Mir7-1 (microRNA 7-1) - Rat Genome Database

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Gene: Mir7-1 (microRNA 7-1) Rattus norvegicus
Analyze
Symbol: Mir7-1
Name: microRNA 7-1
RGD ID: 2325464
Description: Predicted to act upstream of or within several processes, including cellular response to leukemia inhibitory factor; epithelial cell differentiation; and negative regulation of macromolecule metabolic process. Predicted to be part of RISC complex. Orthologous to human MIR7-1 (microRNA 7-1); INTERACTS WITH aflatoxin B1; atrazine; cisplatin.
Type: ncrna (Ensembl: miRNA)
RefSeq Status: PROVISIONAL
Previously known as: microRNA 7a-1; Mir7a-1; Mir7a1; rno-mir-7a-1
RGD Orthologs
Human
Mouse
Dog
Pig
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,278,692 - 6,278,788 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl176,278,692 - 6,278,788 (+)EnsemblGRCr8
mRatBN7.2176,273,264 - 6,273,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,273,264 - 6,273,360 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx176,295,979 - 6,296,075 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,829,327 - 7,829,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,292,351 - 6,292,447 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd176,288,088 - 6,288,184 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive176,271,414 - 6,271,510 (+)NCBILyon_Normotensive
Lyon_Hypertensive176,276,180 - 6,276,276 (+)NCBILyon_Hypertensive
F344_StmMcwi176,654,161 - 6,654,257 (+)NCBIF344_StmMcwi
Rnor_6.0176,675,016 - 6,675,112 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl176,675,016 - 6,675,112 (+)Ensemblrn6Rnor6.0
Rnor_5.0178,879,389 - 8,879,485 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera176,382,983 - 6,383,079 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
RISC complex  (ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:14691248   PMID:15345052   PMID:16381832   PMID:17604727   PMID:20106983   PMID:20403161   PMID:20439489   PMID:21247879   PMID:21307095   PMID:21993888   PMID:22764048   PMID:22775435  
PMID:23185045   PMID:23390484   PMID:23861446   PMID:24205035   PMID:24594984   PMID:25858512   PMID:30987515   PMID:31264206   PMID:31619588   PMID:31957813   PMID:33287916   PMID:36227663  
PMID:38438086  


Genomics

Comparative Map Data
Mir7-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8176,278,692 - 6,278,788 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl176,278,692 - 6,278,788 (+)EnsemblGRCr8
mRatBN7.2176,273,264 - 6,273,360 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl176,273,264 - 6,273,360 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx176,295,979 - 6,296,075 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0177,829,327 - 7,829,423 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0176,292,351 - 6,292,447 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd176,288,088 - 6,288,184 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive176,271,414 - 6,271,510 (+)NCBILyon_Normotensive
Lyon_Hypertensive176,276,180 - 6,276,276 (+)NCBILyon_Hypertensive
F344_StmMcwi176,654,161 - 6,654,257 (+)NCBIF344_StmMcwi
Rnor_6.0176,675,016 - 6,675,112 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl176,675,016 - 6,675,112 (+)Ensemblrn6Rnor6.0
Rnor_5.0178,879,389 - 8,879,485 (+)NCBIRnor_5.0Rnor_5.0rn5
Celera176,382,983 - 6,383,079 (+)NCBICelera
Cytogenetic Map17p14NCBI
MIR7-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38983,969,748 - 83,969,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl983,969,748 - 83,969,857 (-)Ensemblhg38GRCh38
GRCh37986,584,663 - 86,584,772 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36985,774,482 - 85,774,591 (-)NCBIBuild 36Build 36hg18NCBI36
Celera957,155,676 - 57,155,785 (-)NCBICelera
Cytogenetic Map9q21.32NCBI
HuRef956,410,296 - 56,410,405 (-)NCBIHuRef
CHM1_1986,731,260 - 86,731,369 (-)NCBICHM1_1
T2T-CHM13v2.0996,120,029 - 96,120,138 (-)NCBIT2T-CHM13v2.0
Mir7-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,540,593 - 58,540,700 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1358,540,593 - 58,540,700 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381358,392,779 - 58,392,886 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,392,779 - 58,392,886 (-)Ensemblmm10GRCm38
MGSCv371358,494,140 - 58,494,247 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
Celera1359,455,142 - 59,455,249 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1331.04NCBI
MIR7-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,509,765 - 75,509,828 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,509,743 - 75,509,851 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha176,159,656 - 76,159,719 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0175,811,059 - 75,811,122 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl175,811,037 - 75,811,145 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1175,625,031 - 75,625,094 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0175,387,843 - 75,387,906 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0176,090,715 - 76,090,778 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
MIR7-2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1030,986,180 - 30,986,288 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11030,986,180 - 30,986,288 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21035,113,341 - 35,113,449 (+)NCBISscrofa10.2Sscrofa10.2susScr3

miRNA Target Status (No longer updated)

Predicted Targets
Summary Value
Count of predictions:3536
Count of gene targets:2629
Count of transcripts:2855
Interacting mature miRNAs:rno-miR-7a-1-3p
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat

Markers in Region
HNRPK-1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8176,278,333 - 6,279,127 (+)Marker Load Pipeline
mRatBN7.2176,272,905 - 6,273,699 (+)MAPPERmRatBN7.2
Rnor_6.0176,674,658 - 6,675,451NCBIRnor6.0
Rnor_5.0178,879,031 - 8,879,824UniSTSRnor5.0
RGSC_v3.41712,203,724 - 12,204,517UniSTSRGSC3.4
Celera176,382,625 - 6,383,418UniSTS
Cytogenetic Map17p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 10 49 105 79 78 47 25 47 6 195 96 85 35 50 31 2 2

Sequence


Ensembl Acc Id: ENSRNOT00000053736
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl176,278,692 - 6,278,788 (+)Ensembl
mRatBN7.2 Ensembl176,273,264 - 6,273,360 (+)Ensembl
Rnor_6.0 Ensembl176,675,016 - 6,675,112 (+)Ensembl
RefSeq Acc Id: NR_031795
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8176,278,692 - 6,278,788 (+)NCBI
mRatBN7.2176,273,264 - 6,273,360 (+)NCBI
Dahl_SR_JrHsd176,288,088 - 6,288,184 (+)NCBI
Lyon_Normotensive176,271,414 - 6,271,510 (+)NCBI
Lyon_Hypertensive176,276,180 - 6,276,276 (+)NCBI
F344_StmMcwi176,654,161 - 6,654,257 (+)NCBI
Rnor_6.0176,675,016 - 6,675,112 (+)NCBI
Rnor_5.0178,879,389 - 8,879,485 (+)NCBI
Celera176,382,983 - 6,383,079 (+)NCBI
Sequence:
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:2325464 AgrOrtholog
BioCyc Gene G2FUF-10355 BioCyc
Ensembl Genes ENSRNOG00000035613 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000053736 ENTREZGENE
miRBase MI0000641 ENTREZGENE
NCBI Gene 100314148 ENTREZGENE
PhenoGen Mir7-1 PhenoGen
RatGTEx ENSRNOG00000035613 RatGTEx
RNAcentral URS0000591950 RNACentral
  URS000075A715 RNACentral
  URS000075D16A RNACentral


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2020-07-06 Mir7-1  microRNA 7-1  Mir7a1  microRNA 7a-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2017-07-25 Mir7a1  microRNA 7a-1  Mir7a-1  microRNA 7a-1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-04-09 Mir7a-1  microRNA 7a-1  Mir7a-1  microRNA mir-7a-1  Name updated 61478 APPROVED
2010-06-02 Mir7a-1  microRNA mir-7a-1      Symbol and Name status set to provisional 70820 PROVISIONAL