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Gene: Olig1 (oligodendrocyte transcription factor 1) Chinchilla lanigera

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Symbol:

Olig1

Name:

oligodendrocyte transcription factor 1

RGD ID:

8894788

Description:

INVOLVED IN neuron fate commitment (ortholog); oligodendrocyte development (ortholog); ASSOCIATED WITH Experimental Autoimmune Encephalomyelitis (ortholog)

Type:

protein-coding

RefSeq Status:

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

ChiLan1.0 - Chinchilla ChiLan1.0 Assembly

Position:

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	32,471,516 - 32,479,079 (+)	Ensembl
ChiLan1.0	NW_004955407	32,471,501 - 32,480,358 (+)	NCBI	ChiLan1.0	ChiLan1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Autoimmune Encephalomyelitis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

neuron fate commitment (ISO)

oligodendrocyte development (ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Transitive Annotation Pipeline	Automated assignment of GO, PW and RDO ISO annotations across species

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

Olig1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955407	32,471,516 - 32,479,079 (+)	Ensembl
ChiLan1.0	NW_004955407	32,471,501 - 32,480,358 (+)	NCBI	ChiLan1.0	ChiLan1.0

OLIG1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	21	33,070,141 - 33,072,413 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	21	33,070,141 - 33,072,413 (+)	Ensembl			hg38	GRCh38
GRCh37	21	34,442,447 - 34,444,719 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	21	33,364,443 - 33,366,596 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	21	33,364,442 - 33,366,595	NCBI
Celera	21	19,628,035 - 19,630,313 (+)	NCBI		Celera
Cytogenetic Map	21	q22.11	NCBI
HuRef	21	19,853,692 - 19,855,474 (+)	NCBI		HuRef
CHM1_1	21	34,004,519 - 34,006,797 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	21	31,438,351 - 31,440,623 (+)	NCBI		T2T-CHM13v2.0

Olig1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	91,066,657 - 91,068,827 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	91,066,660 - 91,068,821 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	16	91,269,769 - 91,271,939 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	91,269,772 - 91,271,933 (+)	Ensembl			mm10	GRCm38
MGSCv37	16	91,270,014 - 91,272,184 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	16	91,158,628 - 91,160,798 (+)	NCBI		MGSCv36	mm8
Celera	16	92,345,636 - 92,347,806 (+)	NCBI		Celera
Cytogenetic Map	16	C3.3	NCBI
cM Map	16	52.67	NCBI

Olig1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	44,000,450 - 44,002,592 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	11	44,000,281 - 44,002,592 (+)	Ensembl				GRCr8
mRatBN7.2	11	30,514,379 - 30,516,521 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	30,514,379 - 30,516,521 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	11	39,201,413 - 39,203,556 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	31,872,852 - 31,874,995 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	31,047,260 - 31,049,404 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	11	45,870,232 - 45,872,374 (+)	NCBI		Dahl_SR_JrHsd
Lyon_Normotensive	11	44,164,237 - 44,166,379 (+)	NCBI		Lyon_Normotensive
Lyon_Hypertensive	11	45,083,444 - 45,085,586 (+)	NCBI		Lyon_Hypertensive
F344_StmMcwi	11	43,812,635 - 43,814,777 (+)	NCBI		F344_StmMcwi
Rnor_6.0	11	31,428,377 - 31,430,519 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	31,428,358 - 31,430,517 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	11	35,037,423 - 35,039,565 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	11	31,244,279 - 31,246,421 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	11	30,181,398 - 30,183,540 (+)	NCBI		Celera
RGSC_v3.1	11	31,283,750 - 31,285,889 (+)	NCBI
Cytogenetic Map	11	q11	NCBI

OLIG1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	22	29,182,603 - 29,184,920 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	21	24,042,532 - 24,044,851 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	21	19,432,165 - 19,434,481 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3

OLIG1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	31	27,718,925 - 27,721,301 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	31	27,719,026 - 27,719,862 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	31	27,712,713 - 27,715,091 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	31	27,922,967 - 27,925,345 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	31	27,922,930 - 27,925,359 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	31	27,790,717 - 27,793,095 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	31	27,800,806 - 27,803,184 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	31	28,303,802 - 28,306,183 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Olig1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404971	28,256,598 - 28,258,891 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936500	9,210,303 - 9,211,097 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936500	9,208,932 - 9,211,182 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OLIG1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	196,644,059 - 196,646,403 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	196,644,065 - 196,646,406 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	206,712,479 - 206,714,811 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OLIG1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	59,107,916 - 59,110,601 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	59,109,287 - 59,110,102 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666071	1,646,727 - 1,649,437 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Olig1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624745	21,308,928 - 21,309,722 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624745	21,308,831 - 21,310,898 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Olig1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	53,332,777 - 53,334,967 (-)	NCBI		Rrattus_CSIRO_v1

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005375675	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AGCD01007677	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01007678	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AGCD01007679	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GBDF01136891	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCLAT00000015003 ⟹ ENSCLAP00000014844

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0 Ensembl	NW_004955407	32,471,516 - 32,479,079 (+)	Ensembl

RefSeq Acc Id:

XM_005375675 ⟹ XP_005375732

Type:

CODING

Position:

Chinchilla Assembly	Chr	Position (strand)	Source
ChiLan1.0	NW_004955407	32,471,501 - 32,480,358 (+)	NCBI

Sequence:

show sequence

CCCAACGCCTCCCAGATGTACTATGCGGTTTCCCAGGCGCGCGTGAACGCGGCCCCGGTGACCA
TGCTGCGGCCACAGCGGCCCGGAGAAGTGCAGCTCGGGGCCTCCCTGTACGAGCTGGTGGGCTA
CCGGCAGCCGCCTTCCTCCTCCTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCACTTCCTCTTTC
TCCTGCACCACGGCGCCCCTCCTCCTTCCCAAGGCTGCGCGCGAGAAGCCCGAGGCTCCCGCCG
AGCCTCCCGGCACCGGCCCTGGGTCCGGCGCGCACGCGAGCGCCCGGACAGACGCCAAGGAGGA
GCAGCAGCAGCAACTGCGGCGCAAGATCAACAGCCGCGAGCGGAAGCGCATGCAGGACCTGAAC
CTGGCCATGGACGCGCTGCGCGAGGTCATCCTGCCCTACTCGGCGGCGCACTGCCAGGGCGCGC
CGGGCCGCAAGCTCTCCAAGATCGCCACGCTGCTGCTTGCCCGAAACTACATCCTGCTGTTGGG
CAGCTCGCTGCAGGAGCTGCGCCGGGCGCTGGGCGAGGGCGCAGGGCCCGCCGCTCCGCGCCTG
CTGCTGGCCGGCCTGCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGGGCGCTG
TGGGGCCCCCAGACGCGCTGCGCCCGGCCAAGTACCTGTCGCTGGCGCTGGACGAGCCGCCCTG
CGGCCAGTTCGCGCTCCCGGGCGGTGCGGCCACCGGCCCCGGCCTCTGCACTTGCGCCGTGTGC
AAGTTCCCGCACCTGGTCCCCGCAGGCCTGGGCCTGGCCGCGGTGCAGGCTCAGTTCTCCAAGT
GAGGGCCGTGCTGGGCCCGGGAAGGGGCGCGACCCCGCTCGGGCCTCCCGCCGCCCAGCTTCTT
CGCGCCCCTGCGCCCTAAGTCCAGGGAGAGCGAGCCCGTGTAAGGAGGGCATTTGGAACCATTT
CTGGACCAGAGGGAGGGACTATGGGGAGCCTCGTTCCCTGCCCGCAGCCCTGGGAAATGAAGGT
GACCCGAGCAGCGGACGTTCCTTGGAGCGTCGGAGCTGTTTGCTCTCCAGGTGGATTCCTCCTG
CTTAGGACAGAAAGTGAGCGCACCCCCCACTCTCACCCAGCACGTCGCTCTCCCTGTCCCTGGA
GCTGTGAGCTTCTCGGGGCTAGTGTGGATTTTAGGAGGCGGTGCTGTCGCTTCGGATCGCCCAG
GTGCGGCGAGAGGCCCTCCCTGAGCGCGACCTCCCGGGAGTGCCTTGTCCAGGCCAAGCGACTG
CTTCCAACCTGTCCCCGCCGGCCAGGTTCTGTCAAAGGAGGCTGCCAGACTCCAGGAGACCGAG
AAGGACCAGTTATTCAGTGCAGACCGTCAGGGCCGCCGCAGATGCACTGACCCTCGGCGGCCTC
GGCGTCTCCGAGCCGCAGGTGCGGGCAGCGACAGTCCCAGGGTCGCTGGGTGTGCAGGATTGGA
AATTCGGTCCGCTTTTGTAGCCAGGAGATTAGAATGCTATTTTAAAGCATCGATCCTGGGGGTC
TTCTTAGAAAGACAGGTTAGGACTCAGAATCACCTTTCGTCTCCCCTTCCCGAAGGTAGCCTAG
CCAACTTTTGAGCTTATGTCAAAACAAAAAGCAACCACCGTTCACGCCATCAGAGTTCCGCATT
TACTAAAATAGGTAACAAGGCATTTCGCTGTCGCCTGTCTTGCGAAGCTCTCTAATTAACCTTC
TCATTAGAAGATGCGGAGGAGGAGCAGCCGAGCCCAAACTGTGCGCGGCTCGGCTCGGCTCGGC
GTGTCCAGCTGTGGTGGCGACGGCGGACGGCGCTTTCTGCCGTCCCTCCTCACGCTTGCGGGGT
ACTGTACCAGCGCGCCCCGCGGGTGGTCCTAGTCGCCGCTTAGCAGCTGAAATATACTTAGTGA
GCGGTCCCGATTTGTTACGGCGTTAACAAAGTACCCAAGGTTATTTTGTGATCTTTCAGCTGTT
TGCTTTGGTTTTTATGTCAACAGTATTTGGTGGTCCATAGTAGCCAAATTTAACTGGCGTTTTA
TTTTACCTCTAACTTTGTTCTCTTGAGCTGTACAGAAACAACAAAATAAAACATTTGAAGTCTA
A

hide sequence

Protein Sequences


Protein RefSeqs	XP_005375732	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCLAP00000014844.1

RefSeq Acc Id:

XP_005375732 ⟸ XM_005375675

- UniProtKB:

A0A8C2VFH3 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MYYAVSQARVNAAPVTMLRPQRPGEVQLGASLYELVGYRQPPSSSSSSSSSSSSSTSSFSCTTA
PLLLPKAAREKPEAPAEPPGTGPGSGAHASARTDAKEEQQQQLRRKINSRERKRMQDLNLAMDA
LREVILPYSAAHCQGAPGRKLSKIATLLLARNYILLLGSSLQELRRALGEGAGPAAPRLLLAGL
PXXXXXXXXXXXXPGAVGPPDALRPAKYLSLALDEPPCGQFALPGGAATGPGLCTCAVCKFPHL
VPAGLGLAAVQAQFSK

hide sequence

Ensembl Acc Id:

ENSCLAP00000014844 ⟸ ENSCLAT00000015003

Protein Domains

bHLH

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCLAG00000010235	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSCLAT00000015003.1	UniProtKB/TrEMBL
Gene3D-CATH	4.10.280.10	UniProtKB/TrEMBL
InterPro	bHLH_dom	UniProtKB/TrEMBL
	bHLH_transcription_factors	UniProtKB/TrEMBL
	HLH_DNA-bd_sf	UniProtKB/TrEMBL
	Olig1	UniProtKB/TrEMBL
NCBI Gene	Olig1	ENTREZGENE
PANTHER	BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED	UniProtKB/TrEMBL
	PTHR19290:SF7	UniProtKB/TrEMBL
Pfam	HLH	UniProtKB/TrEMBL
PROSITE	BHLH	UniProtKB/TrEMBL
SMART	HLH	UniProtKB/TrEMBL
Superfamily-SCOP	SSF47459	UniProtKB/TrEMBL
UniProt	A0A8C2VFH3	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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