Mir7-1 (microRNA 7-1) - Rat Genome Database

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Gene: Mir7-1 (microRNA 7-1) Mus musculus
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Symbol: Mir7-1
Name: microRNA 7-1
RGD ID: 1607619
MGI Page MGI
Description: Acts upstream of or within several processes, including cellular response to lipid; columnar/cuboidal epithelial cell differentiation; and negative regulation of macromolecule metabolic process. Part of RISC complex. Is expressed in several structures, including brain; foregut-midgut junction; liver; retina; and thymus. Orthologous to human MIR7-1 (microRNA 7-1) and MIR7-2 (microRNA 7-2).
Type: ncrna
RefSeq Status: PROVISIONAL
Also known as: Mir; miR-; mir-7a-1; miR-7a1; Mir7a1; Mirn; Mirn7-1; mmu-miR-; mmu-mir-7; mmu-mir-7-1; mmu-miR-7a1
RGD Orthologs
Human
Rat
Dog
Pig
Alliance Genes
More Info more info ...
Latest Assembly: GRCm38 - Mouse Genome Assembly GRCm38
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,540,593 - 58,540,700 (-)NCBIGRCm39mm39
GRCm39 Ensembl1358,540,593 - 58,540,700 (-)Ensembl
GRCm381358,392,779 - 58,392,886 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,392,779 - 58,392,886 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,494,140 - 58,494,247 (-)NCBIGRCm37mm9NCBIm37
Celera1359,455,142 - 59,455,249 (-)NCBICelera
Cytogenetic Map13B1NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

Additional References at PubMed
PMID:12624257   PMID:15538371   PMID:15634332   PMID:16369549   PMID:16381832   PMID:17369397   PMID:17597072   PMID:17604727   PMID:17936263   PMID:19628698   PMID:20106983   PMID:20215419  
PMID:20230785   PMID:20413612   PMID:20439489   PMID:21037258   PMID:21247879   PMID:21267068   PMID:21307095   PMID:21822254   PMID:21993888   PMID:22139078   PMID:22144232   PMID:22186137  
PMID:22442111   PMID:22661094   PMID:22696677   PMID:22729175   PMID:22764048   PMID:22775435   PMID:23185045   PMID:23223022   PMID:23390484   PMID:23446348   PMID:23940725   PMID:24205035  
PMID:24789908   PMID:24813889   PMID:24925797   PMID:25048085   PMID:25334070   PMID:25858512   PMID:26122050   PMID:26211738   PMID:26572867   PMID:26676570   PMID:26998750   PMID:27084336  
PMID:27286445   PMID:27384152   PMID:27707753   PMID:28218624   PMID:28353063   PMID:28798046   PMID:29663842   PMID:29887379   PMID:30538177   PMID:30578296   PMID:30982661   PMID:31044367  
PMID:31166710   PMID:31494796   PMID:31756561   PMID:31786325   PMID:32539181  


Genomics

Comparative Map Data
Mir7-1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391358,540,593 - 58,540,700 (-)NCBIGRCm39mm39
GRCm39 Ensembl1358,540,593 - 58,540,700 (-)Ensembl
GRCm381358,392,779 - 58,392,886 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1358,392,779 - 58,392,886 (-)EnsemblGRCm38mm10GRCm38
MGSCv371358,494,140 - 58,494,247 (-)NCBIGRCm37mm9NCBIm37
Celera1359,455,142 - 59,455,249 (-)NCBICelera
Cytogenetic Map13B1NCBI
MIR7-1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38.p13 Ensembl983,969,748 - 83,969,857 (-)EnsemblGRCh38hg38GRCh38
GRCh38983,969,748 - 83,969,857 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh37986,584,663 - 86,584,772 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36985,774,482 - 85,774,591 (-)NCBINCBI36hg18NCBI36
Celera957,155,676 - 57,155,785 (-)NCBI
Cytogenetic Map9q21.32NCBI
HuRef956,410,296 - 56,410,405 (-)NCBIHuRef
CHM1_1986,731,260 - 86,731,369 (-)NCBICHM1_1
Mir7-1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2176,273,264 - 6,273,360 (+)NCBImRatBN7.2
Rnor_6.0 Ensembl176,675,016 - 6,675,112 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0176,675,016 - 6,675,112 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0178,879,389 - 8,879,485 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera176,382,983 - 6,383,079 (+)NCBICelera
Cytogenetic Map17p14NCBI
MIR7-1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1175,509,765 - 75,509,828 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl175,509,743 - 75,509,851 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha176,159,656 - 76,159,719 (+)NCBI
ROS_Cfam_1.0175,811,059 - 75,811,122 (+)NCBI
UMICH_Zoey_3.1175,625,031 - 75,625,094 (+)NCBI
UNSW_CanFamBas_1.0175,387,843 - 75,387,906 (+)NCBI
UU_Cfam_GSD_1.0176,090,715 - 76,090,778 (+)NCBI
MIR7-2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1030,986,180 - 30,986,288 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11030,986,180 - 30,986,288 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21035,113,341 - 35,113,449 (+)NCBISscrofa10.2Sscrofa10.2susScr3


QTLs in Region (GRCm38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301666Eae13_msusceptibility to experimental allergic encephalomyelitis 13 (mouse)Not determined135017034784170495Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133594749469947604Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133948143673481584Mouse
1558850Sgp3_mserum gp70 production 3 (mouse)Not determined135632264376823195Mouse
1302073Pgct1_mprimordial germ cell tumor locus 1 (mouse)Not determined135367266487672778Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133948143673481584Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133857254572572704Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133594749469947604Mouse
1357553Cia28_mcollagen induced arthritis 28 (mouse)Not determined135648143696102654Mouse
1357563Bmch6_mbone mechanical trait 6 (mouse)Not determined135523686189237021Mouse
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133599078469990868Mouse
1300573Elsgp2_melevated serum gp70 2 (mouse)Not determined135046870984468908Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134134122875341344Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132805696662057068Mouse
4140959W10q17_mweight 10 weeks QTL 17 (mouse)Not determined55572541112294569Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132029344259673791Mouse
1300916Mobe2_mmodifier of obesity 2 (mouse)Not determined135017034784170495Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132806390362064039Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133476790768768045Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133948143673481584Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20293442112761890Mouse
4142241Tailq3_mtail length QTL 3 (mouse)Not determined55572541112294569Mouse
4142314Tailaq3_mtail length adjusted QTL 3 (mouse)Not determined55572541112294569Mouse
4142331Bxs6_mBXSB/MpJ autoimmune nephritis 6 (mouse)Not determined4505696683596627Mouse
4142372Moo2_mmodifier of Odc2 (mouse)Not determinedX5017034784170495Mouse
10402414Sgp5_mserum gp70 production 5 (mouse)Not determined1356322643105285678Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132776499361765084Mouse
10412109Bxs7_mBXSB/MpJ autoimmune nephritis 7 (mouse)Not determined134505696683596627Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132806390362064039Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133587692596102654Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2568305359683053Mouse
4141992W6q16_mweight 6 weeks QTL 16 (mouse)Not determined55572541112294569Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132043134272237070Mouse
10755533Chol18_mcholesterol 18 (mouse)133081599164815991Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13390000075900000Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133119126065191260Mouse
10755517Chol15_mcholesterol 15 (mouse)133081599164815991Mouse
26884396Humsd4_mhumerus midshaft diameter 4, 10 week (mouse)134770000073000000Mouse
14746975Manh74_mmandible shape 74 (mouse)135232915086329150Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133097563464975634Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134044044074440440Mouse

miRNA Target Status

Predicted Targets
Summary Value
Count of predictions:12314
Count of gene targets:5626
Count of transcripts:8741
Interacting mature miRNAs:mmu-miR-7a-1-3p
Prediction methods:Microtar, Miranda, Pita, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSMUST00000083500
RefSeq Status:
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38.p6 Ensembl1358,392,779 - 58,392,886 (-)Ensembl
RefSeq Acc Id: NR_029825
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391358,540,593 - 58,540,700 (-)NCBI
GRCm381358,392,779 - 58,392,886 (-)ENTREZGENE
MGSCv371358,494,140 - 58,494,247 (-)RGD
Celera1359,455,142 - 59,455,249 (-)RGD
cM Map13 ENTREZGENE
Sequence:
Promoters
RGD ID:8680532
Promoter ID:EPDNEW_M18297
Type:single initiation site
Name:Mir7-1_1
Description:Mus musculus microRNA 7-1 (Mir7-1), microRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381358,392,797 - 58,392,857EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:3619436 AgrOrtholog
Ensembl Genes ENSMUSG00000065434 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000083500 ENTREZGENE
MGD MGI:3619436 ENTREZGENE
miRBase MI0000728 ENTREZGENE
NCBI Gene 723902 ENTREZGENE
PhenoGen Mir7-1 PhenoGen
RNAcentral URS000028D811 RNACentral
  URS0000591950 RNACentral
  URS000075EF96 RNACentral