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Gene: Cxh3orf38 (similar to human chromosome 3 open reading frame 38) Rattus norvegicus

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No known orthologs.

Symbol:

Cxh3orf38

Name:

similar to human chromosome 3 open reading frame 38

RGD ID:

2324134

Description:

Orthologous to human C3orf38 (chromosome 3 open reading frame 38).

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

hypothetical protein LOC100361713; hypothetical protein LOC100362724; LOC100361713; LOC100362724; uncharacterized protein C3orf38 homolog

RGD Orthologs

Alliance Orthologs

More Info

homologs ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Other homologs ²				less info ...
Homo sapiens (human):	C3orf38 (chromosome 3 open reading frame 38)	HGNC	Ensembl
Alliance orthologs ³
Mus musculus (house mouse):	4930453N24Rik (RIKEN cDNA 4930453N24 gene)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	C3orf38 (chromosome 3 open reading frame 38)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:ch211-261p9.4	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG13876	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	c3orf38	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	23,936,701 - 23,938,032 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	23,936,699 - 23,938,088 (+)	Ensembl				GRCr8
mRatBN7.2	X	20,493,681 - 20,494,994 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	20,493,679 - 20,494,995 (+)	Ensembl				mRatBN7.2
Rnor_6.0	X	20,563,056 - 20,564,367 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	20,563,114 - 20,564,157 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	21,307,930 - 21,309,254 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	40,839,125 - 40,840,376 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	20,745,069 - 20,747,786 (+)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

Variants in Cxh3orf38
2 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	31
Count of miRNA genes:	31
Interacting mature miRNAs:	31
Transcripts:	ENSRNOT00000015146
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	4001493	24470521	Rat

Markers in Region

RH131187

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	X	21,309,037 - 21,309,219	NCBI	Rnor5.0
Rnor_5.0	X	22,416,030 - 22,416,212	NCBI	Rnor5.0
Rnor_5.0	11	1,794,891 - 1,795,073	NCBI	Rnor5.0
RGSC_v3.4	11	2,100,213 - 2,100,394	UniSTS	RGSC3.4
RGSC_v3.4	X	40,840,175 - 40,840,356	UniSTS	RGSC3.4
Celera	11	2,465,548 - 2,465,729	UniSTS
Celera	X	20,747,574 - 20,747,755	UniSTS
Cytogenetic Map	11	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
8	2	8	23	25	22	9	8	9	6	50	30	4	11	3	21	13	9	9

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003752027	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006227307	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000015146

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	23,936,699 - 23,938,088 (+)	Ensembl
mRatBN7.2 Ensembl	X	20,493,679 - 20,494,995 (+)	Ensembl
Rnor_6.0 Ensembl	X	20,563,114 - 20,564,157 (+)	Ensembl

RefSeq Acc Id:

XM_003752027 ⟹ XP_003752075

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	23,936,701 - 23,938,032 (+)	NCBI
mRatBN7.2	X	20,493,681 - 20,494,994 (+)	NCBI
Rnor_6.0	X	20,563,056 - 20,564,367 (+)	NCBI
Rnor_5.0	X	21,307,930 - 21,309,254 (+)	NCBI

Sequence:

show sequence

GCGGGCCGTGAGGGCGACATTGGTGGCGTCGTCCTCTGCCCCCTTCCCCGGGGGCGAGATGTCG
GGGCTCAGCCACTTAGAGTCGGAAGGCTGCCGGAATCTACTCCGCATGCTGGACAATGACGAGA
TCATGGCCCTTTGCGACACCGTCACCAACCGCCTGGTGCAGCCTGTGGACCGCCAAGATGCTAT
TCGTGCAATATTAGTGTACAGCCAAAATGTAGAAGAACTTCTGAGGCGCAAAAAAGTCCACCGA
GAAGTCATATTTAAGTATTTGGCAACACAAGGGGTGGTTGTACCTCCAACTACCGAAAAACATG
GTCTTATTCAGTATGCAAAAAGTTACTGGGAAGAACAGTCTCCAAAACTGAAGGAGACGGCAGA
GCCAGTTAAAAAGACGGAGGACAGCCAGCTCTTTGAGCAGCAGGCAAAGGAAGATAAAGAAGCT
GAAAAGGTTGATTTTCGTCGCTTAGGAGAAGAATTTTGTCACTGGTTCTTTGAACTTCTTAATT
CTCAGAATCCTTTTTTGGGACCACCTCAGGATGAATGGGGCCCACAGCACTTCTGGCATGATGT
GAAGCTTAGGTTTTATTATAACACCTCAGAACAAAACATGACAGACTACGAAGGAGCAGAAATG
GTGAGCCTTCGTTTACTGTCATTGGTGAAAGAGGAATTTCTTTTTCTCAGTCCCAACCTTGATT
CTCAAGGACTAAAATGTGCGTCTTCTCCTCATGGACTAGTTATGGTTGGAGTTGCAGGGACTGT
CCACCGCGGAAATTCTTGTTTGGGCATATTTGAACAAATTTTTGGACTTATCCGTAGCCCTTTT
GTAGAAAATACTTGGAAAATCAAATTTATTAACCTGAGAATCGTTGGAGGAAGTTCCCTTGCTC
CTGGATCATCGCTGACACCATCTGTAACATTTGAACAGAGTGATTTCGAGGCCTTTTATAATGT
AATCACTTTGTGTAATACCCCTGAGGTAAGACCTAATGTAAGGCAGATATTGGATAGTGGAACT
GGAGACCAGGTTTTATGTAGTGGAGATGAGGCCTTGTTGAACAAAAAGGAAATGAATTTGCCTA
CCCCTCTAAAGCATTGAACACTGTACCACAGCCTGAAGAAGCTGCAGAAACACAACACTGACCA
TCTCTAAGCCACTGCAGGTCTGAGAATTGACATATTTTAGCTCAAATAACTTTTTGGACTACAG
ACTAATGTGAATACTTGCCTATTTCTACCTGAGTTACAGCAAATGTTCTGTGAACTTATTGCGG
TCCACCAAATAAATCCCACTTTAGATGTTGTA

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Protein Sequences


Protein RefSeqs	XP_003752075	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000085014.2
	ENSRNOP00000097895
	ENSRNOP00000097895.1

RefSeq Acc Id:

XP_003752075 ⟸ XM_003752027

- UniProtKB:

A0A8I6ATJ9 (UniProtKB/TrEMBL), A0A8I6A2B5 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSGLSHLESEGCRNLLRMLDNDEIMALCDTVTNRLVQPVDRQDAIRAILVYSQNVEELLRRKKV
HREVIFKYLATQGVVVPPTTEKHGLIQYAKSYWEEQSPKLKETAEPVKKTEDSQLFEQQAKEDK
EAEKVDFRRLGEEFCHWFFELLNSQNPFLGPPQDEWGPQHFWHDVKLRFYYNTSEQNMTDYEGA
EMVSLRLLSLVKEEFLFLSPNLDSQGLKCASSPHGLVMVGVAGTVHRGNSCLGIFEQIFGLIRS
PFVENTWKIKFINLRIVGGSSLAPGSSLTPSVTFEQSDFEAFYNVITLCNTPEVRPNVRQILDS
GTGDQVLCSGDEALLNKKEMNLPTPLKH

hide sequence

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:2324134	AgrOrtholog
BioCyc Gene	G2FUF-2770	BioCyc
Ensembl Genes	ENSRNOG00000000720	UniProtKB/TrEMBL
	ENSRNOG00000038965	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000015146	ENTREZGENE
	ENSRNOT00000015146.7	UniProtKB/TrEMBL
	ENSRNOT00000097208.2	UniProtKB/TrEMBL
InterPro	NTF2-like_dom_sf	UniProtKB/TrEMBL
	UPF_C3orf38	UniProtKB/TrEMBL
KEGG Report	rno:100362724	UniProtKB/TrEMBL
NCBI Gene	100362724	ENTREZGENE
PANTHER	CHROMOSOME 3 OPEN READING FRAME 38	UniProtKB/TrEMBL
	PTHR21084	UniProtKB/TrEMBL
Pfam	DUF4518	UniProtKB/TrEMBL
PhenoGen	Cxh3orf38	PhenoGen
RatGTEx	ENSRNOG00000000720	RatGTEx
	ENSRNOG00000038965	RatGTEx
Superfamily-SCOP	SSF54427	UniProtKB/TrEMBL
UniProt	A0A8I6A2B5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ATJ9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-09-19	Cxh3orf38	similar to human chromosome 3 open reading frame 38	LOC100362724	hypothetical protein LOC100362724	Symbol and Name Changed	1299863	APPROVED
2021-03-09	LOC100362724	hypothetical protein LOC100362724	LOC100361713	hypothetical protein LOC100361713	Data merged from RGD:2319561	737654	PROVISIONAL
2010-05-06	LOC100362724	hypothetical protein LOC100362724			Symbol and Name status set to provisional	70820	PROVISIONAL
2010-05-05	LOC100361713	hypothetical protein LOC100361713			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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