HTT (huntingtin) - Rat Genome Database

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Gene: HTT (huntingtin) Canis lupus familiaris
Analyze
Symbol: HTT
Name: huntingtin
RGD ID: 12418964
Description: ENCODES a protein that exhibits diazepam binding (ortholog); signaling receptor binding (ortholog); INVOLVED IN anatomical structure morphogenesis (ortholog); anterior/posterior pattern specification (ortholog); associative learning (ortholog); PARTICIPATES IN Huntington's disease pathway; ASSOCIATED WITH Cadmium Poisoning (ortholog); cerebral palsy (ortholog); cherubism (ortholog); FOUND IN axon (ortholog); clathrin-coated vesicle (ortholog); cytoplasmic vesicle (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: HD; huntingtin (Huntington disease); solute carrier family 6 (neurotransmitter transporter, serotonin), member 4
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: CanFam3.1 - Dog CanFam3.1 Assembly
Position:
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,076,934 - 61,221,462 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,079,904 - 61,330,290 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha363,660,661 - 63,805,148 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0361,552,532 - 61,697,091 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl361,555,965 - 61,697,087 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,044,140 - 61,188,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,248,468 - 61,393,186 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0361,608,204 - 61,752,888 (-)NCBIUU_Cfam_GSD_1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure morphogenesis  (ISO)
anterior/posterior pattern specification  (ISO)
associative learning  (ISO)
axo-dendritic transport  (ISO)
brain development  (ISO)
cellular senescence  (ISO)
central nervous system development  (ISO)
citrulline metabolic process  (ISO)
determination of adult lifespan  (ISO)
dopamine receptor signaling pathway  (ISO)
endoplasmic reticulum organization  (ISO)
endoplasmic reticulum to Golgi vesicle-mediated transport  (ISO)
endosomal transport  (ISO)
establishment of mitotic spindle orientation  (IEA)
gastrulation  (ISO)
Golgi organization  (IEA)
grooming behavior  (ISO)
hormone metabolic process  (ISO)
insulin secretion  (ISO)
lactate biosynthetic process from pyruvate  (ISO)
learning  (ISO)
learning or memory  (ISO)
locomotory behavior  (ISO)
microtubule depolymerization  (ISO)
microtubule-based transport  (IEA)
mitochondrial transport  (ISO)
mitochondrion organization  (ISO)
mRNA transport  (ISO)
multicellular organismal-level iron ion homeostasis  (ISO)
negative regulation of apoptotic process  (ISO)
negative regulation of cysteine-type endopeptidase activity  (ISO)
negative regulation of extrinsic apoptotic signaling pathway  (IEA)
neural plate formation  (ISO)
neurogenesis  (ISO)
neuron development  (ISO)
olfactory lobe development  (ISO)
paraxial mesoderm formation  (ISO)
peptide hormone secretion  (ISO)
positive regulation of aggrephagy  (IEA)
positive regulation of apoptotic process  (IEA)
positive regulation of cilium assembly  (IEA,ISO)
positive regulation of lipophagy  (IEA)
positive regulation of mitophagy  (IEA)
positive regulation of motile cilium assembly  (ISO)
positive regulation of non-motile cilium assembly  (ISO)
postsynapse to nucleus signaling pathway  (ISO)
protein destabilization  (IEA)
protein localization to centrosome  (ISO)
protein localization to nucleus  (ISO)
quinolinate biosynthetic process  (ISO)
regulation of CAMKK-AMPK signaling cascade  (IEA)
regulation of gene expression  (ISO)
regulation of intracellular mRNA localization  (ISO)
regulation of neuron apoptotic process  (ISO)
regulation of protein localization to nucleus  (ISO)
regulation of synaptic plasticity  (ISO)
response to calcium ion  (ISO)
retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum  (IEA)
social behavior  (ISO)
spermatogenesis  (ISO)
striatum development  (ISO)
urea cycle  (ISO)
vesicle transport along microtubule  (IEA,ISO)
visual learning  (ISO)
vocal learning  (IEA)

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
HTT
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1361,076,934 - 61,221,462 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl361,079,904 - 61,330,290 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha363,660,661 - 63,805,148 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0361,552,532 - 61,697,091 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl361,555,965 - 61,697,087 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1361,044,140 - 61,188,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0361,248,468 - 61,393,186 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0361,608,204 - 61,752,888 (-)NCBIUU_Cfam_GSD_1.0
HTT
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3843,074,681 - 3,243,960 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl43,041,363 - 3,243,957 (+)EnsemblGRCh38hg38GRCh38
GRCh3743,076,408 - 3,245,687 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3643,046,206 - 3,215,485 (+)NCBINCBI36Build 36hg18NCBI36
Build 3443,113,411 - 3,282,656NCBI
Celera42,987,658 - 3,157,211 (+)NCBICelera
Cytogenetic Map4p16.3NCBI
HuRef43,014,819 - 3,184,168 (+)NCBIHuRef
CHM1_143,074,471 - 3,243,442 (+)NCBICHM1_1
T2T-CHM13v2.043,073,408 - 3,242,718 (+)NCBIT2T-CHM13v2.0
Htt
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39534,919,084 - 35,069,878 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl534,919,084 - 35,069,878 (+)EnsemblGRCm39 Ensembl
GRCm38534,761,721 - 34,912,534 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl534,761,740 - 34,912,534 (+)EnsemblGRCm38mm10GRCm38
MGSCv37535,104,389 - 35,252,045 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36535,078,597 - 35,226,253 (+)NCBIMGSCv36mm8
Celera532,235,862 - 32,383,257 (+)NCBICelera
Cytogenetic Map5B2NCBI
cM Map517.92NCBI
Htt
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81480,070,456 - 80,219,668 (-)NCBIGRCr8
mRatBN7.21475,845,836 - 75,996,094 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1475,845,836 - 75,995,070 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1480,298,810 - 80,447,778 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01481,539,465 - 81,688,433 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01477,984,701 - 78,133,668 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01481,105,139 - 81,254,637 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1481,105,139 - 81,254,637 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01481,793,632 - 81,942,093 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41481,490,322 - 81,636,856 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11481,492,926 - 81,639,072 (-)NCBI
Celera1474,771,910 - 74,919,669 (-)NCBICelera
Cytogenetic Map14q21NCBI
Htt
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555141,906,502 - 2,038,889 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555141,906,189 - 2,042,357 (+)NCBIChiLan1.0ChiLan1.0
HTT
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v233,375,839 - 3,582,435 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan143,344,543 - 3,515,858 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v043,215,081 - 3,388,587 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.143,116,810 - 3,287,644 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl43,128,718 - 3,283,730 (+)Ensemblpanpan1.1panPan2
LOC101966195
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528566,741,409 - 66,966,567 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647720,599,635 - 20,668,265 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_00493647720,443,113 - 20,577,071 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647720,443,101 - 20,577,167 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
HTT
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl81,809,785 - 1,934,024 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.181,809,768 - 1,934,002 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.281,461,795 - 1,586,182 (+)NCBISscrofa10.2Sscrofa10.2susScr3
Pig Cytomap8pNCBI
HTT
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12745,493,467 - 45,657,690 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2745,497,352 - 45,657,621 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660511,852,227 - 1,977,171 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Htt
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475524,603,490 - 24,729,333 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475524,602,955 - 24,729,584 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in HTT
1002 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system reproductive system respiratory system adipose tissue
High
Medium 1 14 2 4 12 10
Low 4 5 8 6 4 6 2 6 8 6
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_014112541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_014112542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472220 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038472221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038533184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038597511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_038661694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_536221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AAEX04000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF029754 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAHUQ010000045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAQRD010000074 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAAUVH010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  REHQ01000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCAFT00000023312   ⟹   ENSCAFP00000021648
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,080,451 - 61,221,315 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000023349   ⟹   ENSCAFP00000021682
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,233,073 - 61,330,290 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000080545   ⟹   ENSCAFP00000061193
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,080,451 - 61,221,315 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082366   ⟹   ENSCAFP00000053279
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,079,904 - 61,199,624 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000082964   ⟹   ENSCAFP00000043351
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,080,451 - 61,234,900 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000084310   ⟹   ENSCAFP00000050219
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,080,451 - 61,221,315 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000085601   ⟹   ENSCAFP00000065668
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,080,451 - 61,221,315 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000087567   ⟹   ENSCAFP00000056128
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,233,073 - 61,295,988 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000091161   ⟹   ENSCAFP00000057592
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,233,073 - 61,295,988 (-)Ensembl
RefSeq Acc Id: ENSCAFT00000092447   ⟹   ENSCAFP00000060697
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1 Ensembl361,080,451 - 61,221,315 (-)Ensembl
RefSeq Acc Id: ENSCAFT00845019844   ⟹   ENSCAFP00845015538
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0 Ensembl361,555,965 - 61,697,087 (-)Ensembl
RefSeq Acc Id: XM_014112541   ⟹   XP_013968016
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1361,076,934 - 61,221,462 (-)NCBI
Dog10K_Boxer_Tasha363,660,661 - 63,805,148 (-)NCBI
Sequence:
RefSeq Acc Id: XM_038472220   ⟹   XP_038328148
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1361,044,140 - 61,188,581 (-)NCBI
RefSeq Acc Id: XM_038472221   ⟹   XP_038328149
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UMICH_Zoey_3.1361,044,140 - 61,188,581 (-)NCBI
RefSeq Acc Id: XM_038533183   ⟹   XP_038389111
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0361,608,204 - 61,752,888 (-)NCBI
RefSeq Acc Id: XM_038533184   ⟹   XP_038389112
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UU_Cfam_GSD_1.0361,608,204 - 61,752,888 (-)NCBI
RefSeq Acc Id: XM_038597510   ⟹   XP_038453438
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0361,248,468 - 61,393,186 (-)NCBI
RefSeq Acc Id: XM_038597511   ⟹   XP_038453439
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
UNSW_CanFamBas_1.0361,248,468 - 61,393,186 (-)NCBI
RefSeq Acc Id: XM_038661693   ⟹   XP_038517621
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0361,552,532 - 61,697,091 (-)NCBI
RefSeq Acc Id: XM_038661694   ⟹   XP_038517622
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
ROS_Cfam_1.0361,552,532 - 61,697,091 (-)NCBI
RefSeq Acc Id: XM_536221   ⟹   XP_536221
Type: CODING
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1361,076,934 - 61,221,462 (-)NCBI
Dog10K_Boxer_Tasha363,660,661 - 63,805,148 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013968016   ⟸   XM_014112541
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q3X4 (UniProtKB/TrEMBL),   A0A8C0M2Z1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_536221   ⟸   XM_536221
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M183 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCAFP00000050219   ⟸   ENSCAFT00000084310
RefSeq Acc Id: ENSCAFP00000056128   ⟸   ENSCAFT00000087567
RefSeq Acc Id: ENSCAFP00000021682   ⟸   ENSCAFT00000023349
RefSeq Acc Id: ENSCAFP00000021648   ⟸   ENSCAFT00000023312
RefSeq Acc Id: ENSCAFP00000053279   ⟸   ENSCAFT00000082366
RefSeq Acc Id: ENSCAFP00000060697   ⟸   ENSCAFT00000092447
RefSeq Acc Id: ENSCAFP00000043351   ⟸   ENSCAFT00000082964
RefSeq Acc Id: ENSCAFP00000061193   ⟸   ENSCAFT00000080545
RefSeq Acc Id: ENSCAFP00000065668   ⟸   ENSCAFT00000085601
RefSeq Acc Id: ENSCAFP00000057592   ⟸   ENSCAFT00000091161
RefSeq Acc Id: XP_038328149   ⟸   XM_038472221
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038328148   ⟸   XM_038472220
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038453439   ⟸   XM_038597511
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038453438   ⟸   XM_038597510
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038517622   ⟸   XM_038661694
- Peptide Label: isoform X2
- UniProtKB: A0A8C0Q3X4 (UniProtKB/TrEMBL),   A0A8C0M2Z1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038517621   ⟸   XM_038661693
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M183 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389112   ⟸   XM_038533184
- Peptide Label: isoform X2
- UniProtKB: A0A8C0M2Z1 (UniProtKB/TrEMBL),   A0A8C0Q3X4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038389111   ⟸   XM_038533183
- Peptide Label: isoform X1
- UniProtKB: A0A8C0M183 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCAFP00845015538   ⟸   ENSCAFT00845019844

Promoters
RGD ID:13682800
Promoter ID:EPDNEW_C868
Type:multiple initiation site
Name:HTT_1
Description:huntingtin
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Dog AssemblyChrPosition (strand)Source
CanFam3.1361,221,450 - 61,221,510EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCAFG00000014682 Ensembl, UniProtKB/TrEMBL
  ENSCAFG00030001371 UniProtKB/TrEMBL
  ENSCAFG00040003640 UniProtKB/TrEMBL
  ENSCAFG00845011174 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCAFT00000023312.6 UniProtKB/TrEMBL
  ENSCAFT00030002798.1 UniProtKB/TrEMBL
  ENSCAFT00030002970.1 UniProtKB/TrEMBL
  ENSCAFT00040007592.1 UniProtKB/TrEMBL
  ENSCAFT00845019844 ENTREZGENE
  ENSCAFT00845019844.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.10.10 UniProtKB/TrEMBL
InterPro ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Htt_bridge UniProtKB/TrEMBL
  Htt_C-HEAT_rpt UniProtKB/TrEMBL
  Htt_N_HEAT_rpt-1 UniProtKB/TrEMBL
  Huntingtin UniProtKB/TrEMBL
  Huntingtin_fam UniProtKB/TrEMBL
  Huntingtin_middle-repeat UniProtKB/TrEMBL
KEGG Report cfa:479074 UniProtKB/TrEMBL
NCBI Gene HTT ENTREZGENE
PANTHER HUNTINGTIN UniProtKB/TrEMBL
  PTHR10170 UniProtKB/TrEMBL
Pfam DUF3652 UniProtKB/TrEMBL
  Htt_bridge UniProtKB/TrEMBL
  Htt_C-HEAT UniProtKB/TrEMBL
  Htt_N-HEAT_1 UniProtKB/TrEMBL
PRINTS HUNTINGTIN UniProtKB/TrEMBL
Superfamily-SCOP SSF48371 UniProtKB/TrEMBL
UniProt A0A8C0M183 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0M2Z1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8C0Q3X4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I3RYG3_CANLF UniProtKB/TrEMBL
  A0A8P0SIY4_CANLF UniProtKB/TrEMBL
VGNC ID VGNC:41839 ENTREZGENE