Rbmx (RNA binding motif protein, X chromosome) - Rat Genome Database

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Gene: Rbmx (RNA binding motif protein, X chromosome) Mus musculus
Analyze
Symbol: Rbmx
Name: RNA binding motif protein, X chromosome
RGD ID: 1558143
MGI Page MGI
Description: Predicted to enable several functions, including chromatin binding activity; identical protein binding activity; and nucleic acid binding activity. Predicted to be involved in several processes, including RNA metabolic process; cellular response to interleukin-1; and regulation of RNA metabolic process. Predicted to act upstream of or within RNA splicing and mRNA processing. Predicted to be located in extracellular exosome and nucleus. Predicted to be part of catalytic step 2 spliceosome; euchromatin; and supraspliceosomal complex. Predicted to be active in glutamatergic synapse and postsynaptic density. Is expressed in several structures, including central nervous system; female reproductive system; gut; sensory organ; and thymus. Human ortholog(s) of this gene implicated in X-linked mental retardation Gustavson type and syndromic X-linked intellectual disability Shashi type. Orthologous to human RBMX (RNA binding motif protein X-linked).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: heterogeneous nuclear ribonucleoprotein G; hnRNP G; RNA binding motif protein, X-linked; RNA-binding motif protein, X chromosome
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Related Pseudogenes: Gm7192   Gm9771  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X56,428,708 - 56,438,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX56,428,890 - 56,438,396 (-)EnsemblGRCm39 Ensembl
GRCm38X57,383,348 - 57,393,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX57,383,530 - 57,393,036 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X54,636,525 - 54,646,213 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,733,142 - 53,739,810 (-)NCBIMGSCv36mm8
CeleraX43,859,557 - 43,869,048 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX31.64NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',5,5'-tetrachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-diaminotoluene  (EXP)
2-butoxyethanol  (EXP)
3',5'-cyclic UMP  (ISO)
6-propyl-2-thiouracil  (ISO)
acetazolamide  (EXP)
acrolein  (ISO)
amitrole  (ISO)
aristolochic acid A  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
arsenous acid  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
bisphenol A  (EXP,ISO)
butanal  (ISO)
caffeine  (ISO)
carbamazepine  (ISO)
carbon nanotube  (EXP)
choline  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
diarsenic trioxide  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
fenthion  (EXP)
flutamide  (ISO)
folic acid  (EXP,ISO)
fructose  (ISO)
gentamycin  (ISO)
isoprenaline  (EXP)
ivermectin  (ISO)
L-methionine  (EXP)
lead(0)  (ISO)
menadione  (ISO)
methidathion  (EXP)
methimazole  (ISO)
methylparaben  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
Monobutylphthalate  (EXP)
ozone  (ISO)
paracetamol  (EXP,ISO)
PCB138  (EXP)
pentanal  (ISO)
phenobarbital  (ISO)
phenylmercury acetate  (ISO)
pirinixic acid  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
propanal  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP)
sodium arsenite  (EXP)
sulfadimethoxine  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
tetrachloromethane  (EXP)
tetraphene  (EXP)
thapsigargin  (ISO)
Tributyltin oxide  (EXP)
trichloroethene  (ISO)
valproic acid  (EXP,ISO)
Yessotoxin  (ISO)

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Proteomic analysis of in vivo-assembled pre-mRNA splicing complexes expands the catalog of participating factors. Chen YI, etal., Nucleic Acids Res. 2007;35(12):3928-44. Epub 2007 May 30.
2. Functional annotation of a full-length mouse cDNA collection. Kawai J, etal., Nature. 2001 Feb 8;409(6821):685-90.
3. MGDs mouse GO annotations MGD data from the GO Consortium
4. Analysis of the mouse transcriptome based on functional annotation of 60,770 full-length cDNAs. Okazaki Y, etal., Nature. 2002 Dec 5;420(6915):563-73.
5. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
6. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
7. Mouse MP Annotation Import Pipeline RGD automated import pipeline
8. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
9. The spliceosome: design principles of a dynamic RNP machine. Wahl MC, etal., Cell. 2009 Feb 20;136(4):701-18. doi: 10.1016/j.cell.2009.02.009.
10. Expression of RBMX after spinal cord injury in rats. Zhang J, etal., J Mol Neurosci. 2013 Feb;49(2):417-29. doi: 10.1007/s12031-012-9914-2. Epub 2012 Nov 22.
Additional References at PubMed
PMID:10349636   PMID:10391207   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11544199   PMID:12477932   PMID:14762062   PMID:15782199   PMID:16033648   PMID:16141072   PMID:16141073  
PMID:16919269   PMID:17188681   PMID:17967808   PMID:18799693   PMID:18973680   PMID:19403048   PMID:21677750   PMID:21873635   PMID:23665500   PMID:24194600   PMID:26265008   PMID:27626380  
PMID:27746211   PMID:28378742   PMID:28634551   PMID:30196744   PMID:30335684   PMID:30973865   PMID:31138677   PMID:32098917   PMID:32325033   PMID:34458856  


Genomics

Comparative Map Data
Rbmx
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X56,428,708 - 56,438,405 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX56,428,890 - 56,438,396 (-)EnsemblGRCm39 Ensembl
GRCm38X57,383,348 - 57,393,046 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX57,383,530 - 57,393,036 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X54,636,525 - 54,646,213 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X53,733,142 - 53,739,810 (-)NCBIMGSCv36mm8
CeleraX43,859,557 - 43,869,048 (-)NCBICelera
Cytogenetic MapXA6NCBI
cM MapX31.64NCBI
RBMX
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X136,869,192 - 136,880,725 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX136,848,004 - 136,880,764 (-)EnsemblGRCh38hg38GRCh38
GRCh37X135,951,351 - 135,962,884 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X135,783,285 - 135,790,605 (-)NCBINCBI36Build 36hg18NCBI36
Build 34X135,681,138 - 135,688,459NCBI
CeleraX136,315,008 - 136,326,547 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX125,221,196 - 125,232,578 (-)NCBIHuRef
CHM1_1X135,863,032 - 135,874,620 (-)NCBICHM1_1
T2T-CHM13v2.0X135,177,914 - 135,189,452 (-)NCBIT2T-CHM13v2.0
Rbmx
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X140,342,544 - 140,352,121 (-)NCBIGRCr8
mRatBN7.2X135,305,237 - 135,314,806 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX135,305,325 - 135,314,743 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX137,505,126 - 137,511,592 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X141,062,859 - 141,069,326 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X138,632,261 - 138,638,728 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X159,881,835 - 159,891,405 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX159,884,885 - 159,891,326 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X154,508,654 - 154,518,218 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X142,112,807 - 142,119,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX143,341,911 - 143,347,131 (-)NCBICelera
Cytogenetic MapXq36NCBI
Rbmx
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554898,280,794 - 8,286,252 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554898,280,842 - 8,286,252 (+)NCBIChiLan1.0ChiLan1.0
RBMX
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X136,287,749 - 136,299,314 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X136,295,612 - 136,302,914 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X125,997,989 - 126,009,525 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X136,264,406 - 136,275,360 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX136,264,406 - 136,275,360 (-)Ensemblpanpan1.1panPan2
RBMX
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X107,173,599 - 107,182,404 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX107,175,634 - 107,182,347 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX92,994,761 - 93,003,581 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X109,152,874 - 109,161,692 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX109,152,889 - 109,161,685 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X106,293,550 - 106,302,363 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X108,485,256 - 108,494,069 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X108,127,392 - 108,136,215 (-)NCBIUU_Cfam_GSD_1.0
Rbmx
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X105,172,114 - 105,184,736 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493651310,429,824 - 10,437,108 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493651310,429,862 - 10,442,509 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RBMX
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX111,962,633 - 111,974,472 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X111,965,859 - 111,974,544 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X127,896,442 - 127,905,102 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RBMX
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X111,880,859 - 111,892,660 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366606549,555,769 - 49,587,076 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rbmx
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462480810,176,293 - 10,182,079 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462480810,176,695 - 10,185,847 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rbmx
242 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1920
Count of miRNA genes:758
Interacting mature miRNAs:982
Transcripts:ENSMUST00000098470, ENSMUST00000114726, ENSMUST00000114730, ENSMUST00000133346, ENSMUST00000140384, ENSMUST00000143310
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357433Dbts2_mdiabetes 2 (mouse)Not determinedX7226295150107038Mouse
13208553Wght11_mweight 11 (mouse)X1186623959045360Mouse
13208557Lgth13_mbody length 13 (mouse)X1186623959045360Mouse
27226780Femd12_mfemur midshaft diameter 12, 16 week (mouse)X3466365356845360Mouse
13208567Bmiq12_mbody mass index QTL 12 (mouse)X3526365377043606Mouse
1301009Pbwg7_mpostnatal body weight growth 7 (mouse)Not determinedX3911371473113814Mouse
4141565Pbwg21_mpostnatal body weight growth 21 (mouse)Not determinedX3911371473113814Mouse
1300794Spha2_msperm head anomaly 2 (mouse)Not determinedX3992149886260137Mouse
4142200Rtwq1_mreduced testis weight QTL 1 (mouse)Not determined4147706075477203Mouse
1301278Bdln1_mbody length 1 (mouse)Not determinedX4170210675702218Mouse
1300702Fcsa4_mfemoral cross-sectional area 4 (mouse)Not determinedX4602744480027567Mouse
4141630Gct6_mgranulosa cell tumorigenesis 6 (mouse)Not determined47179121129764756Mouse
1301351Obq6_mobesity QTL 6 (mouse)Not determinedX5077237570434751Mouse
25314311Syncl3_msynaptonemal complex length 3 (mouse)X5198887789743606Mouse
4142286Pubt1_mpubertal timing 1 (mouse)Not determined5241220061880496Mouse
4141126Lvic5_mliver iron content 5 (mouse)Not determined5241220063027567Mouse
13824980Ferq1_mgenetic fertility QTL 1 (mouse)X54045360148782996Mouse
10412108Desp5_mdespair 5 (mouse)Not determinedX5472235188722351Mouse

Markers in Region
Rbmx  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38398,189,972 - 98,190,566UniSTSGRCm38
MGSCv37397,993,895 - 97,994,489UniSTSGRCm37
Celera399,589,187 - 99,589,781UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic MapXA5UniSTS
cM MapX UniSTS
UniSTS:238029  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X57,383,729 - 57,383,858UniSTSGRCm38
MGSCv37X54,636,906 - 54,637,035UniSTSGRCm37
CeleraX43,859,938 - 43,860,067UniSTS
Cytogenetic MapXA5UniSTS
MARC_10315-10316:998935409:1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X57,390,103 - 57,391,319UniSTSGRCm38
GRCm38398,190,784 - 98,190,965UniSTSGRCm38
MGSCv37397,994,707 - 97,994,888UniSTSGRCm37
MGSCv37X54,643,280 - 54,644,496UniSTSGRCm37
Celera399,589,999 - 99,590,180UniSTS
CeleraX43,866,317 - 43,867,331UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic MapXA5UniSTS
G42696  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38X57,387,520 - 57,387,607UniSTSGRCm38
MGSCv37X54,640,697 - 54,640,784UniSTSGRCm37
CeleraX43,863,729 - 43,863,816UniSTS
Cytogenetic MapXA5UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001425953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001425954 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_011252 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_029425 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_189638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161864 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036161865 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AJ237846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ237847 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK004162 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK008618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK013977 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK032846 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK083899 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK087940 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK135164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK165006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK178027 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK180208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK207357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK211002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL672106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC003710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY279114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466583 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK619886 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000098470   ⟹   ENSMUSP00000096070
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX56,431,390 - 56,438,396 (-)Ensembl
GRCm38.p6 EnsemblX57,386,030 - 57,393,036 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114726   ⟹   ENSMUSP00000110374
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX56,431,722 - 56,438,396 (-)Ensembl
GRCm38.p6 EnsemblX57,386,362 - 57,393,036 (-)Ensembl
RefSeq Acc Id: ENSMUST00000114730   ⟹   ENSMUSP00000110378
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX56,431,718 - 56,438,322 (-)Ensembl
GRCm38.p6 EnsemblX57,386,358 - 57,392,962 (-)Ensembl
RefSeq Acc Id: ENSMUST00000133346   ⟹   ENSMUSP00000118121
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX56,435,503 - 56,438,157 (-)Ensembl
GRCm38.p6 EnsemblX57,390,143 - 57,392,797 (-)Ensembl
RefSeq Acc Id: ENSMUST00000140384   ⟹   ENSMUSP00000125720
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX56,428,890 - 56,438,341 (-)Ensembl
GRCm38.p6 EnsemblX57,383,530 - 57,392,981 (-)Ensembl
RefSeq Acc Id: ENSMUST00000143310   ⟹   ENSMUSP00000138198
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 EnsemblX56,432,276 - 56,438,380 (-)Ensembl
GRCm38.p6 EnsemblX57,386,916 - 57,393,020 (-)Ensembl
RefSeq Acc Id: NM_001166623   ⟹   NP_001160095
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,431,718 - 56,438,341 (-)NCBI
GRCm38X57,386,030 - 57,393,036 (-)NCBI
MGSCv37X54,636,525 - 54,646,213 (-)RGD
CeleraX43,859,557 - 43,869,048 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001425953   ⟹   NP_001412882
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,431,718 - 56,438,341 (-)NCBI
RefSeq Acc Id: NM_001425954   ⟹   NP_001412883
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,431,718 - 56,438,341 (-)NCBI
RefSeq Acc Id: NM_011252   ⟹   NP_035382
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,431,718 - 56,438,341 (-)NCBI
GRCm38X57,386,030 - 57,393,036 (-)NCBI
MGSCv37X54,636,525 - 54,646,213 (-)RGD
CeleraX43,859,557 - 43,869,048 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_029425
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,428,708 - 56,438,341 (-)NCBI
GRCm38X57,383,348 - 57,393,036 (-)NCBI
MGSCv37X54,636,525 - 54,646,213 (-)RGD
CeleraX43,859,557 - 43,869,048 (-)RGD
cM MapX ENTREZGENE
Sequence:
RefSeq Acc Id: NR_189635
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,428,708 - 56,438,341 (-)NCBI
RefSeq Acc Id: NR_189636
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,428,708 - 56,438,341 (-)NCBI
RefSeq Acc Id: NR_189637
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,428,708 - 56,438,341 (-)NCBI
RefSeq Acc Id: NR_189638
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,428,708 - 56,438,341 (-)NCBI
RefSeq Acc Id: XM_036161864   ⟹   XP_036017757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,428,889 - 56,438,405 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036161865   ⟹   XP_036017758
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39X56,428,889 - 56,438,397 (-)NCBI
Sequence:
RefSeq Acc Id: NP_035382   ⟸   NM_011252
- UniProtKB: Q8C2U6 (UniProtKB/Swiss-Prot),   Q9R0Y0 (UniProtKB/Swiss-Prot),   Q9WV02 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001160095   ⟸   NM_001166623
- UniProtKB: Q8C2U6 (UniProtKB/Swiss-Prot),   Q9R0Y0 (UniProtKB/Swiss-Prot),   Q9WV02 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSMUSP00000138198   ⟸   ENSMUST00000143310
RefSeq Acc Id: ENSMUSP00000118121   ⟸   ENSMUST00000133346
RefSeq Acc Id: ENSMUSP00000125720   ⟸   ENSMUST00000140384
RefSeq Acc Id: ENSMUSP00000110374   ⟸   ENSMUST00000114726
RefSeq Acc Id: ENSMUSP00000110378   ⟸   ENSMUST00000114730
RefSeq Acc Id: ENSMUSP00000096070   ⟸   ENSMUST00000098470
RefSeq Acc Id: XP_036017757   ⟸   XM_036161864
- Peptide Label: isoform X1
- UniProtKB: Q9WV02 (UniProtKB/Swiss-Prot),   Q8C2U6 (UniProtKB/Swiss-Prot),   Q9R0Y0 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_036017758   ⟸   XM_036161865
- Peptide Label: isoform X1
- UniProtKB: Q9WV02 (UniProtKB/Swiss-Prot),   Q8C2U6 (UniProtKB/Swiss-Prot),   Q9R0Y0 (UniProtKB/Swiss-Prot),   A0A2I3BRL8 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001412882   ⟸   NM_001425953
- UniProtKB: Q9WV02 (UniProtKB/Swiss-Prot),   Q9R0Y0 (UniProtKB/Swiss-Prot),   Q8C2U6 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001412883   ⟸   NM_001425954
- UniProtKB: Q9WV02 (UniProtKB/Swiss-Prot),   Q9R0Y0 (UniProtKB/Swiss-Prot),   Q8C2U6 (UniProtKB/Swiss-Prot)
Protein Domains
RBM1CTR   RRM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9WV02-F1-model_v2 AlphaFold Q9WV02 1-391 view protein structure

Promoters
RGD ID:6846260
Promoter ID:MM_KWN:60422
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000098470,   ENSMUST00000114730,   NM_001166623,   NM_011252,   NR_029425,   OTTMUST00000043155,   OTTMUST00000043158,   UC009THH.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36X54,645,776 - 54,646,422 (-)MPROMDB
RGD ID:13680562
Promoter ID:EPDNEW_M24430
Type:initiation region
Name:Rbmx_1
Description:Mus musculus RNA binding motif protein, X chromosome , transcriptvariant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38X57,392,981 - 57,393,041EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1343044 AgrOrtholog
Ensembl Genes ENSMUSG00000031134 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098470.9 UniProtKB/TrEMBL
  ENSMUST00000114726 ENTREZGENE
  ENSMUST00000114726.8 UniProtKB/Swiss-Prot
  ENSMUST00000114730 ENTREZGENE
  ENSMUST00000114730.8 UniProtKB/Swiss-Prot
  ENSMUST00000133346.2 UniProtKB/TrEMBL
  ENSMUST00000140384.8 UniProtKB/Swiss-Prot
  ENSMUST00000143310.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.330 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleotide-bd_a/b_plait_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBD_domain_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RBM1CTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_dom_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:19655 UniProtKB/Swiss-Prot
MGD MGI:1343044 ENTREZGENE
NCBI Gene 19655 ENTREZGENE
PANTHER RNA-BINDING MOTIF PROTEIN, X CHROMOSOME UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RBM1CTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB RBMX RGD
PhenoGen Rbmx PhenoGen
PROSITE RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RRM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  RRM_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF54928 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A2I3BRL8 ENTREZGENE
  A2AFI3_MOUSE UniProtKB/TrEMBL
  A2AFI4_MOUSE UniProtKB/TrEMBL
  Q8C2U6 ENTREZGENE
  Q9R0Y0 ENTREZGENE
  Q9WV02 ENTREZGENE, UniProtKB/Swiss-Prot
  S4R1F6_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q8C2U6 UniProtKB/Swiss-Prot
  Q9R0Y0 UniProtKB/Swiss-Prot