Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources

ONTOLOGY REPORT - ANNOTATIONS

Term:inclusion body
go back to main search page
Accession:GO:0016234 term browser browse the term
Definition:A discrete intracellular part formed of aggregated molecules such as proteins or other biopolymers.
Synonyms:narrow_synonym: neuronal cytoplasmic inclusion
 related_synonym: cellular inclusion
 xref: NIF_Subcellular:sao120573470;   Wikipedia:Inclusion_bodies


show annotations for term's descendants           Sort by:
inclusion body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G AGL amylo-alpha-1, 6-glucosidase, 4-alpha-glucanotransferase located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:50,039,661...50,112,543
Ensembl chr 6:50,041,947...50,112,279 		JBrowse link
G BAG5 BAG cochaperone 5 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:71,318,730...71,324,743
Ensembl chr 8:71,321,625...71,322,992 		JBrowse link
G DNAJB2 DnaJ heat shock protein family (Hsp40) member B2 located_in ISO (PMID:15936278) BHF-UCL PMID:15936278 NCBI chr37:25,826,496...25,834,011
Ensembl chr37:25,827,713...25,833,144 		JBrowse link
G GYS1 glycogen synthase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:107,401,056...107,417,273
Ensembl chr 1:107,401,114...107,417,122 		JBrowse link
G HAP1 huntingtin associated protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:21,065,770...21,074,462
Ensembl chr 9:21,065,846...21,072,991 		JBrowse link
G HDAC6 histone deacetylase 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,004,268...42,024,726
Ensembl chr  X:42,004,591...42,024,427 		JBrowse link
G HSP70 heat shock protein 70 located_in ISO (PMID:15603737) BHF-UCL PMID:15603737 NCBI chr12:1,285,282...1,287,670 JBrowse link
G HSP90AB1 heat shock protein 90 alpha family class B member 1 ISO pseudovacuole RGD PMID:18445155 RGD:5686867 NCBI chr12:12,658,415...12,664,945
Ensembl chr12:12,660,008...12,664,940 		JBrowse link
G HTT huntingtin located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:61,076,934...61,221,462
Ensembl chr 3:61,079,904...61,330,290 		JBrowse link
G IAPP islet amyloid polypeptide located_in ISO (PMID:22944668) UniProt PMID:22944668 NCBI chr27:26,295,481...26,299,967
Ensembl chr27:26,295,481...26,299,967 		JBrowse link
G KEAP1 kelch like ECH associated protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:50,651,070...50,661,178
Ensembl chr20:50,650,711...50,658,496 		JBrowse link
G LOC100687259 26S proteasome regulatory subunit 10B ISO RGD PMID:18986984 RGD:7242199 NCBI chr32:35,814,756...35,816,311 JBrowse link
G MIOX myo-inositol oxygenase located_in ISO (PMID:11716759) UniProt PMID:11716759 NCBI chr10:16,813,532...16,815,930
Ensembl chr10:16,813,545...16,818,015 		JBrowse link
G MT-III transcription initiation factor TFIID subunit 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:59,624,845...59,630,386 JBrowse link
G MT3 metallothionein 3 located_in IEA Ensembl GO_REF:0000107 Ensembl chr 2:59,624,849...59,626,424 JBrowse link
G PRNP prion protein located_in IEA Ensembl GO_REF:0000107 NCBI chr24:16,845,224...16,862,319
Ensembl chr24:16,846,207...16,859,815 		JBrowse link
G PSMC4 proteasome 26S subunit, ATPase 4 ISO RGD PMID:18986984 RGD:7242199 NCBI chr 1:113,548,351...113,557,725
Ensembl chr 1:113,548,373...113,557,630 		JBrowse link
G PSMC5 proteasome 26S subunit, ATPase 5 ISO RGD PMID:18986984 RGD:7242199 NCBI chr 9:11,783,422...11,787,624
Ensembl chr 9:11,783,466...11,787,617 		JBrowse link
G RAD50 RAD50 double strand break repair protein ISO Ad5-transformed BRK cells RGD PMID:18212738 RGD:2300253 NCBI chr11:20,836,863...20,928,930
Ensembl chr11:20,836,879...20,928,819 		JBrowse link
G SNCA synuclein alpha located_in ISO (PMID:17222866), (PMID:20039155)
(MGI:5582171|PMID:17222866), (PMID:24076025)		 ParkinsonsUK-UCL
MGI		 PMID:17222866 PMID:20039155 PMID:24076025 MGI:5582171 NCBI chr32:12,915,871...13,079,338
Ensembl chr32:12,916,215...13,060,383 		JBrowse link
G SNCB synuclein beta located_in ISO (PMID:17222866) ParkinsonsUK-UCL PMID:17222866 NCBI chr 4:36,710,236...36,719,455
Ensembl chr 4:36,616,039...36,764,501 		JBrowse link
G SQSTM1 sequestosome 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr11:1,859,776...1,869,289
Ensembl chr11:1,859,465...1,870,755 		JBrowse link
G WDFY3 WD repeat and FYVE domain containing 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr32:8,430,856...8,662,988
Ensembl chr32:8,433,080...8,695,859 		JBrowse link
G ZP2 zona pellucida glycoprotein 2 located_in IDA (PMID:12052239) UniProt PMID:12052239 NCBI chr 6:24,230,202...24,242,441
Ensembl chr 6:24,230,201...24,242,451 		JBrowse link
aggresome term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CABIN1 calcineurin binding protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr26:28,366,264...28,517,570
Ensembl chr26:28,366,265...28,517,656 		JBrowse link
G CARD14 caspase recruitment domain family member 14 located_in IEA Ensembl GO_REF:0000107 NCBI chr 9:1,547,645...1,571,567
Ensembl chr 9:1,547,686...1,573,581 		JBrowse link
G CLU clusterin ISO RGD PMID:12799419 RGD:1582417 NCBI chr25:29,982,811...29,999,565
Ensembl chr25:29,982,811...29,999,563 		JBrowse link
G DVL2 dishevelled segment polarity protein 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:32,194,326...32,201,922
Ensembl chr 5:32,194,313...32,201,857 		JBrowse link
G EDEM1 ER degradation enhancing alpha-mannosidase like protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:12,444,013...12,473,188
Ensembl chr20:12,452,730...12,472,069 		JBrowse link
G EEF2 eukaryotic translation elongation factor 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:55,577,413...55,586,422
Ensembl chr20:55,522,213...55,586,126 		JBrowse link
G EPS15 epidermal growth factor receptor pathway substrate 15 located_in IEA Ensembl GO_REF:0000107 NCBI chr15:9,834,285...9,895,755
Ensembl chr15:9,787,260...9,893,540 		JBrowse link
G FGR FGR proto-oncogene, Src family tyrosine kinase located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:72,678,858...72,692,417
Ensembl chr 2:72,680,675...72,690,251 		JBrowse link
G HDAC6 histone deacetylase 6 located_in IEA Ensembl GO_REF:0000107 NCBI chr  X:42,004,268...42,024,726
Ensembl chr  X:42,004,591...42,024,427 		JBrowse link
G HOXC9 homeobox C9 located_in ISO HPA GO_REF:0000052
G HOXD3 homeobox D3 located_in IEA Ensembl GO_REF:0000107 NCBI chr36:19,961,393...19,981,672
Ensembl chr36:19,960,761...19,980,525 		JBrowse link
G HSP70 heat shock protein 70 located_in ISO (PMID:15885686) UniProt PMID:15885686 NCBI chr12:1,285,282...1,287,670 JBrowse link
G HSPB7 heat shock protein family B (small) member 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:81,628,051...81,631,939
Ensembl chr 2:81,619,999...81,630,483 		JBrowse link
G KLF8 KLF transcription factor 8 located_in ISO HPA GO_REF:0000052 NCBI chr  X:47,662,824...47,758,628
Ensembl chr  X:47,662,253...47,755,578 		JBrowse link
G KLHL14 kelch like family member 14 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:56,973,284...57,089,128
Ensembl chr 7:56,974,692...57,088,039 		JBrowse link
G POLD1 DNA polymerase delta 1, catalytic subunit located_in ISO HPA GO_REF:0000052 NCBI chr 1:106,302,583...106,331,353
Ensembl chr 1:106,302,574...106,331,385 		JBrowse link
G PRDM16 PR/SET domain 16 located_in IEA Ensembl GO_REF:0000107 NCBI chr 5:57,805,951...58,018,817
Ensembl chr 5:57,730,370...58,017,976 		JBrowse link
G PRKCQ protein kinase C theta located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:29,319,123...29,505,338
Ensembl chr 2:29,318,870...29,505,337 		JBrowse link
G PRKN parkin RBR E3 ubiquitin protein ligase located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:49,886,887...51,201,930
Ensembl chr 1:49,889,005...51,201,764 		JBrowse link
G PSAP prosaposin located_in ISO (PMID:20498017) MGI PMID:20498017 NCBI chr 4:22,571,095...22,603,880
Ensembl chr 4:22,572,153...22,603,848 		JBrowse link
G PSEN1 presenilin 1 located_in IEA
ISS		 Ensembl
UniProt		 GO_REF:0000024 GO_REF:0000107 NCBI chr 8:46,495,551...46,569,532
Ensembl chr 8:46,495,624...46,569,532 		JBrowse link
G RANGAP1 Ran GTPase activating protein 1 located_in ISO HPA GO_REF:0000052 NCBI chr10:23,953,877...23,985,622
Ensembl chr10:23,953,912...24,003,162 		JBrowse link
G RNF32 ring finger protein 32 located_in IEA Ensembl GO_REF:0000107 NCBI chr16:19,237,069...19,297,984
Ensembl chr16:19,235,972...19,280,301 		JBrowse link
G SFMBT2 Scm like with four mbt domains 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:28,637,365...28,856,505
Ensembl chr 2:28,661,058...28,853,364 		JBrowse link
G SLC2A3 solute carrier family 2 member 3 located_in ISO HPA GO_REF:0000052 NCBI chr27:37,297,932...37,309,604
Ensembl chr27:37,297,932...37,428,410 		JBrowse link
G SQSTM1 sequestosome 1 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr11:1,859,776...1,869,289
Ensembl chr11:1,859,465...1,870,755 		JBrowse link
G STRADB STE20 related adaptor beta located_in IEA Ensembl GO_REF:0000107 NCBI chr37:10,521,643...10,557,611
Ensembl chr37:10,521,574...10,557,231 		JBrowse link
G TDP2 tyrosyl-DNA phosphodiesterase 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr35:22,693,203...22,707,054
Ensembl chr35:22,693,110...22,707,008 		JBrowse link
G TRIM37 tripartite motif containing 37 located_in IEA Ensembl
TreeGrafter		 GO_REF:0000107 GO_REF:0000118 NCBI chr 9:33,446,903...33,687,650
Ensembl chr 9:33,446,918...33,687,555 		JBrowse link
G TRIM50 tripartite motif containing 50 located_in ISO (PMID:22792322) MGI PMID:22792322 NCBI chr 6:6,868,484...6,882,964
Ensembl chr 6:6,868,117...6,882,576 		JBrowse link
G UBD ubiquitin D located_in ISO (PMID:19033385) UniProt PMID:19033385 NCBI chr35:26,426,919...26,436,189 JBrowse link
G UBQLN1 ubiquilin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 1:75,767,345...75,812,278
Ensembl chr 1:75,767,188...75,838,051 		JBrowse link
G URB2 URB2 ribosome biogenesis homolog located_in IEA Ensembl GO_REF:0000107 NCBI chr 4:9,617,824...9,645,763
Ensembl chr 4:9,616,020...9,645,835 		JBrowse link
G XRN2 5'-3' exoribonuclease 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr24:2,042,521...2,128,942
Ensembl chr24:2,042,888...2,128,867 		JBrowse link
G ZBTB14 zinc finger and BTB domain containing 14 located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:71,680,692...71,687,651
Ensembl chr 7:71,682,578...71,687,703 		JBrowse link
classical Lewy body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO7 F-box protein 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:30,928,059...30,948,858
Ensembl chr10:30,928,329...30,948,977 		JBrowse link
glial cytoplasmic inclusion term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO7 F-box protein 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:30,928,059...30,948,858
Ensembl chr10:30,928,329...30,948,977 		JBrowse link
Lewy body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ARIH1 ariadne RBR E3 ubiquitin protein ligase 1 located_in ISO (PMID:21590270) UniProt PMID:21590270 NCBI chr30:35,927,277...36,040,168
Ensembl chr30:35,927,233...36,108,381 		JBrowse link
G GPX1 glutathione peroxidase 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr20:39,889,165...39,890,253
Ensembl chr20:39,889,174...39,890,260 		JBrowse link
G NUB1 negative regulator of ubiquitin like proteins 1 located_in ISO (PMID:26797281) MGI PMID:26797281 NCBI chr16:15,355,237...15,382,284
Ensembl chr16:15,352,476...15,381,095 		JBrowse link
G SQSTM1 sequestosome 1 ISO RGD PMID:15158159 RGD:13210572 NCBI chr11:1,859,776...1,869,289
Ensembl chr11:1,859,465...1,870,755 		JBrowse link
Lewy body core term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATF4 activating transcription factor 4 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:25,528,880...25,531,018
Ensembl chr10:25,528,874...25,530,993 		JBrowse link
G FBXO7 F-box protein 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:30,928,059...30,948,858
Ensembl chr10:30,928,329...30,948,977 		JBrowse link
G HERPUD1 homocysteine inducible ER protein with ubiquitin like domain 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 2:59,388,492...59,400,028
Ensembl chr 2:59,388,494...59,400,003 		JBrowse link
Lewy body corona term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G FBXO7 F-box protein 7 located_in IEA Ensembl GO_REF:0000107 NCBI chr10:30,928,059...30,948,858
Ensembl chr10:30,928,329...30,948,977 		JBrowse link
neurofibrillary tangle term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G CLU clusterin located_in IEA Ensembl GO_REF:0000107 NCBI chr25:29,982,811...29,999,565
Ensembl chr25:29,982,811...29,999,563 		JBrowse link
G MAPT microtubule associated protein tau located_in ISO (PMID:2484340) CAFA PMID:2484340 NCBI chr 9:9,572,174...9,674,082
Ensembl chr 9:9,570,557...9,674,349 		JBrowse link
G NEFH neurofilament heavy chain located_in ISO (PMID:21828286) BHF-UCL PMID:21828286 NCBI chr26:22,726,523...22,735,129
Ensembl chr26:22,726,526...22,735,125 		JBrowse link
G NEFM neurofilament medium chain located_in ISO (PMID:21828286) BHF-UCL PMID:21828286 NCBI chr25:32,493,517...32,498,615
Ensembl chr25:32,493,675...32,498,570 		JBrowse link
G PICALM phosphatidylinositol binding clathrin assembly protein located_in IEA Ensembl GO_REF:0000107 NCBI chr21:13,437,819...13,540,167
Ensembl chr21:13,437,925...13,539,616 		JBrowse link
nuclear inclusion body term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G ATXN1 ataxin 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr35:15,458,498...15,863,829
Ensembl chr35:15,452,135...15,649,747 		JBrowse link
G ATXN3 ataxin 3 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,318,440...1,354,814
Ensembl chr 8:1,247,155...1,354,720 		JBrowse link
G BCL2L2 BCL2 like 2 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:3,569,335...3,573,922
Ensembl chr 8:3,569,399...3,586,070 		JBrowse link
G LOC488622 myeloid cell nuclear differentiation antigen located_in ISO (MGI:5487541|PMID:12513910) UniProt PMID:12513910 MGI:5487541 NCBI chr38:22,874,345...22,892,362 JBrowse link
G NBN nibrin located_in IEA Ensembl GO_REF:0000107 NCBI chr29:35,416,093...35,477,569
Ensembl chr29:35,416,093...35,477,563 		JBrowse link
G NUP153 nucleoporin 153 located_in IEA Ensembl GO_REF:0000107 NCBI chr35:16,517,992...16,598,472
Ensembl chr35:16,519,109...16,589,537 		JBrowse link
G NUP98 nucleoporin 98 and 96 precursor located_in IEA Ensembl GO_REF:0000107 NCBI chr21:26,231,585...26,348,019
Ensembl chr21:26,220,963...26,336,020 		JBrowse link
G NXF1 nuclear RNA export factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr18:53,884,512...53,895,168
Ensembl chr18:53,884,546...53,895,162 		JBrowse link
G PABPN1 poly(A) binding protein nuclear 1 located_in ISO
IEA		 RGD
Ensembl		 PMID:18255312 GO_REF:0000107 RGD:9686377 NCBI chr 8:3,580,768...3,585,546
Ensembl chr 8:3,569,399...3,586,070 		JBrowse link
G RAD18 RAD18 E3 ubiquitin protein ligase located_in IEA Ensembl GO_REF:0000107 NCBI chr20:9,163,322...9,271,224
Ensembl chr20:9,163,428...9,263,730 		JBrowse link
G RANBP2 RAN binding protein 2 located_in ISO (PMID:11839768) UniProt PMID:11839768 NCBI chr10:35,088,175...35,181,248
Ensembl chr10:35,088,872...35,181,129 		JBrowse link
G SLF1 SMC5-SMC6 complex localization factor 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 3:14,792,851...14,877,024
Ensembl chr 3:14,793,363...14,869,755 		JBrowse link
G STUB1 STIP1 homology and U-box containing protein 1 located_in IEA Ensembl GO_REF:0000107 NCBI chr 6:39,893,492...39,895,385
Ensembl chr 6:39,893,670...39,897,573 		JBrowse link
G TPR translocated promoter region, nuclear basket protein located_in IEA Ensembl GO_REF:0000107 NCBI chr 7:19,376,951...19,442,368
Ensembl chr 7:19,376,975...19,442,303 		JBrowse link
G TRIP11 thyroid hormone receptor interactor 11 located_in IEA Ensembl GO_REF:0000107 NCBI chr 8:1,244,104...1,314,251
Ensembl chr 8:1,247,155...1,354,720 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  cellular_component 18906
    cellular anatomical entity 18654
      intracellular anatomical structure 14376
        inclusion body 81
          Bunina body 0
          Lewy body + 7
          Lewy body-like hyaline inclusion 0
          Pick body 0
          aggresome 35
          fibrillary inclusion 0
          glial cytoplasmic inclusion 1
          hyaline inclusion 0
          laminated body + 0
          nematosome 0
          neurofibrillary tangle 5
          nuclear inclusion body + 15
          polyhydroxyalkanoate granule 0
          skein-like inclusion 0
paths to the root