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ONTOLOGY REPORT - ANNOTATIONS

Term:detection of bacterium
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Accession:GO:0016045 term browser browse the term
Definition:The series of events in which a stimulus from a bacterium is received and converted into a molecular signal.
Synonyms:exact_synonym: detection of bacteria
 related_synonym: perception of bacteria;   perception of bacterium
 alt_id: GO:0009598;   GO:0009681


show annotations for term's descendants           Sort by:
detection of bacterium term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Clec4m C-type lectin domain family 4 member M acts_upstream_of_or_within ISO (PMID:14707091) RGD PMID:14707091 NCBI chr12:1,915,902...1,924,529
Ensembl chr12:1,915,919...1,924,539 		JBrowse link
G Naip6 NLR family, apoptosis inhibitory protein 6 involved_in ISO
IBA		 (MGI:5289703|PMID:21874021)
GO_REF:0000033		 RGD
GO_Central		 PMID:21874021 GO_REF:0000033 MGI:5289703 NCBI chr 2:31,507,423...31,559,098
Ensembl chr 2:31,507,424...31,570,542 		JBrowse link
G Nlrc4 NLR family, CARD domain containing 4 involved_in ISO
IBA
ISS		 (PMID:15107016)
GO_REF:0000033
GO_REF:0000024
(MGI:5444805|PMID:22885697)		 RGD
GO_Central
UniProt		 PMID:15107016 PMID:22885697 GO_REF:0000024 GO_REF:0000033 MGI:5444805 NCBI chr 6:20,991,785...21,018,254
Ensembl chr 6:20,995,266...21,018,248 		JBrowse link
G Nod1 nucleotide-binding oligomerization domain containing 1 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr 4:84,060,871...84,111,668
Ensembl chr 4:84,060,880...84,111,404 		JBrowse link
G Nod2 nucleotide-binding oligomerization domain containing 2 involved_in ISO (PMID:15653568) RGD PMID:15653568 NCBI chr19:18,382,369...18,422,817
Ensembl chr19:18,382,439...18,417,177 		JBrowse link
G Parg poly (ADP-ribose) glycohydrolase acts_upstream_of_or_within ISO MGI:3052740 (PMID:15282315) RGD PMID:15282315 NCBI chr16:7,436,429...7,544,276
Ensembl chr16:7,436,476...7,544,273 		JBrowse link
G Pglyrp1 peptidoglycan recognition protein 1 involved_in ISO
IBA		 (PMID:11461926)
GO_REF:0000033		 RGD
GO_Central		 PMID:11461926 GO_REF:0000033 NCBI chr 1:78,531,815...78,537,001
Ensembl chr 1:78,531,815...78,537,001 		JBrowse link
G Pglyrp2 peptidoglycan recognition protein 2 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 7:11,418,674...11,432,162
Ensembl chr 7:11,418,880...11,427,773 		JBrowse link
G Pglyrp3 peptidoglycan recognition protein 3 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:177,479,693...177,490,769
Ensembl chr 2:177,477,407...177,490,736
Ensembl chr 2:177,477,407...177,490,736 		JBrowse link
G Pglyrp4 peptidoglycan recognition protein 4 involved_in ISO (PMID:11461926) RGD PMID:11461926 NCBI chr 2:176,202,654...176,322,859
Ensembl chr 2:176,218,519...176,242,251 		JBrowse link
detection of bacterial lipoprotein term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Ssc5d scavenger receptor cysteine rich family member with 5 domains involved_in ISO
IBA		 (MGI:4939978|PMID:21217009)
GO_REF:0000033		 RGD
GO_Central		 PMID:21217009 GO_REF:0000033 MGI:4939978 NCBI chr 1:68,891,942...68,910,462
Ensembl chr 1:68,891,949...68,909,743 		JBrowse link
detection of diacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
G Tlr6 toll-like receptor 6 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,362,164...43,374,500
Ensembl chr14:43,362,164...43,375,685 		JBrowse link
detection of triacyl bacterial lipopeptide term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Tlr1 toll-like receptor 1 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr14:43,384,127...43,396,765
Ensembl chr14:43,384,932...43,397,125 		JBrowse link
G Tlr2 toll-like receptor 2 acts_upstream_of_or_within ISO (PMID:19931471) RGD PMID:19931471 NCBI chr 2:169,200,620...169,206,819
Ensembl chr 2:169,197,419...169,206,630 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  biological_process 19692
    biological process involved in interspecies interaction between organisms 1946
      response to other organism 1821
        response to bacterium 981
          detection of bacterium 14
            detection of bacterial lipoprotein + 4
            detection of symbiotic bacterium 0
Path 2
Term Annotations click to browse term
  biological_process 19692
    response to stimulus 10511
      response to external stimulus 2701
        response to external biotic stimulus 1825
          response to other organism 1821
            response to bacterium 981
              detection of bacterium 14
                detection of bacterial lipoprotein + 4
                detection of symbiotic bacterium 0
paths to the root