LOC102547836 (uncharacterized LOC102547836) - Rat Genome Database

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Gene: LOC102547836 (uncharacterized LOC102547836) Rattus norvegicus
Analyze
Symbol: LOC102547836
Name: uncharacterized LOC102547836
RGD ID: 7668419
Description:
Type: ncrna
RefSeq Status: MODEL
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87136,436,852 - 136,454,240 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.27134,558,487 - 134,576,215 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.07145,049,261 - 145,066,697 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.07142,828,376 - 142,845,716 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera7130,982,865 - 131,000,301 (+)NCBICelera
Cytogenetic Map7q36NCBI
JBrowse:




References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354582Stl11Serum triglyceride level QTL 113.42blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7121393075137014596Rat
634331Pia17Pristane induced arthritis QTL 174.7joint integrity trait (VT:0010548)arthritic paw count (CMO:0001460)7132099939137014596Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat
1357339Stl14Serum triglyceride level QTL 143.450.0001blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)7135371291137014596Rat


Expression

RNA-SEQ Expression

circulatory system
ectoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
reproductive system
sensory system
visual system
1 13 1 2 2 13 2 5 5

Sequence


RefSeq Acc Id: XR_001839055
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87136,436,858 - 136,454,240 (+)NCBI
mRatBN7.27134,558,542 - 134,576,211 (+)NCBI
Rnor_6.07145,049,261 - 145,066,696 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005487438
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87136,436,856 - 136,454,240 (+)NCBI
mRatBN7.27134,558,542 - 134,576,215 (+)NCBI
RefSeq Acc Id: XR_010053120
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87136,436,852 - 136,454,240 (+)NCBI
RefSeq Acc Id: XR_010053121
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87136,436,852 - 136,454,240 (+)NCBI
RefSeq Acc Id: XR_010053122
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87136,436,970 - 136,439,210 (+)NCBI
RefSeq Acc Id: XR_010053123
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87136,436,853 - 136,439,210 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31871 BioCyc
NCBI Gene LOC102547836 ENTREZGENE
PhenoGen LOC102547836 PhenoGen
RNAcentral URS0000CCF6D4 RNACentral
  URS0000CD0445 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-12-18 LOC102547836  uncharacterized LOC102547836      Symbol and Name status set to provisional 70820 PROVISIONAL