LOC120095722 (U7 small nuclear RNA) - Rat Genome Database

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Gene: LOC120095722 (U7 small nuclear RNA) Rattus norvegicus
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Symbol: LOC120095722
Name: U7 small nuclear RNA
RGD ID: 41323621
Description:
Type: snrna
RefSeq Status: MODEL
Previously known as: U7
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81114,998,259 - 14,998,321 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1114,998,259 - 14,998,321 (-)EnsemblGRCr8
mRatBN7.2111,551,740 - 1,551,802 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl111,551,740 - 1,551,802 (-)EnsemblmRatBN7.2
Rnor_6.0 Ensembl11861,322 - 861,385 (-)NCBIrn6Rnor6.0
Cytogenetic Map11p12NCBI
JBrowse:




References

Genomics


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11381815448818154Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XR_005491518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000088071
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1114,998,259 - 14,998,321 (-)Ensembl
mRatBN7.2 Ensembl111,551,740 - 1,551,802 (-)Ensembl
RefSeq Acc Id: XR_005491518
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81114,998,259 - 14,998,321 (-)NCBI
mRatBN7.2111,551,740 - 1,551,802 (-)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22329 BioCyc
Ensembl Genes ENSRNOG00000054363 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000088071 ENTREZGENE
NCBI Gene LOC120095722 ENTREZGENE
PhenoGen LOC120095722 PhenoGen
RatGTEx ENSRNOG00000054363 RatGTEx
RNAcentral URS00006425E5 RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 LOC120095722  U7 small nuclear RNA  U7  U7 small nuclear RNA  Data merged from RGD:15008625 737654 PROVISIONAL
2021-01-27 LOC120095722  U7 small nuclear RNA      Symbol and Name status set to provisional 70820 PROVISIONAL
2019-11-08 U7  U7 small nuclear RNA      Symbol and Name status set to provisional 45752 PROVISIONAL