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CHEBI ONTOLOGY - ANNOTATIONS

The Chemical Entities of Biological Interest (ChEBI) ontology is downloaded weekly from EMBL-EBI at http://www.ebi.ac.uk/chebi/. The data is made available under the Creative Commons License (CC BY 3.0, http://creativecommons.org/licenses/by/3.0/). For more information see: Degtyarenko et al. (2008) ChEBI: a database and ontology for chemical entities of biological interest. Nucleic Acids Res. 36, D344–D350.
Term:CX-5461
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Accession:CHEBI:156287 term browser browse the term
Definition:An organic heterotetracyclic compound that is 5-oxo-5H-[1,3]benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxylic acid substituted by a 4-methyl-1,4-diazepan-1-yl group at position 2 and in which the carboxy group at position 6 is substituted by a [(5-methylpyrazin-2-yl)methyl]nitrilo group. An inhibitor of ribosomal RNA (rRNA) synthesis which specifically inhibits RNA polymerase I-driven transcription of rRNA in several cancer cell lines. It is currently in phase I/II clinical trials for advanced hematologic malignancies and triple-negative breast cancer with BRCA1/2 mutation.
Synonyms:exact_synonym: 2-(4-methyl-1,4-diazepan-1-yl)-N-[(5-methylpyrazin-2-yl)methyl]-5-oxo-5H-[1,3]benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxamide
 related_synonym: 2-(hexahydro-4-methyl-1H-1,4-diazepin-1-yl)-N-[(5-methyl-2-pyrazinyl)methyl]-5-oxo-5H-benzothiazolo[3,2-a][1,8]naphthyridine-6-carboxamide;   CX5461;   Formula=C27H27N7O2S;   InChI=1S/C27H27N7O2S/c1-17-14-29-18(15-28-17)16-30-26(36)23-24(35)19-8-9-22(33-11-5-10-32(2)12-13-33)31-25(19)34-20-6-3-4-7-21(20)37-27(23)34/h3-4,6-9,14-15H,5,10-13,16H2,1-2H3,(H,30,36);   InChIKey=XGPBJCHFROADCK-UHFFFAOYSA-N;   SMILES=CN1CCCN(CC1)C1=NC2=C(C=C1)C(=O)C(C(=O)NCC1=CN=C(C)C=N1)=C1SC3=C(C=CC=C3)N21
 alt_id: CHEBI:95090
 xref: CAS:1138549-36-6;   LINCS:LSM-6342
 xref_mesh: MESH:C557717
 xref: PMID:21159662;   PMID:30016731;   PMID:30542116;   PMID:30879743;   PMID:31092402;   PMID:31183313;   PMID:31210846;   PMID:31341008;   PMID:31557908;   PMID:31817270;   PMID:32041867;   PMID:32414869;   PMID:32457376;   PMID:32719798


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CX-5461 term browser
Symbol Object Name Qualifiers Evidence Notes Source PubMed Reference(s) RGD Reference(s) Position
G Brca2 BRCA2, DNA repair associated affects response to substance
multiple interactions		 ISO BRCA2 protein affects the susceptibility to CX 5461
BRCA2 protein affects the reaction [CX 5461 results in increased expression of TP53BP1 protein]; BRCA2 protein affects the reaction [CX 5461 results in increased phosphorylation of RPA2 protein]		 CTD PMID:28211448 NCBI chr12:59,492...103,789
Ensembl chr12:59,819...100,567 		JBrowse link
G Chek1 checkpoint kinase 1 increases phosphorylation ISO CX 5461 results in increased phosphorylation of CHEK1 protein CTD PMID:28211448 NCBI chr 8:36,420,565...36,443,477
Ensembl chr 8:36,420,569...36,441,009 		JBrowse link
G Chek2 checkpoint kinase 2 increases phosphorylation ISO CX 5461 results in increased phosphorylation of CHEK2 protein CTD PMID:28211448 NCBI chr12:45,788,823...45,821,382
Ensembl chr12:45,788,827...45,821,286 		JBrowse link
G H2ax H2A.X variant histone increases expression ISO CX 5461 results in increased expression of H2AX protein CTD PMID:28211448 NCBI chr 8:44,671,907...44,673,262
Ensembl chr 8:44,671,786...44,673,239 		JBrowse link
G Parp1 poly (ADP-ribose) polymerase 1 increases cleavage ISO CX 5461 results in increased cleavage of PARP1 protein CTD PMID:32799625 NCBI chr13:92,307,593...92,339,406
Ensembl chr13:92,307,586...92,339,404 		JBrowse link
G Rad51 RAD51 recombinase increases expression ISO CX 5461 results in increased expression of RAD51 protein CTD PMID:28211448 NCBI chr 3:106,099,753...106,125,038
Ensembl chr 3:106,100,381...106,125,035 		JBrowse link
G Rpa2 replication protein A2 increases phosphorylation
multiple interactions		 ISO CX 5461 results in increased phosphorylation of RPA2 protein
BRCA2 protein affects the reaction [CX 5461 results in increased phosphorylation of RPA2 protein]		 CTD PMID:28211448 NCBI chr 5:144,976,789...144,989,445
Ensembl chr 5:144,976,748...144,987,350 		JBrowse link
G Tp53bp1 tumor protein p53 binding protein 1 multiple interactions
increases expression		 ISO BRCA2 protein affects the reaction [CX 5461 results in increased expression of TP53BP1 protein] CTD PMID:28211448 NCBI chr 3:108,166,574...108,270,229
Ensembl chr 3:108,169,980...108,269,822 		JBrowse link
Term paths to the root
Path 1
Term Annotations click to browse term
  CHEBI ontology 19808
    role 19784
      biological role 19782
        biochemical role 19496
          apoptosis inducer 13624
            CX-5461 8
Path 2
Term Annotations click to browse term
  CHEBI ontology 19808
    subatomic particle 19806
      composite particle 19806
        hadron 19806
          baryon 19806
            nucleon 19806
              atomic nucleus 19806
                atom 19806
                  main group element atom 19756
                    p-block element atom 19756
                      carbon group element atom 19705
                        carbon atom 19702
                          organic molecular entity 19702
                            heteroorganic entity 19460
                              organochalcogen compound 19224
                                organooxygen compound 19141
                                  carbon oxoacid 18612
                                    carboxylic acid 18609
                                      carboacyl group 17677
                                        univalent carboacyl group 17677
                                          carbamoyl group 17526
                                            carboxamide 17526
                                              secondary carboxamide 1219
                                                CX-5461 8
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