Prss54 (serine protease 54) - Rat Genome Database

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Gene: Prss54 (serine protease 54) Heterocephalus glaber
Analyze
Symbol: Prss54
Name: serine protease 54
RGD ID: 18935302
Description: ENCODES a protein that exhibits peptidase activity (inferred); serine-type endopeptidase activity (inferred); INVOLVED IN proteolysis (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: inactive serine protease 54; protease, serine 54
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: HetGla 1.0 - Naked Mole-Rat female 1.0 Assembly
Position:
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474627,942,210 - 27,954,698 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474627,952,022 - 27,954,879 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
proteolysis  (IEA)

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Prss54
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474627,942,210 - 27,954,698 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474627,952,022 - 27,954,879 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
PRSS54
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381658,279,997 - 58,295,025 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1658,279,997 - 58,295,047 (-)Ensemblhg38GRCh38
GRCh371658,313,901 - 58,328,929 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361656,871,402 - 56,886,452 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1642,813,348 - 42,828,405 (-)NCBICelera
Cytogenetic Map16q21NCBI
HuRef1644,182,249 - 44,197,306 (-)NCBIHuRef
CHM1_11659,720,789 - 59,735,855 (-)NCBICHM1_1
T2T-CHM13v2.01664,075,287 - 64,090,313 (-)NCBIT2T-CHM13v2.0
Prss54
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39896,285,694 - 96,302,965 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl896,285,697 - 96,302,968 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38895,559,066 - 95,576,337 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl895,559,069 - 95,576,340 (-)Ensemblmm10GRCm38
MGSCv37898,083,192 - 98,099,097 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36898,448,199 - 98,464,326 (-)NCBIMGSCv36mm8
MGSCv36895,358,238 - 95,373,984 (-)NCBIMGSCv36mm8
Celera899,870,836 - 99,886,555 (-)NCBICelera
Cytogenetic Map8D1NCBI
cM Map847.12NCBI
Prss54
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8199,486,059 - 9,502,900 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl199,486,017 - 9,503,697 (+)EnsemblGRCr8
mRatBN7.2199,479,995 - 9,496,838 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl199,479,995 - 9,496,835 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx199,448,242 - 9,465,133 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01910,215,068 - 10,231,959 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0199,501,391 - 9,518,286 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd199,477,135 - 9,493,976 (+)NCBIDahl_SR_JrHsd
Lyon_Normotensive1913,289,066 - 13,305,905 (+)NCBILyon_Normotensive
Lyon_Hypertensive1913,781,952 - 13,798,793 (+)NCBILyon_Hypertensive
F344_StmMcwi199,329,116 - 9,345,957 (+)NCBIF344_StmMcwi
Rnor_6.0199,895,052 - 9,911,965 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl199,895,121 - 9,911,959 (+)Ensemblrn6Rnor6.0
Rnor_5.0199,880,069 - 9,896,968 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4199,938,003 - 9,954,844 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera199,373,558 - 9,390,626 (+)NCBICelera
RGSC_v3.1199,942,828 - 9,959,667 (+)NCBI
Cytogenetic Map19p13NCBI
Prss54
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543315,775,880 - 15,788,524 (-)Ensembl
ChiLan1.0NW_00495543315,775,492 - 15,788,128 (-)NCBIChiLan1.0ChiLan1.0
PRSS54
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21867,743,145 - 67,758,203 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11673,663,994 - 73,679,041 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01638,548,915 - 38,562,629 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11657,678,790 - 57,693,680 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1657,678,790 - 57,693,680 (-)EnsemblpanPan2panpan1.1
PRSS54
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1258,318,971 - 58,332,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl258,318,150 - 58,332,056 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha254,948,931 - 54,962,014 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0258,857,437 - 58,870,494 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl258,731,660 - 58,870,494 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1255,687,278 - 55,700,373 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0256,694,864 - 56,707,967 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0257,589,406 - 57,602,491 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Prss54
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934949,442,421 - 49,453,028 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647510,136,275 - 10,146,626 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647510,136,275 - 10,146,654 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRSS54
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl620,083,221 - 20,100,786 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1620,085,494 - 20,090,486 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2618,144,197 - 18,161,503 (-)NCBISscrofa10.2Sscrofa10.2susScr3
PRSS54
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1544,214,986 - 44,249,005 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl544,215,216 - 44,229,224 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604731,949,429 - 31,962,389 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prss54
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1172,395,904 - 2,408,907 (-)NCBIRrattus_CSIRO_v1


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_021256972 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AHKG01026435 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSHGLT00000017414   ⟹   ENSHGLP00000017241
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla_female_1.0 EnsemblNW_00462474627,942,210 - 27,954,698 (+)Ensembl
RefSeq Acc Id: XM_021256972   ⟹   XP_021112631
Type: CODING
Position:
Naked Mole-Rat AssemblyChrPosition (strand)Source
HetGla 1.0NW_00462474627,952,022 - 27,954,879 (+)NCBI
Protein Sequences
Protein RefSeqs XP_021112631 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_021112631   ⟸   XM_021256972
- UniProtKB: A0AAX6STC2 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSHGLP00000017241   ⟸   ENSHGLT00000017414


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSHGLG00000012351 Ensembl
Gene3D-CATH Trypsin-like serine proteases UniProtKB/TrEMBL
InterPro Peptidase_S1_PA UniProtKB/TrEMBL
  Peptidase_S1_PA_chymotrypsin UniProtKB/TrEMBL
  Trypsin_dom UniProtKB/TrEMBL
NCBI Gene Prss54 ENTREZGENE
PANTHER CHYMOTRYPSIN-RELATED UniProtKB/TrEMBL
  INACTIVE SERINE PROTEASE 54 UniProtKB/TrEMBL
Pfam Trypsin UniProtKB/TrEMBL
PROSITE TRYPSIN_DOM UniProtKB/TrEMBL
SMART Tryp_SPc UniProtKB/TrEMBL
Superfamily-SCOP Trypsin-like serine proteases UniProtKB/TrEMBL
UniProt A0AAX6STC2 ENTREZGENE, UniProtKB/TrEMBL