Lcn4l3 (lipocalin 4 like 3) - Rat Genome Database

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Gene: Lcn4l3 (lipocalin 4 like 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Lcn4l3
Name: lipocalin 4 like 3
RGD ID: 7725305
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07051251.1; LOC102552073; uncharacterized LOC102552073; vomeronasal secretory protein 2-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8329,877,432 - 29,881,640 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.239,480,271 - 9,483,554 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl39,479,235 - 9,483,553 (+)EnsemblmRatBN7.2
Rnor_6.034,183,510 - 4,186,491 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl34,106,477 - 4,108,613 (+)NCBIrn6Rnor6.0
Rnor_5.039,542,376 - 9,545,195 (+)NCBIRnor_5.0Rnor_5.0rn5
Cytogenetic Map3p13NCBI
JBrowse:




References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.

Genomics

Variants

.
Variants in Lcn4l3
57 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1558647Cm46Cardiac mass QTL 465.40.0000055heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
1358357Srcrtb1Stress Responsive Cort Basal QTL 16.360.002blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)32905627547904329Rat
6893355Bw101Body weight QTL 1010.40.38body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10450811Scl73Serum cholesterol level QTL 734.70.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
2292615Ept17Estrogen-induced pituitary tumorigenesis QTL 176.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat
10450808Scl72Serum cholesterol level QTL 724.40.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
10450806Scl71Serum cholesterol level QTL 715.80.001blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)3290432947904329Rat
1558654Bw56Body weight QTL 564.50.0000171body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
1298526Arunc3Aerobic running capacity QTL 32.2exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)3612543751125437Rat
631545Bp85Blood pressure QTL 853.1arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)3136721849Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
631679Cm10Cardiac mass QTL 107.340.0001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)3655634751556347Rat
1558657Cm43Cardiac mass QTL 436.63e-08heart mass (VT:0007028)heart wet weight (CMO:0000069)32267715050766390Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
6893363Bw105Body weight QTL 1052.60.0036body mass (VT:0001259)body weight (CMO:0000012)3576639050766390Rat
70203Gcr2Gastric cancer resistance QTL 22.6stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)32905627547904329Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat
1358185Ept6Estrogen-induced pituitary tumorigenesis QTL 66.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)3655634751556347Rat


Expression

RNA-SEQ Expression

circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
sensory system
visual system
5 2 1 9 6 2 3 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000078985   ⟹   ENSRNOP00000075546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl39,479,235 - 9,483,553 (+)Ensembl
RefSeq Acc Id: XM_039106051   ⟹   XP_038961979
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8329,877,432 - 29,881,640 (+)NCBI
mRatBN7.239,480,271 - 9,483,554 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038961979 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038961979   ⟸   XM_039106051
- UniProtKB: A0A0G2KAV9 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000075546   ⟸   ENSRNOT00000078985

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2KAV9-F1-model_v2 AlphaFold A0A0G2KAV9 1-136 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-50351 BioCyc
Ensembl Genes ENSRNOG00000056471 Ensembl
NCBI Gene LOC102552073 ENTREZGENE
PhenoGen Lcn4l3 PhenoGen
RatGTEx ENSRNOG00000056471 RatGTEx
UniProt A0A0G2KAV9 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Lcn4l3  lipocalin 4 like 3  LOC102552073  uncharacterized LOC102552073  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC102552073  uncharacterized LOC102552073  AABR07051251.1    Data merged from RGD:15010269 737654 PROVISIONAL
2019-11-08 AABR07051251.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2013-12-18 LOC102552073  uncharacterized LOC102552073      Symbol and Name status set to provisional 70820 PROVISIONAL