NBN (nibrin) - Rat Genome Database

Name: NBN
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: NBN (nibrin) Chlorocebus sabaeus

Analyze

Symbol:

NBN

Name:

nibrin

RGD ID:

18632334

Description:

ENCODES a protein that exhibits chromatin-protein adaptor activity (inferred); damaged DNA binding (inferred); DNA-binding transcription factor binding (inferred); INVOLVED IN DNA damage checkpoint signaling (ortholog); intrinsic apoptotic signaling pathway (ortholog); mitotic G2 DNA damage checkpoint signaling (ortholog); PARTICIPATES IN ataxia telangiectasia-mutated (ATM) signaling pathway; homologous recombination pathway of double-strand break repair; ASSOCIATED WITH acute lymphoblastic leukemia (ortholog); Alzheimer's disease (ortholog); aplastic anemia (ortholog); FOUND IN BRCA1-C complex (ortholog); chromosome, telomeric region (ortholog); Mre11 complex (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	NBN (nibrin)	NCBI	Ortholog
Mus musculus (house mouse):	Nbn (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Nbn (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Nbn (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	NBN (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	NBN (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Nbn (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	NBN (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Nbn (nibrin)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

ChlSab1.1 - Green Monkey 1.1 Assembly

Position:

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	85,017,807 - 85,069,219 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	85,015,752 - 85,069,028 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	55,810,092 - 55,861,864 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

acute lymphoblastic leukemia (ISO)

Alzheimer's disease (ISO)

aplastic anemia (ISO)

breast cancer (ISO)

Breast Cancer, Familial (ISO)

breast carcinoma (ISO)

colon carcinoma (ISO)

COVID-19 (ISO)

diffuse large B-cell lymphoma (ISO)

disease of metabolism (ISO)

hepatocellular carcinoma (ISO)

hereditary breast ovarian cancer syndrome (ISO)

Hereditary Neoplastic Syndromes (ISO)

lissencephaly (ISO)

microcephaly (ISO)

Neoplasm Recurrence, Local (ISO)

Nijmegen breakage syndrome (ISO)

nuclear type mitochondrial complex I deficiency 20 (ISO)

ovarian cancer (ISO)

ovarian carcinoma (ISO)

pancreatic carcinoma (ISO)

primary ovarian insufficiency (ISO)

prostate cancer (ISO)

Prostatic Neoplasms (ISO)

rectum cancer (ISO)

stomach cancer (ISO)

stomatitis (ISO)

T-cell acute lymphoblastic leukemia (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

blastocyst growth (IEA)

DNA damage checkpoint signaling (IEA,ISO)

DNA double-strand break processing (IEA)

DNA duplex unwinding (IEA)

DNA repair (IEA)

DNA strand resection involved in replication fork processing (IEA)

double-strand break repair (IEA)

double-strand break repair via alternative nonhomologous end joining (IEA)

double-strand break repair via homologous recombination (IEA)

in utero embryonic development (IEA)

intrinsic apoptotic signaling pathway (IEA,ISO)

isotype switching (IEA)

meiotic cell cycle (IEA)

mitotic G2 DNA damage checkpoint signaling (IEA,ISO)

negative regulation of neuron differentiation (ISO)

negative regulation of telomere capping (IEA)

negative regulation of viral entry into host cell (ISO)

neuroblast proliferation (IEA,ISO)

neuromuscular process controlling balance (IEA,ISO)

positive regulation of cell population proliferation (ISO)

positive regulation of protein autophosphorylation (IEA)

positive regulation of telomere maintenance (IEA)

protection from non-homologous end joining at telomere (IEA)

protein localization to site of double-strand break (IEA)

R-loop processing (IEA)

regulation of fibroblast proliferation (ISO)

response to xenobiotic stimulus (ISO)

t-circle formation (IEA)

telomere maintenance (IEA)

telomere maintenance in response to DNA damage (IEA)

telomere maintenance via telomere trimming (IEA)

telomeric 3' overhang formation (IEA)

Cellular Component

BRCA1-C complex (IEA,ISO)

chromosome (IEA)

chromosome, telomeric region (IEA,ISO)

Golgi apparatus (IEA)

Mre11 complex (IEA,ISO)

nuclear inclusion body (IEA)

nucleolus (IEA)

nucleoplasm (IEA)

nucleus (IEA)

PML body (IEA)

replication fork (IEA)

site of double-strand break (IEA,ISO)

Molecular Function

chromatin-protein adaptor activity (IEA)

damaged DNA binding (IEA)

DNA-binding transcription factor binding (IEA)

histone binding (IEA)

phosphorylation-dependent protein binding (IEA)

protein binding (ISO)

protein serine/threonine kinase activator activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

ataxia telangiectasia-mutated (ATM) signaling pathway (ISO)

homologous recombination pathway of double-strand break repair (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

NBN
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	85,017,807 - 85,069,219 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	8	85,015,752 - 85,069,028 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666039	55,810,092 - 55,861,864 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

NBN
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	89,933,331 - 89,984,667 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	89,924,515 - 90,003,228 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	8	90,945,559 - 90,996,895 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	91,014,740 - 91,066,075 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	8	91,014,888 - 91,066,072	NCBI
Celera	8	87,140,375 - 87,191,710 (-)	NCBI		Celera
Cytogenetic Map	8	q21.3	NCBI
HuRef	8	86,155,741 - 86,207,078 (-)	NCBI		HuRef
CHM1_1	8	90,986,489 - 91,037,825 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	8	91,056,512 - 91,107,848 (-)	NCBI		T2T-CHM13v2.0

Nbn
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	15,955,388 - 15,992,589 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	15,957,925 - 15,992,589 (+)	Ensembl		GRCm39 Ensembl
GRCm38	4	15,957,587 - 15,992,589 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	15,957,925 - 15,992,589 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	4	15,885,114 - 15,919,736 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	4	15,885,115 - 15,919,736 (+)	NCBI		MGSCv36	mm8
Celera	4	15,761,229 - 15,795,887 (+)	NCBI		Celera
Cytogenetic Map	4	A2	NCBI
cM Map	4	6.66	NCBI

Nbn
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	34,256,678 - 34,291,163 (+)	NCBI		GRCr8
mRatBN7.2	5	29,459,574 - 29,494,152 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	29,459,457 - 29,494,150 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	5	31,615,796 - 31,650,590 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	33,208,466 - 33,243,256 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	33,168,642 - 33,203,436 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	29,622,347 - 29,656,877 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	29,622,281 - 29,656,864 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	5	34,300,932 - 34,335,393 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	5	30,541,610 - 30,576,168 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	5	30,541,609 - 30,576,168 (+)	NCBI
Celera	5	28,665,088 - 28,699,404 (+)	NCBI		Celera
Cytogenetic Map	5	q13	NCBI

Nbn
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955417	6,839,312 - 6,880,133 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955417	6,840,916 - 6,880,479 (-)	NCBI	ChiLan1.0	ChiLan1.0

NBN
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	107,329,160 - 107,380,523 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	82,868,830 - 82,938,522 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	86,622,797 - 86,674,202 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	88,575,198 - 88,626,200 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	88,575,198 - 88,626,307 (-)	Ensembl	panpan1.1		panPan2

NBN
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	29	35,416,093 - 35,477,569 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	29	35,416,093 - 35,477,563 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	29	35,567,773 - 35,628,935 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	29	35,612,774 - 35,674,851 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	29	35,612,774 - 35,692,878 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	29	35,604,159 - 35,665,432 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	29	35,624,597 - 35,685,889 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	29	36,059,084 - 36,120,657 (-)	NCBI		UU_Cfam_GSD_1.0

Nbn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	43,980,776 - 44,018,864 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936544	3,775,220 - 3,808,837 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936544	3,773,828 - 3,812,673 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

NBN
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	46,787,691 - 46,874,603 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	46,787,664 - 46,854,331 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	51,264,106 - 51,288,533 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

Nbn
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624744	2,013,922 - 2,061,708 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624744	2,013,936 - 2,061,726 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	endocrine system	hemolymphoid system	nervous system
High
Medium	32		43
Low	4	20	17
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008001042	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008001044	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_498536	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JACDXN010000007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSCSAT00000010990 ⟹ ENSCSAP00000009072

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1 Ensembl	8	85,015,752 - 85,069,028 (-)	Ensembl

RefSeq Acc Id:

XM_008001042 ⟹ XP_007999233

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	85,019,296 - 85,069,204 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	55,810,092 - 55,861,864 (+)	NCBI

Sequence:

show sequence

TAACCTTCGACACCTTAGAAACGTACCCTTTTAACGCAGCACAGTTCAATACCGATTGTGTTGT
TCCTTTTCCAACCACCAGGTGGCGGCCAAGCGCCCAAATCGCACTCCCGCCTCTTCCAAGGCAG
CCTGCGTGGCTCCCGGGAGCGCGCACGTCCCGGAGCCCGTGCCGACCGCAGGCGCCGTATCCGC
GCTCGTCTACCAGCCCCGGTTACGCGGTTGCACGCCGGCCTCAGCCCTGAGCAGCCGGACCCAT
GTGGAAACTGCTGCCCGTCGCGGGTCCGGCAGGAGGAGAGCCATACAGACTTTTGACTGGCGTT
GAGTACGTTGTTGGAAGGAAAAACTGTGCCATTCTAATTGAAAATGATCAGTCAATCAGCCGAA
ATCATGCTGTGTTAACTGCTAACTTTTCGGTAACCAACCTGAGTCAAACAGATGAAATCCCTGT
ATTGACATTAAAAGATAATTCTAAGTATGGTACCTTTGTTAATGAGGAAAAAATGCAGAATGGC
TTTTCCCGAACTTTGAAGTCGGGGGATGGTATTACTTTTGGAGTGTTTGAAAGTAAATTCAGAG
TAGAGTATGAGCCTTTGGTTGCATGCTCTTCTTGTTTAGATGTCTCTGGGAAAACTGCTTTAAA
TCAAGCTGTATTGCAACTTGGAGGATTTACTGTAAACAATTGGACAGAAGAATGCACTCACCTT
GTCATGGTATCAGTGAAAGTTACCATTAAAACTATTTGTGCACTCATTTGTGGACGTCCAATTG
TAAAGCCAGAATATTTTACTGAATTCCTGAAAGCAGTTCAGTCCAAGAAGCAGCCTCCACAAAT
TGAAAGTTTTTACCCACCTCTTGATGAACCGTCTATTGGAAGTAAAAATGTTGATCTGTCAGGA
CGACAGGAAAGAAAACAAATCTTCAAAGGGAAAACATTTATATTTTTGAGTGCCAAACAGCATA
AGAAATTGAGTTCTGCAGTTGTCTTTGGAGGTGGGGAAGCTAGGTTGATAACAGAAGAAAATGA
AGAACATAATTTATTTTTGGCTCCAGAAACATGTGTTGTTGATACAGGAATATCAAACTCACAG
ACCTTAATTCCTGACTCTCAGAAGAAATGGATTCAGTCAATAATGGATATGCTCCAAAGGCAAG
GTCTTCGACCTATTCCTGAAGCAGAAATTGGATTGGCGGTGATTTTCATAACTACAAAGAATTA
CTGTGATCCTCGGGGCCATCCCAGTACAGGATTAAAGACAACAACTCCAGGACCAAGCCTTTCA
CAAGGCTTGTCAGTTGATGAAAAACTAATGCCAAGCGCCCCAGTGAACGCTACAACATGCGTAG
CTGACACAGAATCAGAGCAAGCAGATACATGGGATTTGAGTGAAAGGCCGAAAGAAATGAAAGT
CTCCAAAATGGAACAAAAAATCAGAATGCTTTCACAAGACACACCCACTATAAAGGAGTCCTGC
AAAACAAGCTCCAATAATAATAGTATGGTATCAAATACTTTAGCTAAGATGAGAATCCCAAACT
ATCAGCTTTCACCAACTAAATTGCCAAGTATAAATAAAAGTAAAGATAGGGCTTCTCAGCAGCA
GCAGACCAACTCCATCAGAAACTACTTTCAGCCGTCTACCAAAAAAAGGGAAAGGGATGAAGAA
AATCAAGAAATGTCTTCATGCAAATCAGCAAGAATAGAAATGTCTTGTTCTGTTTTAGAACAAA
CACAACCTGTTACACCCTCATTATGGAAAAATAAGGAGCAGCATTTATCTCAGAATGAGCCTGT
GGACACAAACTCAGATGATAACTTATTTACAGATACAGATTTAAAATCCAGTGTGAAAAATTCT
GCCAGTAAATCTCATGCTTCAGAAAAGCTAAGATCAAATAAAAAAAGAGAAATGGATGATGTGG
CCATAGAAGATGAAGTATTGGAACAGTTATTCAAGGACACAAAACCAGAATTAGAAACTGTTGT
GAAAGTTCAAAAACAAGAGGAAGATGTCAATATTAGAAAAAGGCCAAGGATGGATATAGAAACA
AATGATGCTTTCAGTGATGAAGCAGTACCAGAAAGTAGCAAAGTATCTCAAGAAAATGATATTG
GGAAGAAACGTGAACTCAAGGAAGGATCACTATGGTCAACTAAAGAAGAAATATCTAACAATGA
CAAACTTCAGGTTGATAGTGAGATGCTTCCAAGAAAGCTGTTATTGACTGAATTTAGATCACTG
GTGATTGAAAACTCTACTTCCAGAAATCCATCTGGCATAAATTATTATGGTCAACTTAACAATT
TCAAGAAATTCAAAAAGGTCACATATCCTGGAGCAGGAAAACTTCCACACATCATTGGAGGATC
AGATCTAATACCTCATCATGCTCGAAAGAATACAGAACTAGAAGAGTGGCTAAGGCAGGAAATG
GAGGTACAAAATCAACATGCAAAAGAAGAGTCTCTTGCTGATGATCTTTTTAGATACAATCCTT
ATTTAAAAAGGAGAAGATAACTGAGGATTTTAAAAAGAAGCCATGGAAAAACTTCCTAATAAGC
ATCTACTTCAGGCCAACAAGGTTATATGAATATATATAGTATATAGAAGAGATTTAAGTTACAA
TATTTTATGGCCTACATTTATTAAATAAAATGCACAAAACTGA

hide sequence

RefSeq Acc Id:

XM_008001043 ⟹ XP_007999234

Type:

CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	85,019,296 - 85,069,211 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	55,810,092 - 55,861,864 (+)	NCBI

Sequence:

show sequence

AAGGTAGTAACCTTCGACACCTTAGAAACGTACCCTTTTAACGCAGCACAGTTCAATACCGATT
GTGTTGTTCCTTTTCCAACCACCAGGTGGCGGCCAAGCGCCCAAATCGCACTCCCGCCTCTTCC
AAGGCAGCCTGCGTGGCTCCCGGGAGCGCGCACGTCCCGGAGCCCGTGCCGACCGCAGGCGCCG
TATCCGCGCTCGTCTACCAGCCCCGGTTACGCGGTTGCACGCCGGCCTCAGCCCTGAGCAGCCG
GACCCATGTGGAAACTGCTGCCCGTCGCGGGTCCGGCAGGAGGAGAGCCATACAGACTTTTGAC
TGGCGTTGAGTACGTTGTTGGAAGGAAAAACTGTGCCATTCTAATTGAAAATGATCAGTCAATC
AGCCGAAATCATGCTGTGTTAACTGCTAACTTTTCGGTAACCAACCTGAGTCAAACAGATGAAA
TCCCTGTATTGACATTAAAAGATAATTCTAAGTATGGTACCTTTGTTAATGAGGAAAAAATGCA
GAATGGCTTTTCCCGAACTTTGAAGTCGGGGGATGGTATTACTTTTGGAGTGTTTGAAAGTAAA
TTCAGAGTAGAGTATGAGCCTTTGGTTGCATGCTCTTCTTGTTTAGATGTCTCTGGGAAAACTG
CTTTAAATCAAGCTGTATTGCAACTTGGAGGATTTACTGTAAACAATTGGACAGAAGAATGCAC
TCACCTTGTCATGGTATCAGTGAAAGTTACCATTAAAACTATTTGTGCACTCATTTGTGGACGT
CCAATTGTAAAGCCAGAATATTTTACTGAATTCCTGAAAGCAGTTCAGTCCAAGAAGCAGCCTC
CACAAATTGAAAGTTTTTACCCACCTCTTGATGAACCGTCTATTGGAAGTAAAAATGTTGATCT
GTCAGGACGACAGGAAAGAAAACAAATCTTCAAAGGGAAAACATTTATATTTTTGAGTGCCAAA
CAGCATAAGAAATTGAGTTCTGCAGTTGTCTTTGGAGGTGGGGAAGCTAGGTTGATAACAGAAG
AAAATGAAGAACATAATTTATTTTTGGCTCCAGAAACATGTGTTGTTGATACAGGAATATCAAA
CTCACAGACCTTAATTCCTGACTCTCAGAAGAAATGGATTCAGTCAATAATGGATATGCTCCAA
AGGCAAGGTCTTCGACCTATTCCTGAAGCAGAAATTGGATTGGCGGTGATTTTCATAACTACAA
AGAATTACTGTGATCCTCGGGGCCATCCCAGTACAGGATTAAAGACAACAACTCCAGGACCAAG
CCTTTCACAAGGCTTGTCAGTTGATGAAAAACTAATGCCAAGCGCCCCAGTGAACGCTACAACA
TGCGTAGCTGACACAGAATCAGAGCAAGCAGATACATGGGATTTGAGTGAAAGGCCGAAAGAAA
TGAAAGTCTCCAAAATGGAACAAAAAATCAGAATGCTTTCACAAGACACACCCACTATAAAGGA
GTCCTGCAAAACAAGCTCCAATAATAATAGTATGGTATCAAATACTTTAGCTAAGATGAGAATC
CCAAACTATCAGCTTTCACCAACTAAATTGCCAAGTATAAATAAAAGTAAAGATAGGGCTTCTC
AGCAGCAGCAGACCAACTCCATCAGAAACTACTTTCAGCCGTCTACCAAAAAAAGGGAAAGGGA
TGAAGAAAATCAAGAAATGTCTTCATGCAAATCAGCAAGAATAGAAATGTCTTGTTCTGTTTTA
GAACAAACACAACCTGTTACACCCTCATTATGGAAAAATAAGGAGCAGCATTTATCTCAGAATG
AGCCTGTGGACACAAACTCAGATGATAACTTATTTACAGATACAGATTTAAAATCCAGTGTGAA
AAATTCTGCCAGTAAATCTCATGCTTCAGAAAAGCTAAGATCAAATAAAAAAAGAGAAATGGAT
GATGTGGCCATAGAAGATGAAGTATTGGAACAGTTATTCAAGGACACAAAACCAGAATTAGAAA
CTGTTGTGAAAGTTCAAAAACAAGAGGAAGATGTCAATATTAGAAAAAGGCCAAGGATGGATAT
AGAAACAAATGATGCTTTCAGTGATGAAGCAGTACCAGAAAGTAGCAAAGTATCTCAAGAAAAT
GATATTGGGAAGAAACGTGAACTCAAGGAAGGATCACTATGGTCAACTAAAGAAGAAATATCTG
TCACATATCCTGGAGCAGGAAAACTTCCACACATCATTGGAGGATCAGATCTAATACCTCATCA
TGCTCGAAAGAATACAGAACTAGAAGAGTGGCTAAGGCAGGAAATGGAGGTACAAAATCAACAT
GCAAAAGAAGAGTCTCTTGCTGATGATCTTTTTAGATACAATCCTTATTTAAAAAGGAGAAGAT
AACTGAGGATTTTAAAAAGAAGCCATGGAAAAACTTCCTAATAAGCATCTACTTCAGGCCAACA
AGGTTATATGAATATATATAGTATATAGAAGAGATTTAAGTTACAATATTTTATGGCCTACATT
TATTAAATAAAATGCACAAAACTGA

hide sequence

RefSeq Acc Id:

XR_498536

Type:

NON-CODING

Position:

Green Monkey Assembly	Chr	Position (strand)	Source
ChlSab1.1	8	85,017,807 - 85,069,204 (-)	NCBI
Vero_WHO_p1.0	NW_023666039	55,810,130 - 55,861,864 (+)	NCBI

Sequence:

show sequence

TAACCTTCGACACCTTAGAAACGTACCCTTTTAACGCAGCACAGTTCAATACCGATTGTGTTGT
TCCTTTTCCAACCACCAGGTGGCGGCCAAGCGCCCAAATCGCACTCCCGCCTCTTCCAAGGCAG
CCTGCGTGGCTCCCGGGAGCGCGCACGTCCCGGAGCCCGTGCCGACCGCAGGCGCCGTATCCGC
GCTCGTCTACCAGCCCCGGTTACGCGGTTGCACGCCGGCCTCAGCCCTGAGCAGCCGGACCCAT
GTGGAAACTGCTGCCCGTCGCGGGTCCGGCAGGAGGAGAGCCATACAGACTTTTGACTGGCGTT
GAGTACGTTGTTGGAAGGAAAAACTGTGCCATTCTAATTGAAAATGATCAGTCAATCAGCCGAA
ATCATGCTGTGTTAACTGCTAACTTTTCGGTAACCAACCTGAGTCAAACAGATGAAATCCCTGT
ATTGACATTAAAAGATAATTCTAAGTATGGTACCTTTGTTAATGAGGAAAAAATGCAGAATGGC
TTTTCCCGAACTTTGAAGTCGGGGGATGGTATTACTTTTGGAGTGTTTGAAAGTAAATTCAGAG
TAGAGTATGAGCCTTTGGTTGCATGCTCTTCTTGTTTAGATGTCTCTGGGAAAACTGCTTTAAA
TCAAGCTGTATTGCAACTTGGAGGATTTACTGTAAACAATTGGACAGAAGAATGCACTCACCTT
GTCATGGTATCAGTGAAAGTTACCATTAAAACTATTTGTGCACTCATTTGTGGACGTCCAATTG
TAAAGCCAGAATATTTTACTGAATTCCTGAAAGCAGTTCAGTCCAAGAAGCAGCCTCCACAAAT
TGAAAGTTTTTACCCACCTCTTGATGAACCGTCTATTGGAAGTAAAAATGTTGATCTGTCAGGA
CGACAGGAAAGAAAACAAATCTTCAAAGGGAAAACATTTATATTTTTGAGTGCCAAACAGCATA
AGAAATTGAGTTCTGCAGTTGTCTTTGGAGGTGGGGAAGCTAGGTTGATAACAGAAGAAAATGA
AGAACATAATTTATTTTTGGCTCCAGAAACATGTGTTGTTGATACAGGAATATCAAACTCACAG
ACCTTAATTCCTGACTCTCAGAAGAAATGGATTCAGTCAATAATGGATATGCTCCAAAGGCAAG
GTCTTCGACCTATTCCTGAAGCAGAAATTGGATTGGCGGTGATTTTCATAACTACAAAGAATTA
CTGTGATCCTCGGGGCCATCCCAGTACAGGATTAAAGACAACAACTCCAGGACCAAGCCTTTCA
CAAGGCTTGTCAGTTGATGAAAAACTAATGCCAAGCGCCCCAGTGAACGCTACAACATGCGTAG
CTGACACAGAATCAGAGCAAGCAGATACATGGGATTTGAGTGAAAGGCCGAAAGAAATGAAAGT
CTCCAAAATGGAACAAAAAATCAGAATGCTTTCACAAGACACACCCACTATAAAGGAGTCCTGC
AAAACAAGCTCCAATAATAATAGTATGGTATCAAATACTTTAGCTAAGATGAGAATCCCAAACT
ATCAGCTTTCACCAACTAAATTGCCAAGTATAAATAAAAGTAAAGATAGGGCTTCTCAGCAGCA
GCAGACCAACTCCATCAGAAACTACTTTCAGCCGTCTACCAAAAAAAGGGAAAGGGATGAAGAA
AATCAAGAAATGTCTTCATGCAAATCAGCAAGAATAGAAATGTCTTGTTCTGTTTTAGAACAAA
CACAACCTGTTACACCCTCATTATGGAAAAATAAGGAGCAGCATTTATCTCAGAATGAGCCTGT
GGACACAAACTCAGATGATAACTTATTTACAGATACAGATTTAAAATCCAGTGTGAAAAATTCT
GCCAGTAAATCTCATGCTTCAGAAAAGCTAAGATCAAATAAAAAAAGAGAAATGGATGATGTGG
CCATAGAAGATGAAGTATTGGAACAGTTATTCAAGGACACAAAACCAGAATTAGAAACTGTTGT
GAAAGTTCAAAAACAAGAGGAAGATGTCAATATTAGAAAAAGGCCAAGGATGGATATAGAAACA
AATGATGCTTTCAGTGATGAAGCAGTACCAGAAAGTAGCAAAGTATCTCAAGAAAATGATATTG
GGAAGAAACGTGAACTCAAGGAAGGATCACTATGGTCAACTAAAGAAGAAATATCTAACAATGA
CAAACTTCAGGTTGATAGTGAGATGCTTCCAAGAAAGCTGTTATTGACTGAATTTAGATCACTG
GTGATTGAAAACTCTACTTCCAGAAATCCATCTGGCATAAATTATTATGGTCAACTTAACAATT
TCAAGAAATTCAAAAAGGTCACATATCCTGGAGCAGGAAAACTTCCACACATCATTGGAGGATC
AGATCTAATACCTCATCATGCTCGAAAGAATACAGAACTAGAAGAGTGGCTAAGGCAGGAAATG
GAGGTACAAAATCAACATGCAAAAGAAGAGTCTCTTGCTGATGATCTTTTTAGATACAATCCTT
ATTTAAAAAGGAGAAGATAACTGAGGATTTTAAAAAGAAGCCATGGAAAAACTTCCTAATAAGC
ATCTACTTCAGGCCAACAAGGGAGATGGTAAGAAACAACGAATGTCTTTTTTCAAACTTTATTG
ACAAGTGATTTTCAACTCTGTGTTCGAGAATATATTCATGTACCTGTGATCCAGCAAGAAGGAA
GCTCCAATCAAGAATCACTACAACTGCTTAGTTGTCTGGAGAATGAGAAATGGAACAGTGAGGA
ATGGAGGCCATGTTTCCATGACTTCCCTTATAAACAGAAGCAACAAAAGGGACAAGAGGTTGGC
CTCTACATCACTCTCACCTTCCAAATCTTGTGGAAGTGCATCTACTTGCCAGAACCAAATTAAA
CTTACTTCCAAGTTCTGGCTACTTGCAGGTGGAACTCCAGCTGCAAGGGAGTTAGGGAAATGAA
GTTTTTTTTTTAAAGCTTCTCAGCCTTCCTAGGGAGCAGAAATTAGGTGAGTCAATCTGCAATT
TCTGCTATATGCATTGAGATAAGTTAGATTATTGAAATATTATAGAGAGTTATGAACACTTAAA
TTATGATAGTGGTATGACATTGGATAGAACATGGGATACCTTAGAAATAGAATTGACAGGGCAT
ATTAATTGATGAAATGGAGTCATTTGAGTCTGTTAATAGCCATGTATCATAATTACCGAGTGAA
CCTGGTGGAACATATGGTCTCCATTTTACAGTTAAGGAATATAATGGACAGATTAATATTGGTC
TCTGTCATGCCCACAATCCCTTTCTAAGACTGCCCTACCTATAGCAATTTTTATATTTGTCAGT
TTATGAATATAATGAATGAGAGTTCTGGTACCTCCTATCTTTACAAATATTGGTGGTGTCAGTA
TTTTTCCTTTTAACCATTCCAAT

hide sequence

Protein Sequences


Protein RefSeqs	XP_007999233	(Get FASTA)	NCBI Sequence Viewer
	XP_007999234	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCSAP00000009072.1

RefSeq Acc Id:	XP_007999234 ⟸ XM_008001043
- Peptide Label:	isoform X2
- UniProtKB:	A0A0D9RKD3 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_007999233 ⟸ XM_008001042
- Peptide Label:	isoform X1
- UniProtKB:	A0A0D9RKD3 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSCSAP00000009072 ⟸ ENSCSAT00000010990

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCSAG00000012900	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCSAT00000010990.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.200.20	UniProtKB/TrEMBL
	3.40.50.10190	UniProtKB/TrEMBL
	3.40.50.10980	UniProtKB/TrEMBL
InterPro	BRCT_dom_sf	UniProtKB/TrEMBL
	DNA-repair_Nbs1_C	UniProtKB/TrEMBL
	FHA_dom	UniProtKB/TrEMBL
	Nibrin-rel	UniProtKB/TrEMBL
	Nibrin_BRCT2	UniProtKB/TrEMBL
	Nibrin_BRCT2_sf	UniProtKB/TrEMBL
	Nibrin_met	UniProtKB/TrEMBL
	SMAD_FHA_dom_sf	UniProtKB/TrEMBL
KEGG Report	csab:103237098	UniProtKB/TrEMBL
NCBI Gene	NBN	ENTREZGENE
PANTHER	NIBRIN	UniProtKB/TrEMBL
	PTHR12162	UniProtKB/TrEMBL
Pfam	FHA	UniProtKB/TrEMBL
	Nbs1_C	UniProtKB/TrEMBL
	NIBRIN_BRCT_II	UniProtKB/TrEMBL
PIRSF	Nibrin_animal	UniProtKB/TrEMBL
PROSITE	FHA_DOMAIN	UniProtKB/TrEMBL
SMART	FHA	UniProtKB/TrEMBL
	Nbs1_C	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49879	UniProtKB/TrEMBL
	SSF52113	UniProtKB/TrEMBL
UniProt	A0A0D9RKD3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations

Send us a Message

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - MGI

Imported Disease Annotations - OMIM

RGD Manual Annotations