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ONTOLOGY REPORT - ANNOTATIONS


Term:PML body
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Accession:GO:0016605 term browser browse the term
Definition:A class of nuclear body; they react against SP100 auto-antibodies (PML, promyelocytic leukemia); cells typically contain 10-30 PML bodies per nucleus; alterations in the localization of PML bodies occurs after viral infection.
Synonyms:exact_synonym: ND10;   PML NB;   PML nuclear body
 related_synonym: nuclear dot
 only_in_taxon: NCBITaxon:6072 ! Eumetazoa


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PML body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ANKRD2 ankyrin repeat domain 2 located_in ISO (PMID:24434510) MGI PMID:24434510 NCBI chr 9:90,733,138...90,745,872 JBrowse link
G ATR ATR serine/threonine kinase located_in ISO (PMID:12814551) UniProt PMID:12814551 NCBI chr15:48,048,785...48,173,120
Ensembl chr15:48,048,882...48,173,137
JBrowse link
G ATRX ATRX chromatin remodeler located_in ISO (MGI:5705215|PMID:23444137) BHF-UCL PMID:23444137 MGI:5705215 NCBI chr  X:66,449,830...66,737,220
Ensembl chr  X:66,448,449...66,737,164
JBrowse link
G BASP1 brain abundant membrane attached signal protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:16,871,488...16,937,685
Ensembl chr 4:16,936,178...16,936,858
JBrowse link
G BLM BLM RecQ like helicase located_in ISO (PMID:10728666), (PMID:10779560) UniProt PMID:10728666 PMID:10779560 NCBI chr29:9,046,485...9,152,320
Ensembl chr29:9,045,373...9,152,254
JBrowse link
G BMAL1 basic helix-loop-helix ARNT like 1 located_in IEA UniProt GO_REF:0000044 NCBI chr 1:51,430,670...51,540,344
Ensembl chr 1:51,431,180...51,462,674
JBrowse link
G CALCOCO2 calcium binding and coiled-coil domain 2 located_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr16:69,242,720...69,274,364
Ensembl chr16:69,251,963...69,273,384
JBrowse link
G CASP8AP2 caspase 8 associated protein 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr13:14,586,857...14,632,384
Ensembl chr13:14,586,929...14,632,362
JBrowse link
G CBX5 chromobox 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:50,350,440...50,396,595
Ensembl chr11:50,353,638...50,396,608
JBrowse link
G CDK9 cyclin dependent kinase 9 located_in ISO (PMID:18250157) UniProt PMID:18250157 NCBI chr12:10,342,240...10,346,792
Ensembl chr12:10,342,801...10,346,502
JBrowse link
G CHD3 chromodomain helicase DNA binding protein 3 located_in ISO (PMID:27068747) UniProt PMID:27068747 NCBI chr16:7,274,634...7,300,831
Ensembl chr16:7,276,850...7,300,832
JBrowse link
G CHEK2 checkpoint kinase 2 located_in ISO (PMID:12402044) UniProt PMID:12402044 NCBI chr19:11,567,529...11,621,180
Ensembl chr19:11,567,528...11,604,792
JBrowse link
G CHFR checkpoint with forkhead and ring finger domains located_in IEA UniProt GO_REF:0000044 NCBI chr11:128,175,768...128,207,710
Ensembl chr11:128,175,515...128,207,443
JBrowse link
G CIITA class II major histocompatibility complex transactivator located_in ISO (PMID:23007646) UniProt PMID:23007646 NCBI chr 5:10,341,690...10,401,988
Ensembl chr 5:10,372,344...10,400,451
JBrowse link
G CSNK2A1 casein kinase 2 alpha 1 is_active_in ISO (PMID:20719947) UniProt PMID:20719947 NCBI chr 2:55,982,259...56,047,023 JBrowse link
G CSNK2B casein kinase 2 beta located_in
is_active_in
IEA
ISO
(PMID:20719947) Ensembl
UniProt
PMID:20719947 GO_REF:0000107 NCBI chr17:40,354,520...40,359,136
Ensembl chr17:40,352,367...40,358,401
JBrowse link
G DAPK3 death associated protein kinase 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:3,713,179...3,729,223
Ensembl chr 6:3,712,170...3,727,929
JBrowse link
G DAXX death domain associated protein located_in IEA Ensembl
TreeGrafter
UniProt
GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chr17:38,754,227...38,758,714
Ensembl chr17:38,754,280...38,759,071
JBrowse link
G EIF3E eukaryotic translation initiation factor 3 subunit E located_in IEA UniProt GO_REF:0000044 NCBI chr 8:102,915,111...102,960,669
Ensembl chr 8:102,915,252...102,960,559
JBrowse link
G ELF4 E74 like ETS transcription factor 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:105,321,440...105,366,489
Ensembl chr  X:105,320,952...105,337,560
JBrowse link
G GCNA germ cell nuclear acidic peptidase located_in ISO (PMID:30914427) UniProt PMID:30914427 NCBI chr  X:61,395,585...61,428,773 JBrowse link
G HIPK1 homeodomain interacting protein kinase 1 located_in IEA Ensembl
TreeGrafter
GO_REF:0000107 GO_REF:0000118 NCBI chr20:19,680,952...19,731,503
Ensembl chr20:19,680,778...19,730,129
JBrowse link
G HIPK2 homeodomain interacting protein kinase 2 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr21:108,310,782...108,533,274
Ensembl chr21:108,322,096...108,533,226
JBrowse link
G HIPK3 homeodomain interacting protein kinase 3 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr 1:31,944,760...32,009,328
Ensembl chr 1:31,944,749...32,009,297
JBrowse link
G HSF1 heat shock transcription factor 1 located_in ISO (PMID:11514557) UniProt PMID:11514557 NCBI chr 8:138,503,836...138,529,562
Ensembl chr 8:138,503,831...138,529,165
JBrowse link
G IKBKE inhibitor of nuclear factor kappa B kinase subunit epsilon located_in IEA Ensembl GO_REF:0000107 NCBI chr25:22,865,720...22,892,346
Ensembl chr25:22,865,734...22,891,920
JBrowse link
G ISG20 interferon stimulated exonuclease gene 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr29:7,178,118...7,195,460
Ensembl chr29:7,178,769...7,196,387
JBrowse link
G KAT6A lysine acetyltransferase 6A located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:39,912,120...40,035,776
Ensembl chr 8:39,911,776...39,962,735
JBrowse link
G KLHL20 kelch like family member 20 located_in IEA Ensembl GO_REF:0000107 NCBI chr25:55,407,648...55,473,195
Ensembl chr25:55,405,713...55,473,175
JBrowse link
G LOC103215904 small ubiquitin-related modifier 1-like located_in IEA TreeGrafter
UniProt
GO_REF:0000044 GO_REF:0000118 NCBI chr 9:48,155,889...48,156,881 JBrowse link
G LOC103224824 small ubiquitin-related modifier 1-like located_in IEA TreeGrafter
UniProt
GO_REF:0000044 GO_REF:0000118 NCBI chr20:81,494,509...81,496,031 JBrowse link
G LOC103231594 brain acid soluble protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:11,075,901...11,077,476
Ensembl chr 4:16,936,178...16,936,858
JBrowse link
G LOC103244039 small ubiquitin-related modifier 5 located_in IEA UniProt
TreeGrafter
GO_REF:0000044 GO_REF:0000118 NCBI chr 2:10,164,883...10,165,860 JBrowse link
G LOC119620934 E3 ubiquitin-protein ligase RNF4-like located_in IEA TreeGrafter GO_REF:0000118
G LRCH4 leucine rich repeats and calponin homology domain containing 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr28:12,627,666...12,639,312
Ensembl chr28:12,627,712...12,638,228
JBrowse link
G MAPK7 mitogen-activated protein kinase 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:17,962,827...17,969,027
Ensembl chr16:17,964,408...17,968,714
JBrowse link
G MAX MYC associated factor X ISO RGD PMID:15503302 RGD:2316819 NCBI chr24:42,288,891...42,314,711
Ensembl chr24:42,291,106...42,314,605
JBrowse link
G MLIP muscular LMNA interacting protein located_in IEA Ensembl GO_REF:0000107 NCBI chr17:17,254,118...17,512,265
Ensembl chr17:17,252,186...17,503,406
JBrowse link
G MORC3 MORC family CW-type zinc finger 3 is_active_in
located_in
ISO
IEA
(PMID:27440897) UniProt
TreeGrafter
PMID:27440897 GO_REF:0000118 NCBI chr 2:80,316,047...80,370,971
Ensembl chr 2:80,315,940...80,374,457
JBrowse link
G MRE11 MRE11 homolog, double strand break repair nuclease located_in ISO (MGI:5705215|PMID:23444137)
(PMID:10811102)
BHF-UCL PMID:10811102 PMID:23444137 MGI:5705215 NCBI chr 1:85,615,448...85,694,247
Ensembl chr 1:85,610,819...85,694,269
JBrowse link
G MTOR mechanistic target of rapamycin kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr20:120,522,667...120,678,988
Ensembl chr20:120,525,737...120,679,020
JBrowse link
G N4BP1 NEDD4 binding protein 1 located_in IEA Ensembl
UniProt
TreeGrafter
GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chr 5:34,351,845...34,423,152
Ensembl chr 5:34,347,979...34,422,887
JBrowse link
G NBN nibrin located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:85,017,807...85,069,219
Ensembl chr 8:85,015,752...85,069,028
JBrowse link
G NR2C1 nuclear receptor subfamily 2 group C member 1 located_in IEA UniProt GO_REF:0000044 NCBI chr11:90,430,307...90,481,269
Ensembl chr11:90,430,194...90,481,493
JBrowse link
G NSMCE2 NSE2 (MMS21) homolog, SMC5-SMC6 complex SUMO ligase located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:119,679,090...119,949,212
Ensembl chr 8:119,691,106...119,949,587
JBrowse link
G PARK7 Parkinsonism associated deglycase located_in IEA Ensembl GO_REF:0000107 NCBI chr20:123,776,084...123,808,031
Ensembl chr20:123,776,297...123,798,434
JBrowse link
G PATL1 PAT1 homolog 1, processing body mRNA decay factor located_in IEA UniProt GO_REF:0000044 NCBI chr 1:13,955,730...13,989,364
Ensembl chr 1:13,957,050...13,988,488
JBrowse link
G PIAS1 protein inhibitor of activated STAT 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr26:15,294,296...15,432,731
Ensembl chr26:15,297,934...15,432,659
JBrowse link
G PIAS2 protein inhibitor of activated STAT 2 located_in ISO (PMID:22406621) UniProt PMID:22406621 NCBI chr18:33,967,894...34,075,824
Ensembl chr18:33,967,999...34,067,910
JBrowse link
G PML PML nuclear body scaffold located_in IEA TreeGrafter GO_REF:0000118 NCBI chr26:9,441,998...9,494,949
Ensembl chr26:9,451,112...9,494,931
JBrowse link
G PPARGC1A PPARG coactivator 1 alpha located_in IEA UniProt GO_REF:0000044 NCBI chr27:25,882,385...26,563,530
Ensembl chr27:26,465,499...26,564,582
JBrowse link
G PTEN phosphatase and tensin homolog located_in IEA UniProt GO_REF:0000044 GO_REF:0000104 NCBI chr 9:81,308,058...81,412,386
Ensembl chr 9:81,309,099...81,409,146
JBrowse link
G RAD51 RAD51 recombinase located_in IEA Ensembl GO_REF:0000107 NCBI chr26:42,281,085...42,319,394
Ensembl chr26:42,279,608...42,318,169
JBrowse link
G RB1 RB transcriptional corepressor 1 located_in ISO (PMID:9448006) UniProt PMID:9448006 NCBI chr 3:26,220,783...26,393,671
Ensembl chr 3:26,220,803...26,394,546
JBrowse link
G RFWD3 ring finger and WD repeat domain 3 located_in IEA UniProt GO_REF:0000044 NCBI chr 5:53,045,408...53,092,214
Ensembl chr 5:53,045,465...53,092,494
JBrowse link
G RNF111 ring finger protein 111 located_in IEA UniProt GO_REF:0000044 NCBI chr26:24,416,946...24,528,989
Ensembl chr26:24,416,093...24,528,862
JBrowse link
G RNF4 ring finger protein 4 located_in IEA TreeGrafter GO_REF:0000118 NCBI chr27:46,245,786...46,290,671 JBrowse link
G RNF6 ring finger protein 6 located_in ISO (PMID:11971979) MGI PMID:11971979 NCBI chr 3:5,461,053...5,471,268
Ensembl chr 3:5,462,126...5,468,555
JBrowse link
G RPA1 replication protein A1 located_in IEA Ensembl
UniProt
GO_REF:0000044 GO_REF:0000107 NCBI chr16:1,470,375...1,537,603
Ensembl chr16:1,470,474...1,539,246
JBrowse link
G RPA2 replication protein A2 located_in ISO (PMID:12814551), (PMID:17959650) UniProt PMID:12814551 PMID:17959650 NCBI chr20:104,882,739...104,904,612 JBrowse link
G RPA2 replication protein A2 located_in IEA Ensembl GO_REF:0000107 Ensembl chr20:104,883,027...104,904,951 JBrowse link
G RPAIN RPA interacting protein located_in IEA TreeGrafter GO_REF:0000118 NCBI chr16:4,829,096...4,843,302
Ensembl chr16:4,829,248...4,846,415
JBrowse link
G SATB1 SATB homeobox 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:63,163,989...63,263,122
Ensembl chr15:63,170,243...63,263,149
JBrowse link
G SENP2 SUMO specific peptidase 2 located_in ISO (MGI:2670563|PMID:12419228) UniProt PMID:12419228 MGI:2670563 NCBI chr15:3,805,916...3,853,529 JBrowse link
G SIMC1 SUMO interacting motifs containing 1 located_in ISO (PMID:36373674) UniProt PMID:36373674 NCBI chr23:78,255,678...78,345,307
Ensembl chr23:78,255,754...78,344,759
JBrowse link
G SIRT1 sirtuin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:63,463,059...63,497,893
Ensembl chr 9:63,462,389...63,497,867
JBrowse link
G SKI SKI proto-oncogene located_in IEA Ensembl GO_REF:0000107 NCBI chr20:129,243,033...129,324,162
Ensembl chr20:129,242,445...129,324,138
JBrowse link
G SKIL SKI like proto-oncogene located_in ISO (PMID:19383336) UniProt PMID:19383336 NCBI chr15:19,022,167...19,059,117
Ensembl chr15:19,022,017...19,057,004
JBrowse link
G SLF2 SMC5-SMC6 complex localization factor 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:93,919,373...93,983,499
Ensembl chr 9:93,931,456...93,980,297
JBrowse link
G SMC5 structural maintenance of chromosomes 5 located_in ISO (MGI:5819345|PMID:19793919)
(PMID:17589526), (PMID:36373674)
BHF-UCL
UniProt
PMID:17589526 PMID:19793919 PMID:36373674 MGI:5819345 NCBI chr12:81,317,689...81,426,196 JBrowse link
G SMC6 structural maintenance of chromosomes 6 located_in ISO (PMID:17589526), (PMID:36373674) UniProt PMID:17589526 PMID:36373674 NCBI chr14:89,917,621...90,005,604
Ensembl chr14:89,917,518...90,000,088
JBrowse link
G SP100 SP100 nuclear antigen located_in IEA Ensembl GO_REF:0000107 NCBI chr10:116,454,261...116,587,093
Ensembl chr10:116,459,050...116,590,215
JBrowse link
G SPTBN4 spectrin beta, non-erythrocytic 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:34,926,413...35,036,611
Ensembl chr 6:34,930,519...35,035,719
JBrowse link
G SQSTM1 sequestosome 1 located_in ISO (PMID:20168092) UniProt PMID:20168092 NCBI chr23:81,536,271...81,571,061
Ensembl chr23:81,558,082...81,574,830
JBrowse link
G SRSF2 serine and arginine rich splicing factor 2 NOT|located_in ISO (PMID:15652350) UniProt PMID:15652350 NCBI chr16:44,945,193...44,948,496
Ensembl chr16:44,945,200...44,946,438
JBrowse link
G SUMO1 small ubiquitin like modifier 1 located_in IEA UniProt
TreeGrafter
GO_REF:0000044 GO_REF:0000118 NCBI chr10:87,917,324...87,957,152 JBrowse link
G SUMO2 small ubiquitin like modifier 2 located_in ISO (PMID:22406621), (PMID:27068747) UniProt PMID:22406621 PMID:27068747 NCBI chr16:46,479,399...46,495,591
Ensembl chr16:46,479,406...46,496,114
JBrowse link
G SUMO3 small ubiquitin like modifier 3 located_in ISO (PMID:19050011), (PMID:27068747) UniProt PMID:19050011 PMID:27068747 NCBI chr 2:88,516,906...88,529,098 JBrowse link
G TDG thymine DNA glycosylase located_in ISO (PMID:15569683) MGI PMID:15569683 NCBI chr11:99,168,051...99,191,168
Ensembl chr11:99,181,608...99,193,591
JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 located_in IEA UniProt
TreeGrafter
Ensembl
GO_REF:0000044 GO_REF:0000107 GO_REF:0000118 NCBI chr17:47,582,857...47,599,871
Ensembl chr17:47,583,014...47,600,628
JBrowse link
G TERT telomerase reverse transcriptase located_in IEA Ensembl
UniProt
GO_REF:0000044 GO_REF:0000107 NCBI chr 4:1,082,894...1,119,373
Ensembl chr 4:1,083,384...1,117,468
JBrowse link
G TOP3A DNA topoisomerase III alpha located_in IEA Ensembl GO_REF:0000107 NCBI chr16:17,315,466...17,358,863
Ensembl chr16:17,316,048...17,358,580
JBrowse link
G TOPBP1 DNA topoisomerase II binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:56,679,333...56,740,773
Ensembl chr15:56,679,426...56,741,566
JBrowse link
G TOPORS TOP1 binding arginine/serine rich protein, E3 ubiquitin ligase located_in IEA Ensembl GO_REF:0000107 NCBI chr12:47,702,638...47,714,309
Ensembl chr12:47,702,995...47,714,338
JBrowse link
G TP53 tumor protein p53 located_in IEA UniProt
Ensembl
GO_REF:0000044 GO_REF:0000107 NCBI chr16:7,047,686...7,065,567
Ensembl chr16:7,045,146...7,066,223
JBrowse link
G TRIM16 tripartite motif containing 16 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:14,874,159...14,897,958
Ensembl chr16:14,871,657...14,897,865
JBrowse link
G TRIM8 tripartite motif containing 8 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:95,671,622...95,686,701
Ensembl chr 9:95,672,648...95,689,247
JBrowse link
G UBE2I ubiquitin conjugating enzyme E2 I located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:1,203,513...1,216,662
Ensembl chr 5:1,200,018...1,216,741
JBrowse link
G USP7 ubiquitin specific peptidase 7 located_in
is_active_in
IEA
ISO
(PMID:20719947) Ensembl
UniProt
PMID:20719947 GO_REF:0000107 NCBI chr 5:8,470,137...8,540,736
Ensembl chr 5:8,469,230...8,540,770
JBrowse link
G WDFY3 WD repeat and FYVE domain containing 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:33,031,762...33,331,475
Ensembl chr 7:33,030,069...33,237,701
JBrowse link
G ZBED1 zinc finger BED-type containing 1 located_in ISO (PMID:25210186), (PMID:27068747) UniProt PMID:25210186 PMID:27068747 NCBI chr  X:603,749...618,949
Ensembl chr  X:605,953...608,037
JBrowse link
G ZBTB16 zinc finger and BTB domain containing 16 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:105,446,067...105,648,771
Ensembl chr 1:105,449,994...105,643,344
JBrowse link
G ZCCHC12 zinc finger CCHC-type containing 12 located_in ISO (PMID:19416967) MGI PMID:19416967
G ZMYM2 zinc finger MYM-type containing 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:890,747...1,018,558
Ensembl chr 3:893,857...1,017,283
JBrowse link
G ZNF451 zinc finger protein 451 located_in IEA Ensembl GO_REF:0000107 NCBI chr17:14,434,878...14,516,914
Ensembl chr17:14,433,977...14,516,788
JBrowse link

Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 17755
    cellular anatomical entity 17660
      nuclear body 804
        PML body 95
Path 2
Term Annotations click to browse term
  cellular_component 17755
    cellular anatomical entity 17660
      organelle 12978
        membrane-bounded organelle 11769
          intracellular membrane-bounded organelle 11220
            nucleus 7008
              nuclear lumen 4060
                nucleoplasm 3591
                  nuclear body 804
                    PML body 95
paths to the root