 4:135,047,795...135,080,632 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:24,009,501...24,043,715
Ensembl chr17:24,009,506...24,043,715 		JBrowse link
G Srsf1 serine and arginine-rich splicing factor 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:87,937,325...87,944,583
Ensembl chr11:87,938,199...87,944,581 		JBrowse link
G Syf2 SYF2 homolog, RNA splicing factor (S. cerevisiae) part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 4:134,658,291...134,664,848
Ensembl chr 4:134,658,209...134,664,859 		JBrowse link
G Syncrip synaptotagmin binding, cytoplasmic RNA interacting protein part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:88,331,417...88,364,645
Ensembl chr 9:88,329,062...88,364,627 		JBrowse link
G Tfip11 tuftelin interacting protein 11 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:112,474,235...112,485,939
Ensembl chr 5:112,474,224...112,485,939 		JBrowse link
G U2af1 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:31,866,055...31,878,122
Ensembl chr17:31,866,055...31,877,866 		JBrowse link
G Wdr83 WD repeat domain containing 83 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 8:85,801,664...85,807,375
Ensembl chr 8:85,801,664...85,807,935 		JBrowse link
G Xab2 XPA binding protein 2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 8:3,660,089...3,671,311
Ensembl chr 8:3,658,421...3,671,316 		JBrowse link
G Zcchc8 zinc finger, CCHC domain containing 8 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 5:123,836,365...123,859,107
Ensembl chr 5:123,836,357...123,859,163 		JBrowse link
U2-type catalytic step 2 spliceosome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Aqr aquarius part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:113,931,642...114,005,788
Ensembl chr 2:113,931,651...114,017,505 		JBrowse link
G Bcas2 BCAS2 pre-mRNA processing factor part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:103,078,971...103,086,479
Ensembl chr 3:103,078,971...103,086,482 		JBrowse link
G Bud31 BUD31 homolog part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 5:145,077,186...145,084,888
Ensembl chr 5:145,077,172...145,084,888 		JBrowse link
G Cdc40 cell division cycle 40 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:40,707,617...40,759,139
Ensembl chr10:40,707,617...40,759,307 		JBrowse link
G Cdc5l cell division cycle 5-like part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:45,702,809...45,744,633
Ensembl chr17:45,702,810...45,744,663 		JBrowse link
G Cdc5lrt1 cell division cycle 5 like, retrotransposed 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,074,241...118,076,700
Ensembl chr10:118,074,277...118,076,685 		JBrowse link
G Cdc5lrt10 cell division cycle 5 like, retrotransposed 10 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,187,324...118,190,025
Ensembl chr10:118,187,602...118,190,010 		JBrowse link
G Cdc5lrt4 cell division cycle 5 like, retrotransposed 4 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,094,577...118,097,037
Ensembl chr10:118,094,593...118,097,001 		JBrowse link
G Cdc5lrt5 cell division cycle 5 like, retrotransposed 5 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,160,141...118,162,889
Ensembl chr10:118,160,466...118,162,874 		JBrowse link
G Cdc5lrt6 cell division cycle 5 like, retrotransposed 6 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,165,876...118,168,330
Ensembl chr10:118,165,905...118,168,313 		JBrowse link
G Cdc5lrt7 cell division cycle 5 like, retrotransposed 7 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,171,007...118,173,751
Ensembl chr10:118,171,328...118,173,736 		JBrowse link
G Cdc5lrt8 cell division cycle 5 like, retrotransposed 8 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,176,721...118,179,175
Ensembl chr10:118,176,752...118,179,160 		JBrowse link
G Cdc5lrt9 cell division cycle 5 like, retrotransposed 9 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:118,182,150...118,184,599
Ensembl chr10:118,182,176...118,184,584 		JBrowse link
G Crnkl1 crooked neck pre-mRNA splicing factor 1 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 2:145,759,402...145,776,620
Ensembl chr 2:145,759,399...145,776,934 		JBrowse link
G Cwc15 CWC15 spliceosome-associated protein part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 9:14,411,876...14,421,920
Ensembl chr 9:14,411,913...14,421,873 		JBrowse link
G Cwc22 CWC22 spliceosome-associated protein part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:77,706,312...77,776,705
Ensembl chr 2:77,711,503...77,776,719 		JBrowse link
G Cwc22rt1 CWC22 spliceosome-associated protein, retrotransposed 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,785,949...83,789,002
Ensembl chr 2:83,786,037...83,788,529 		JBrowse link
G Cwc22rt2 CWC22 spliceosome-associated protein, retrotransposed 2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,791,759...83,794,812
Ensembl chr 2:83,791,847...83,794,339 		JBrowse link
G Cwc22rt3 CWC22 spliceosome-associated protein, retrotransposed 3 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,797,569...83,800,622
Ensembl chr 2:83,797,657...83,800,149 		JBrowse link
G Cwc22rt4 CWC22 spliceosome-associated protein, retrotransposed 4 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,803,379...83,806,432
Ensembl chr 2:83,803,467...83,805,959 		JBrowse link
G Cwc22rt5 CWC22 spliceosome-associated protein, retrotransposed 5 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,809,189...83,812,242
Ensembl chr 2:83,809,277...83,811,769 		JBrowse link
G Cwc22rt6 CWC22 spliceosome-associated protein, retrotransposed 6 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,820,809...83,823,862
Ensembl chr 2:83,820,897...83,823,389 		JBrowse link
G Cwc22rt7 CWC22 spliceosome-associated protein, retrotransposed 7 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:83,814,999...83,818,052
Ensembl chr 2:83,815,087...83,817,579 		JBrowse link
G Dhx8 DEAH-box helicase 8 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:101,623,782...101,658,184
Ensembl chr11:101,623,745...101,658,184 		JBrowse link
G Eftud2 elongation factor Tu GTP binding domain containing 2 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr11:102,729,298...102,771,999
Ensembl chr11:102,729,299...102,771,811 		JBrowse link
G Plrg1 pleiotropic regulator 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 3:82,962,845...82,979,598
Ensembl chr 3:82,962,829...82,979,662 		JBrowse link
G Ppie peptidylprolyl isomerase E (cyclophilin E) part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:123,020,907...123,033,783
Ensembl chr 4:123,020,908...123,033,744 		JBrowse link
G Ppil1 peptidylprolyl isomerase (cyclophilin)-like 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:29,469,809...29,482,945
Ensembl chr17:29,469,777...29,483,160 		JBrowse link
G Prpf19 pre-mRNA processing factor 19 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr19:10,872,595...10,886,923
Ensembl chr19:10,872,595...10,886,923 		JBrowse link
G Prpf8 pre-mRNA processing factor 8 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr11:75,377,603...75,400,273
Ensembl chr11:75,377,642...75,400,275 		JBrowse link
G Rbm22 RNA binding motif protein 22 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr18:60,693,858...60,705,801
Ensembl chr18:60,693,808...60,705,882 		JBrowse link
G Snrnp40 small nuclear ribonucleoprotein 40 (U5) part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:130,253,925...130,283,826
Ensembl chr 4:130,253,925...130,283,819 		JBrowse link
G Snrpa1 small nuclear ribonucleoprotein polypeptide A' part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:65,710,084...65,724,335
Ensembl chr 7:65,708,751...65,724,335 		JBrowse link
G Snrpb small nuclear ribonucleoprotein B part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:130,013,560...130,031,184
Ensembl chr 2:130,013,555...130,021,323 		JBrowse link
G Snrpb2 U2 small nuclear ribonucleoprotein B part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:142,904,989...142,913,972
Ensembl chr 2:142,904,959...142,914,773 		JBrowse link
G Snrpd1 small nuclear ribonucleoprotein D1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr18:10,617,796...10,628,230
Ensembl chr18:10,617,775...10,642,079 		JBrowse link
G Snrpd2 small nuclear ribonucleoprotein D2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 7:18,883,370...18,886,659
Ensembl chr 7:18,883,647...18,887,467 		JBrowse link
G Snrpd3 small nuclear ribonucleoprotein D3 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:75,353,852...75,371,300
Ensembl chr10:75,353,385...75,373,215 		JBrowse link
G Snrpe small nuclear ribonucleoprotein E part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 1:133,531,609...133,538,018
Ensembl chr 1:133,531,609...133,538,029 		JBrowse link
G Snrpert small nuclear ribonucleoprotein E, pseudogene part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 2:131,163,860...131,164,290
Ensembl chr 2:131,164,008...131,164,286 		JBrowse link
G Snrpf small nuclear ribonucleoprotein polypeptide F part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr10:93,418,891...93,425,520
Ensembl chr10:93,418,891...93,425,568 		JBrowse link
G Snrpg small nuclear ribonucleoprotein polypeptide G part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 6:86,348,522...86,355,884
Ensembl chr 6:86,348,286...86,356,310 		JBrowse link
G Snw1 SNW domain containing 1 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr12:87,496,680...87,519,069
Ensembl chr12:87,495,845...87,519,044 		JBrowse link
G Srrm2 serine/arginine repetitive matrix 2 part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr17:24,009,501...24,043,715
Ensembl chr17:24,009,506...24,043,715 		JBrowse link
G Syf2 SYF2 homolog, RNA splicing factor (S. cerevisiae) part_of ISO MGI GO_REF:0000119 MGI:4834177 NCBI chr 4:134,658,291...134,664,848
Ensembl chr 4:134,658,209...134,664,859 		JBrowse link
G Tex16 testis expressed gene 16 part_of IBA GO_Central GO_REF:0000033 NCBI chr  X:110,804,655...111,159,053
Ensembl chr  X:111,148,746...111,153,549
Ensembl chr  X:111,148,746...111,153,549
Ensembl chr  X:111,148,746...111,153,549 		JBrowse link
G Xab2 XPA binding protein 2 part_of ISO
IBA		 MGI
GO_Central		 GO_REF:0000033 GO_REF:0000119 MGI:4834177 NCBI chr 8:3,660,089...3,671,311
Ensembl chr 8:3,658,421...3,671,316 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 28585
    protein-containing complex 6180
      catalytic complex 1801
        catalytic step 2 spliceosome 119
          U12-type catalytic step 2 spliceosome 0
          U2-type catalytic step 2 spliceosome 47
Path 2
Term Annotations click to browse term
  cellular_component 28585
    cellular anatomical entity 19620
      organelle 13555
        membrane-bounded organelle 12560
          intracellular membrane-bounded organelle 12012
            nucleus 7488
              nuclear protein-containing complex 1285
                spliceosomal complex 232
                  catalytic step 2 spliceosome 119
                    U12-type catalytic step 2 spliceosome 0
                    U2-type catalytic step 2 spliceosome 47
paths to the root